Massively parallel single-nucleus RNA-seq with DroNc-seq

Habib, Naomi, Avraham-Davidi, Inbal, Basu, Anindita, Burks, Tyler, Shekhar, Karthik, Hofree, Matan, Choudhury, Sourav R, Aguet, François +6 more·2017·Nature Methods

DOI 10.1038/nmeth.4407

Cited by (1,000)

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Rujin Wang, Dan-Yu Lin, Yuchao Jiang · 2022 · PLoS Genetics
Radionuclide partitioning coefficients in soils and plants and their correlation.
Marsha I. Sheppard · 1985 · PubMed
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Billy I. Kim, Dowon Kim, Anton Schulmann, Yash Patel, Carolina Caban-Rivera, Paul Kim, Ananya D. Jambhale, Kory R. Johnson, Ningping Feng, Qing Xu et al. · 2023 · Journal of Neuroscience
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Mathew J. Baldwin, Christopher Dominic Buckley, Farshid Guilak, P A Hulley, Adam P. Cribbs, Sarah J. B. Snelling · 2023 · Nature Reviews Rheumatology
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MULTI-seq: Scalable sample multiplexing for single-cell RNA sequencing using lipid-tagged indices
Christopher S. McGinnis, David M. Patterson, J. Winkler et al. · 2018 · bioRxiv
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Ellis Patrick, Mariko F. Taga, Ayla Ergün et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
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Daniel Franjic, Jinmyung Choi, Mario Škarica, Chuan Xu, Qian Li, Shaojie Ma, Andrew T.N. Tebbenkamp, Gabriel Santpere, Jon I. Arellano, Ivan Gudelj et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
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Klev Diamanti, Juan Salvador Inda-Díaz, Amanda Raine, Gang Pan, Claes Wadelius, Marco Cavalli · 2020 · Hepatology Research
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Aihui Wang, Aynur Abdulla, Xianting Ding · 2019 · Proceedings of the Institution of Mechanical Engineers Part H Journal of Engineering in Medicine
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Violena Pietrobon, Alessandra Cesano, Francesco Maria Marincola, Jakob Nikolas Kather · 2021 · Frontiers in Immunology
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Mengxia Fu, Jiangping Song · 2021 · Frontiers in Cardiovascular Medicine
Single nucleus RNA-sequencing defines unexpected diversity of cholinergic neuron types in the adult mouse spinal cord
Mor R. Alkaslasi, Zoe E. Piccus, Hanna Silberberg · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
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Homeira Moradi Chameh, Scott Rich, Lihua Wang · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
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Lingxuan Zhang, Qiuyun Yang, Ruixuan Yuan, Manrui Li, Meili Lv, Lin Zhang, Xiaoqi Xie, Weibo Liang, Xiameng Chen · 2023 · Scientific Data
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Karen Davey, Daniel Wong, Filip A. Konopacki, Eugene Kwa, Tony Ly, Heike Fiegler, Christopher R. Sibley · 2021 · Scientific Reports
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Guozheng Feng, Rui Chen, Rui Zhao, Yuanyuan Li, Leilei Ma, Yanpei Wang, Weiwei Men, Jia‐Hong Gao, Shuping Tan, Jian Cheng et al. · 2023 · Communications Biology
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Seth A. Ament, Rianne R. Campbell, Mary Kay Lobo, Joseph P. Receveur, Kriti Agrawal, Alejandra Borjabad, Siddappa N. Byrareddy, Linda Chang, Declan Clarke, Prashant S. Emani et al. · 2024 · Molecular Psychiatry
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Chae-Jeong Lee, Sung-Ho Jang, Jiwoo Lim, Hyun‐Ju Park, So‐Hee Ahn, Seon Young Park, Hyangmi Seo, Soo‐Jin Song, Jung‐A Shin, Chulhee Choi et al. · 2025 · Experimental & Molecular Medicine
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Yueqiu Sun, Nianzuo Yu, Junhu Zhang, Bai Yang · 2025 · Micromachines
Single cell RNA-sequencing: replicability of cell types
