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Acquired mutations in TET2 are common in myelodysplastic syndromes
Abstract
Myelodysplastic syndromes (MDS) represent a heterogeneous group of neoplastic hematopoietic disorders. Several recurrent chromosomal aberrations have been associated with MDS, but the genes affected have remained largely unknown. To identify relevant genetic lesions involved in the pathogenesis of MDS, we conducted SNP array-based genomic profiling and genomic sequencing in 102 individuals with MDS and identified acquired deletions and missense and nonsense mutations in the TET2 gene in 26% of these individuals. Using allele-specific assays, we detected TET2 mutations in most of the bone marrow cells (median 96%). In addition, the mutations were encountered in various lineages of differentiation including CD34(+) progenitor cells, suggesting that TET2 mutations occur early during disease evolution. In healthy tissues, TET2 expression was shown to be elevated in hematopoietic cells with highest expression in granulocytes, in line with a function in myelopoiesis. We conclude that TET2 is the most frequently mutated gene in MDS known so far.
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“Mutation of tet methylcytosine dioxygenase 2 (encoded by TET2) drives myeloid malignancy initiation and progression1–3.”
From RNA m5C oxidation by TET2 regulates chromatin state and leukaemogenesis (2024) · cites this paper as [3]
In the citing paper
“somatic deletions and loss-of-function mutations in the TET2 gene were identified in 10–20% patients with MDS and MPN (Delhommeau et al., 2009; Langemeijer et al., 2009)”
From Tet2 loss leads to increased hematopoietic stem cell self-renewal and myeloid transformation (2011) · cites this paper as Langemeijer et al., 2009
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Research works printed but not linked: 18
- Nimer, S.D. Myelodysplastic syndromes. Blood 111, 4841–4851 (2008). · DOI
- Pedersen-Bjergaard, J., Pedersen, M., Roulston, D. & Philip, P. Different genetic pathways in leukemogenesis for patients presenting with therapy-related myelodysplasia and therapy-related acute myeloid leukemia. Blood 86, 3542–3552 (1995). · DOI
- List, A.F., Vardiman, J., Issa, J.P. & DeWitte, T.M. Myelodysplastic syndromes. Hematology (Am. Soc. Hematol. Educ. Program) 2004, 297–317 (2004).
- Haase, D. et al. New insights into the prognostic impact of the karyotype in MDS and correlation with subtypes: evidence from a core dataset of 2124 patients. Blood 110, 4385–4395 (2007). · DOI
- Nolte, F. & Hofmann, W.K. Myelodysplastic syndromes: molecular pathogenesis and genomic changes. Ann. Hematol. 87, 777–795 (2008). · DOI
- Ebert, B.L. et al. Identification of RPS14 as a 5q- syndrome gene by RNA interference screen. Nature 451, 335–339 (2008). · DOI
- Pellagatti, A. et al. Haploinsufficiency of RPS14 in 5q- syndrome is associated with deregulation of ribosomal- and translation-related genes. Br. J. Haematol. 142, 57–64 (2008). · DOI
- Gondek, L.P., Dunbar, A.J., Szpurka, H., McDevitt, M.A. & Maciejewski, J.P. SNP array karyotyping allows for the detection of uniparental disomy and cryptic chromosomal abnormalities in MDS/MPD-U and MPD. PLoS ONE 2, e1225 (2007). · DOI
- Gondek, L.P. et al. Chromosomal lesions and uniparental disomy detected by SNP arrays in MDS, MDS/MPD, and MDS-derived AML. Blood 111, 1534–1542 (2008). · DOI
- Mohamedali, A. et al. Prevalence and prognostic significance of allelic imbalance by single-nucleotide polymorphism analysis in low-risk myelodysplastic syndromes. Blood 110, 3365–3373 (2007). · DOI
- Wang, L. et al. Genome-wide analysis of copy number changes and loss of heterozygosity in myelodysplastic syndrome with del(5q) using high-density single nucleotide polymorphism arrays. Haematologica 93, 994–1000 (2008). · DOI
- Dunbar, A.J. et al. 250K single nucleotide polymorphism array karyotyping identifies acquired uniparental disomy and homozygous mutations, including novel missense substitutions of c-Cbl, in myeloid malignancies. Cancer Res. 68, 10349–10357 (2008). · DOI
- Viguie, F. et al. Common 4q24 deletion in four cases of hematopoietic malignancy: early stem cell involvement? Leukemia 19, 1411–1415 (2005). · DOI
- Delhommeau, F. et al. TET2 is a novel tumor suppressor gene inactivated in myeloproliferative neoplasms: identification of a pre-JAK2 V617F event. Blood (ASH Annual Meeting Abstracts), 112 lba-3 (2008). · DOI
- den Dunnen, J.T. & Antonarakis, S.E. Nomenclature for the description of human sequence variations. Hum. Genet. 109, 121–124 (2001). · DOI
- Nannya, Y. et al. A robust algorithm for copy number detection using high-density oligonucleotide single nucleotide polymorphism genotyping arrays. Cancer Res. 65, 6071–6079 (2005). · DOI
- Redon, R. et al. Global variation in copy number in the human genome. Nature 444, 444–454 (2006). · DOI
- Ruiter, E.M. et al. The mitochondrial 13513G > A mutation is most frequent in Leigh syndrome combined with reduced complex I activity, optic atrophy and/or Wolff-Parkinson-White. Eur. J. Hum. Genet. 15, 155–161 (2007). · DOI
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Clinical and biological implications of driver mutations in myelodysplastic syndromes
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Metadata
- Authors
- Langemeijer, S. M. C., Kuiper, R. P., Berends, M., Knops, R., Aslanyan, M. G., Massop, M., Stevens-Linders, E., van Hoogen, P., van Kessel, A. G., Raymakers, R. A. P., Kamping, E. J., Verhoef, G. E., Verburgh, E., Hagemeijer, A., Vandenberghe, P., de Witte, T., van der Reijden, B. A., & Jansen, J. H.
- Venue
- Nature Genetics
- Published
- 2009-05-31
- Volume
- 41
- Issue
- 7
- Pages
- 838-842
- ISSN
- 1061-4036
- 1546-1718
- Cited by
- 680
- References
- 0
- Language
- en
- Licence
- www.springer.com/tdm (tdm)
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- Langemeijer, S. M. C., Kuiper, R. P., Berends, M., Knops, R., Aslanyan, M. G., Massop, M., Stevens-Linders, E., van Hoogen, P., van Kessel, A. G., Raymakers, R. A. P., Kamping, E. J., Verhoef, G. E., Verburgh, E., Hagemeijer, A., Vandenberghe, P., de Witte, T., van der Reijden, B. A., & Jansen, J. H. (2009). Acquired mutations in TET2 are common in myelodysplastic syndromes. Nature Genetics. https://doi.org/10.1038/ng.391