The DOI matches its Crossref record; 34 of the 34 references it cites were found in a registry or an index.
Competitive and cooperative metabolic interactions in bacterial communities
Open accessOverview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
KEGG: Kyoto Encyclopedia of Genes and Genomes
Ogata, H., Goto, S., Sato, K., Fujibuchi, W., Bono, H., & Kanehisa, M. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.1.29 · Cited by 31,232
Human gut microbes associated with obesity
Ley, R. E., Turnbaugh, P. J., Klein, S., & Gordon, J. I. (2006) · Nature · doi:10.1038/4441022a · Cited by 8,785
Bacterial competition: surviving and thriving in the microbial jungle
Hibbing, M. E., Fuqua, C., Parsek, M. R., & Peterson, S. B. (2010) · Nature Reviews Microbiology · doi:10.1038/nrmicro2259 · Cited by 2,689
Microbial community structure and its functional implications
Fuhrman, J. A. (2009) · Nature · doi:10.1038/nature08058 · Cited by 1,382
Resource Competition between Plankton Algae: An Experimental and Theoretical Approach
Tilman, D. (1977) · Ecology · doi:10.2307/1935608 · Cited by 1,253
The Assembly of Species Communities: Chance or Competition?
Connor, E. F., & Simberloff, D. (1979) · Ecology · doi:10.2307/1936961 · Cited by 1,190
High-throughput generation, optimization and analysis of genome-scale metabolic models
Henry, C. S., DeJongh, M., Best, A. A., Frybarger, P. M., Linsay, B., & Stevens, R. L. (2010) · Nature Biotechnology · doi:10.1038/nbt.1672 · Cited by 1,090
Self-citationSpecies packing and competitive equilibrium for many species
MacArthur, R. (1970) · Theoretical Population Biology · doi:10.1016/0040-5809(70)90039-0 · Cited by 1,070
The contribution of species richness and composition to bacterial services
Bell, T., Newman, J. A., Silverman, B. W., Turner, S. L., & Lilley, A. K. (2005) · Nature · doi:10.1038/nature03891 · Cited by 950
Bacterial Iron Sources: From Siderophores to Hemophores
Wandersman, C., & Delepelaire, P. (2004) · Annual Review of Microbiology · doi:10.1146/annurev.micro.58.030603.123811 · Cited by 930
Mowery, D. C., Oxley, J. E., & Silverman, B. S. (1998) · Research Policy · doi:10.1016/s0048-7333(98)00066-3 · Cited by 884
Fitness and its role in evolutionary genetics
Orr, H. A. (2009) · Nature Reviews Genetics · doi:10.1038/nrg2603 · Cited by 695
Metabolic modeling of a mutualistic microbial community
Stolyar, S., Van Dien, S., Hillesland, K. L., Pinel, N., Lie, T. J., Leigh, J. A., & Stahl, D. A. (2007) · Molecular Systems Biology · doi:10.1038/msb4100131 · Cited by 553
Evolution of species interactions in a biofilm community
Hansen, S. K., Rainey, P. B., Haagensen, J. A. J., & Molin, S. (2007) · Nature · doi:10.1038/nature05514 · Cited by 552
A global network of coexisting microbes from environmental and whole-genome sequence data
Chaffron, S., Rehrauer, H., Pernthaler, J., & von Mering, C. (2010) · Genome Research · doi:10.1101/gr.104521.109 · Cited by 496
Mani, R., St.Onge, R. P., Hartman, J. L., Giaever, G., & Roth, F. P. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0712255105 · Cited by 473
Experimental Studies on the Struggle for Existence
Gause, G. F. (1932) · Journal of Experimental Biology · doi:10.1242/jeb.9.4.389 · Cited by 401
Emergent cooperation in microbial metabolism
Wintermute, E. H., & Silver, P. A. (2010) · Molecular Systems Biology · doi:10.1038/msb.2010.66 · Cited by 344
Environments that Induce Synthetic Microbial Ecosystems
Klitgord, N., & Segrè, D. (2010) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1001002 · Cited by 331
Synergistic interactions in the microbial world
Schink, B. (2002) · Antonie van Leeuwenhoek · doi:10.1023/a:1020579004534 · Cited by 294
Stable Coexistence of Five Bacterial Strains as a Cellulose-Degrading Community