Megan Crow, Jesse A Gillis · 2019 · Current Opinion in Neurobiology
Monod : model-based discovery and integration through fitting stochastic transcriptional dynamics to single-cell sequencing data
Gennady Gorin, Tara Chari, Maria Carilli, John J. Vastola, Lior S. Pachter · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
Spatial transcriptomics and single-nucleus RNA sequencing reveal a transcriptomic atlas of adult human spinal cord
Donghang Zhang, Yali Chen, Yiyong Wei, Hongjun Chen, Yujie Wu, Lin Wu, Jin Li, Qiyang Ren, Changhong Miao, Tao Zhu et al. · 2024 · eLife
Hippocampal neurogenesis in adult primates: a systematic review
Thomas Elliott, Kathy Y Liu, Jemma Hazan, Jack Wilson, Hemisha Vallipuram, Katherine M. Jones, Jansher Mahmood, Guy Gitlin-Leigh, Robert J. Howard · 2024 · Molecular Psychiatry
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Varun K. A. Sreenivasan, Saranya Balachandran, Malte Spielmann · 2022 · Journal of Medical Genetics
Early life adversity across different cell- types in the brain
Gal Warhaftig, Daniel Medeiros Almeida, Gustavo Turecki · 2023 · Neuroscience & Biobehavioral Reviews
Single-cell transcriptomics of the ocular anterior segment: a comprehensive review
Sofia Ahsanuddin, Albert Y. Wu · 2023 · Eye
Activity‐regulated gene expression across cell types of the mouse hippocampus
Erik D. Nelson, Kristen R. Maynard, Kyndall R. Nicholas, Matthew Nguyen Tran, Heena R. Divecha, Leonardo Collado‐Torres, Stephanie C. Hicks, Keri Martinowich · 2023 · Hippocampus
Heterogeneous tumor microenvironment in pancreatic ductal adenocarcinoma: An emerging role of single‐cell analysis
Sooin Byeon, Taymin du Toit‐Thompson, Josef Gillson, Anthony James Gill, Jaswinder Singh Samra, Anubhav Mittal, Sumit Sahni · 2023 · Cancer Medicine
Disruption of the autism gene and chromatin regulator KDM5A alters hippocampal cell identity
Lauretta El Hayek, Darlene DeVries, Ashlesha Gogate, Ariel Aiken, Kiran J. Kaur, Maria H. Chahrour · 2023 · Science Advances
FIN-Seq: transcriptional profiling of specific cell types from frozen archived tissue of the human central nervous system
R. Amamoto, Emanuela Zuccaro, Nathan C. Curry, Sonia Khurana, Hsu-Hsin Chen, C. Cepko, P. Arlotta · 2019 · Nucleic Acids Research
TrkB Signaling Influences Gene Expression in Cortistatin-Expressing Interneurons
Kristen R. Maynard, Alisha Kardian, Julia L. Hill, Yishan Mai, Brianna K. Barry, Henry L. Hallock, Andrew E. Jaffe, Keri Martinowich · 2020 · eNeuro
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Angeliki Zarkali, Peter McColgan, Mina Ryten, Regina Hertfelder Reynolds, Louise‐Ann Leyland, Andrew John Lees, Geraint E. Rees, Rimona Sharon Weil · 2020 · NeuroImage Clinical
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Oliver Hahn, Tobias Fehlmann, Hui Zhang, Christy Nicole Munson, Ryan T. Vest, Adam Borcherding, Sophie N. Liu, Christian Villarosa, Snezana Drmanac, Rade Drmanac et al. · 2020 · Nucleic Acids Research
High‐throughput morphometric and transcriptomic profiling uncovers composition of naïve and sensory‐deprived cortical cholinergic VIP/CHAT neurons
Nadav Yayon, Oren Amsalem, Tamara Zorbaz, Or Yakov, Serafima Dubnov, Katarzyna Winek, Amir Dudai, Gil Adam, Anna K. Schmidtner, Marc Tessier‐Lavigne et al. · 2022 · The EMBO Journal
Single-nuclei RNA-seq on human retinal tissue provides improved transcriptome profiling
Qingnan Liang, Rachayata Dharmat, Leah A. Owen et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
inDrops-2: a flexible, versatile and cost-efficient droplet microfluidic approach for high-throughput scRNA-seq of fresh and preserved clinical samples
Simonas Juzėnas, Karolis Goda, Vaidotas Kiseliovas, Justina Žvirblytė, Àlvaro Quintanal-Villalonga, Juozas Siurkus, Juozas Nainys, Linas Mažutis · 2024 · Nucleic Acids Research
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Ankish Arya, Prabhat Tripathi, Nidhi Dubey, Imlimaong Aier, Pritish Kumar Varadwaj · 2025 · Genomics & Informatics
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Chenxu Chang, Hongyan Zuo, Yang Li · 2023 · Neurobiology of Disease
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Zheyi Zhou, Dongtao Wei, Wei Liu, Hong Chen, Shaozheng Qin, Pengfei Xu, Xi‐Nian Zuo, Yuejia Luo, Jiang Qiu · 2023 · Human Brain Mapping
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Seon Hye E. Park, Ashwinikumar Kulkarni, Geneviève Konopka · 2023 · PLoS Biology
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Feng, Guozheng, Wang, Yiwen, Huang, Weijie, Chen, Haojie, Cheng, Jian, Shu, Ni · 2024 · eLife
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Liang Chen, Haotong Li, Xiaorui Liu, Ningning Zhang, Kui Wang, Anteng Shi, Hang Gao, Deniz Akdiş, Ardan Muammer Saguner, Xinjie Xu et al. · 2024 · Signal Transduction and Targeted Therapy
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Christophe Galichet, Richard W. Clayton, Robin Howard Lovell-Badge · 2021 · Frontiers in Cellular Neuroscience
EmptyNN: A neural network based on positive and unlabeled learning to remove cell-free droplets and recover lost cells in scRNA-seq data
Fangfang Yan, Zhongming Zhao, Lukas Mikolaj Simon · 2021 · Patterns
Single-nucleus RNA sequencing reveals transcriptional changes of hippocampal neurons in APP23 mouse model of Alzheimer’s disease
Shan Zhong, Mengdi Wang, Yaxi Zhan, Jie Zhang, Xiaoli Yang, Shumei Fu, Danlei Bi, Feng Gao, Yong Shen, Zuolong Chen · 2020 · Bioscience Biotechnology and Biochemistry
Nuclei Isolation from Fresh Frozen Brain Tumors for Single-Nucleus RNA-seq and ATAC-seq
Ashwin Narayanan, Enrique Blanco-Carmona, Engin Demirdizen · 2020 · Journal of Visualized Experiments
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Ana Ortiz, Fatma Ayhan, Nitin Khandelwal, Elliot H. Outland, Miranda J. Jankovic, Matthew J. Harper, Geneviève Konopka · 2025 · Cell Reports
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Arnau Sebé-Pedrós, Amos Tanay, Mara Lawniczak, Detlev Arendt, Stein Aerts, John M. Archibald, Maria Ina Arnone, Mark Blaxter, Phillip A. Cleves, Susana M. Coelho et al. · 2025 · Nature
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Brandon Lieberman, Meena Kusi, Chia‐Nung Hung, Chih‐Wei Chou, He Ning, Yen‐Yi Ho, Josephine Amalia Taverna, Tim H.‐M. Huang, Chun‐Liang Chen · 2020 · Journal of Translational Genetics and Genomics
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Jimmy A. Guo, Hannah I. Hoffman, Colin D. Weekes, Lei Zheng, David Tsai Ting, William L. Hwang · 2021 · Clinical Cancer Research
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Qingyang Zhang, Daniel Wai‐Hung Ho, Yu‐Man Tsui, Irene Oi‐Lin Ng · 2022 · Cellular and Molecular Gastroenterology and Hepatology
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Ernest Aw, Yingying Zhang, Esra Yalçın, U. Herrmann, Stacie L. Lin, P. Kent Langston, Carlos Eduardo Castrillon, Minghe Ma, Jeffrey R. Moffitt, Michael C. Carroll · 2023 · Brain Behavior and Immunity
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Zhiyi Zhou, Xiuhua Yang · 2024 · Frontiers in Endocrinology
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Genevieve Stein-O’Brien, Ryan G. Palaganas, Ernest Michael Meyer, Javier Redding‐Ochoa, Olga Pletniková, Haidan Guo, William R. Bell, Juan Carlos Troncoso, Richard L. Huganir, Meaghan Morris · 2025 · Cell Reports
Strategies for cellular deconvolution in human brain RNA sequencing data
Olukayode Ayodeji Sosina, Matthew Nguyen Tran, Kristen R. Maynard, Ran Tao, Margaret A. Taub, Keri Martinowich, Stephen Andrew Semick, Bryan C. Quach, Daniel R. Weinberger, Thomas M. Hyde et al. · 2021 · F1000Research
Coronally advanced flap associated with a connective tissue graft for the treatment of multiple recession defects in mandibular posterior teeth.