Kato, S., Haruta, S., Cui, Z. J., Ishii, M., & Igarashi, Y. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.11.7099-7106.2005 · Cited by 265
Examination of the ?null? model of connor and simberloff for species co-occurrences on Islands
Diamond, J. M., & Gilpin, M. E. (1982) · Oecologia · doi:10.1007/bf00349013 · Cited by 260
Positive interactions among competitors can produce species‐rich communities
Gross, K. (2008) · Ecology Letters · doi:10.1111/j.1461-0248.2008.01204.x · Cited by 255
Dynamics in the mixed microbial concourse
Wintermute, E. H., & Silver, P. A. (2010) · Genes & Development · doi:10.1101/gad.1985210 · Cited by 193
The present status of the competitive exclusion principle
Boer, P. J. D. (1986) · Trends in Ecology & Evolution · doi:10.1016/0169-5347(86)90064-9 · Cited by 148
Evolution of cooperation between individuals
Lotem, A., Fishman, M. A., & Stone, L. (1999) · Nature · doi:10.1038/22247 · Cited by 142
Gomes, N. C. M., Адольфовна, К. И., Abraham, W.-R., & Smalla, K. (2005) · FEMS Microbiology Ecology · doi:10.1016/j.femsec.2005.02.005 · Cited by 119
Ecosystems biology of microbial metabolism
Klitgord, N., & Segrè, D. (2011) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2011.04.018 · Cited by 113
Metabolic-network-driven analysis of bacterial ecological strategies
Freilich, S., Kreimer, A., Borenstein, E., Yosef, N., Sharan, R., Gophna, U., & Ruppin, E. (2009) · Genome biology · doi:10.1186/gb-2009-10-6-r61 · Cited by 102
Self-citationCherif, M., & Loreau, M. (2007) · The American Naturalist · doi:10.1086/516844 · Cited by 80
Habitat-Lite: A GSC Case Study Based on Free Text Terms for Environmental Metadata
Hirschman, L., Clark, C., Cohen, K. B., Mardis, S., Luciano, J., Kottmann, R., Cole, J. R., Markowitz, V. M., Kyrpides, N. C., Morrison, N., et al. (2008) · OMICS A Journal of Integrative Biology · doi:10.1089/omi.2008.0016 · Cited by 45
Getting in Touch with Your Friends
Marx, C. J. (2009) · Science · doi:10.1126/science.1173088 · Cited by 40
Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species
Freilich, S., Kreimer, A., Borenstein, E., Gophna, U., Sharan, R., & Ruppin, E. (2010) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1000690 · Cited by 39
Self-citation
Cited by
You are what you eat: Diet, health and the gut microbiota
Zmora, N., Suez, J., & Elinav, E. (2019) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/s41575-018-0061-2 · Cited by 1,792
Deciphering microbial interactions and detecting keystone species with co-occurrence networks
Berry, D., & Widder, S. (2014) · Frontiers in Microbiology · doi:10.3389/fmicb.2014.00219 · Cited by 1,756
Where less may be more: how the rare biosphere pulls ecosystems strings
Jousset, A., Bienhold, C., Chatzinotas, A., Gallien, L., Gobet, A., Kurm, V., Küsel, K., Rillig, M. C., Rivett, D. W., Salles, J. F., et al. (2017) · The ISME Journal · doi:10.1038/ismej.2016.174 · Cited by 1,359
Core microbiomes for sustainable agroecosystems
Toju, H., Peay, K. G., Yamamichi, M., Narisawa, K., Hiruma, K., Naito, K., Fukuda, S., Ushio, M., Nakaoka, S., Onoda, Y., et al. (2018) · Nature Plants · doi:10.1038/s41477-018-0139-4 · Cited by 1,077
Trivedi, P., Anderson, I. C., & Singh, B. K. (2013) · Trends in Microbiology · doi:10.1016/j.tim.2013.09.005 · Cited by 584
Metadata
- Authors
- Freilich, S., Zarecki, R., Eilam, O., Segal, E. S., Henry, C. S., Kupiec, M., Gophna, U., Sharan, R., & Ruppin, E.
- Venue
- Nature Communications
- Published
- 2011-12-13
- Volume
- 2
- Issue
- 1
- Pages
- 589-589
- ISSN
- 2041-1723 (ISSN-L)
- OpenAlex
- W2076393137
- Cited by
- 566
- References
- 34
- FWCI
- 5.64
- Type
- journal article
- Language
- en
- Open access
- bronze
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