Massimo De Sanctis, Nicola Baldini, Cecilia Goracci, Giovanni Zucchelli · 2011 · PubMed
swCAM: estimation of subtype-specific expressions in individual samples with unsupervised sample-wise deconvolution
Lulu Chen, Chiung-Ting Wu, Chia-Hsiang Lin, Rujia Dai, Chunyu Liu, Robert C. Clarke, Guoqiang Yu, Jennifer E. Van Eyk, David M. Herrington, Yue Wang · 2021 · Bioinformatics
Neuro-evo-devo in the single cell sequencing era
Nikolaos Konstantinides, Sophie Degabriel, Claude Desplan · 2018 · Current Opinion in Systems Biology
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Rishika Kundra, Christopher Martin Dobson, Michele Vendruscolo · 2020 · iScience
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Sabine Wessels, Thomas Muley, Petros Christopoulos, Michael A. Meister, Ingrid Heinzmann-Groth, Arne Warth, Esther Herpel, Simone Hummler, Ursula Klingmüller, Jonas Kuon et al. · 2020 · Translational Lung Cancer Research
Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain by scGESTALT
Bushra Raj, Daniel E. Wagner, Aaron McKenna · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
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Nagy, Corina, Maitra, Malosree, Tanti, Arnaud, Suderman, Matthew, Théroux, Jean-Francois, Mechawar, Naguib, Ragoussis, Jiannis, Turecki, Gustavo · 2018
Microglial NF-κB drives tau spreading and toxicity in a mouse model of tauopathy
Chao Wang, Li Fan, Lihong Zhan et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
Cell type specific transcriptomic differences in depression show similar patterns between males and females but implicate distinct cell types and genes
Malosree Maitra, Haruka Mitsuhashi, Reza Rahimian et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
Characterization and Optimization of Multiomic Single-Cell Epigenomic Profiling
Letícia Sandoval, Wazim Mohammed Ismail, Amelia Mazzone, Mihai Gabriel Dumbrava, Jenna A. Fernandez, Amik Munankarmy, Terra L. Lasho, Moritz Binder, Vernadette A. Simon, Kwan‐Hyun Kim et al. · 2023 · Genes
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Donghang Zhang, Yali Chen, Yiyong Wei, Hongjun Chen, Yujie Wu, Lin Wu, Jin Li, Qiyang Ren, Changhong Miao, Tao Zhu et al. · 2023 · eLife
The Society for Immunotherapy of Cancer Perspective on Tissue-Based Technologies for Immuno-Oncology Biomarker Discovery and Application
Anne Monette, Adriana Aguilar‐Mahecha, Emre Altınmakas, Mathew G. Angelos, Nima Assad, Gerald Batist, Praveen K. Bommareddy, Diana Lucia Bonilla, Christoph H. Borchers, SE Church et al. · 2024 · Clinical Cancer Research
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Tomoyoshi Tamura, Changde Cheng, Ana B. Villaseñor-Altamirano, Kohei Yamada, Kohei Ikeda, Kei Hayashida, Jaivardhan A. Menon, Xi Dawn Chen, Hattie Chung, Jack Varon et al. · 2024 · Science Translational Medicine