Massively parallel single-nucleus RNA-seq with DroNc-seq

Habib, Naomi, Avraham-Davidi, Inbal, Basu, Anindita, Burks, Tyler, Shekhar, Karthik, Hofree, Matan, Choudhury, Sourav R, Aguet, François +6 more·2017·Nature Methods
DOI 10.1038/nmeth.4407

Cited by (1,000)

Items 401–500 of 1,000

  1. Single-nucleus transcriptome analysis reveals cell type-specific molecular signatures across reward circuitry in the human brain
    Matthew Nguyen Tran, Kristen R. Maynard, Abby Spangler et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  2. Cell-subtype specific effects of genetic variation in the aging and Alzheimer cortex
    Fujita, Masashi, Gao, Zongmei, Zeng, Lu, McCabe, Cristin, White, Charles C., Ng, Bernard, Green, Gilad Sahar, Rozenblatt-Rosen, Orit, Phillips, Devan, Amir-Zilberstein, Liat et al. · 2022
  3. The cholesterol transporter NPC1 is essential for epigenetic regulation and maturation of oligodendrocyte lineage cells
    Thaddeus J. Kunkel, Alice Townsend, Kyle A. Sullivan, Jean Merlet, Edward Howard Schuchman, Daniel Jacobson, Andrew P. Lieberman · 2023 · Nature Communications
  4. Differential excitatory vs inhibitory SCN expression at single cell level regulates brain sodium channel function in neurodevelopmental disorders
    Juanjiangmeng Du, Sean Simmons, Andreas Brunklaus, Xian Adiconis, Cynthia C. Hession, Zhanyan Fu, Yinqing Li, Reut Shema, Rikke Steensbjerre Møller, Boaz Barak et al. · 2019 · European Journal of Paediatric Neurology
  5. PsychENCODE and beyond: transcriptomics and epigenomics of brain development and organoids
    Alexandre Jourdon, Soraya Scuderi, Davide Capauto, Alexej S. Abyzov, Flora Maria Vaccarino · 2020 · Neuropsychopharmacology
  6. Single-cell and spatial transcriptomics approaches of cardiovascular development and disease
    Robert Roth, Soochi Kim, Jeesu Kim, Siyeon Rhee · 2020 · BMB Reports
  7. Defining best practices for tissue procurement in immuno-oncology clinical trials: consensus statement from the Society for Immunotherapy of Cancer Surgery Committee
    Brian Gastman, Piyush Kumar Agarwal, Adam Berger, Genevieve Marie Boland, Stephen Broderick, Lisa Helene Butterfield, David R. Byrd, Peter Edward Fecci, Robert Louis Ferris, Yuman Fong et al. · 2020 · Journal for ImmunoTherapy of Cancer
  8. Sfaira accelerates data and model reuse in single cell genomics
    Fischer, David S., Dony, Leander, König, Martin, Moeed, Abdul, Zappia, Luke, Heumos, Lukas, Tritschler, Sophie, Holmberg, Olle, Aliee, Hananeh, Theis, Fabian J. · 2021 · Genome Biology
  9. A protocol to extract cell-type-specific signatures from differentially expressed genes in bulk-tissue RNA-seq
    Ángel Márquez-Galera, Liset Menéndez de la Prida, José P. López‐Atalaya · 2022 · STAR Protocols
  10. Longitudinal single-cell transcriptional dynamics throughout neurodegeneration in SCA1
    Leon Tejwani, Neal G. Ravindra, Chang‐Woo Lee, Yubao Cheng, Billy Nguyen, Kimberly P. Luttik, Luhan Ni, Shupei Zhang, Logan M Morrison, John T. Gionco et al. · 2023 · Neuron
  11. Regional and age‐related diversity of human mature oligodendrocytes
    Moein Yaqubi, Julia Xiao Xuan Luo, Salma Baig, Qiao‐Ling Cui, Kevin Petrecca, Haritha L. Desu, Catherine Larochelle, Elia Afanasiev, Jeffery Alan Hall, Roy Dudley et al. · 2022 · Glia
  12. Methods and challenges in the analysis of single-cell RNA-sequencing data
    Pablo G. Cámara · 2017 · Current Opinion in Systems Biology
  13. Integrative Cluster Analysis of Whole Hearts Reveals Proliferative Cardiomyocytes in Adult Mice
    Anne-Marie Galow, Markus Wolfien, Paula Müller, Madeleine Bartsch, Ronald M. Brunner, Andreas Hoeflich, Olaf Wolkenhauer A, Robert David, Tom Goldammer · 2020 · Cells
  14. Advances in single-cell sequencing: insights from organ transplantation
    Ying Wang, Jianye Wang, Angelika Schnieke, Konrad Fischer · 2021 · Military Medical Research
  15. Single nucleus RNA-sequencing: how it's done, applications and limitations
    Juliane Fischer, Thomas Ayers · 2021 · Emerging Topics in Life Sciences
  16. Genetic influences on hub connectivity of the human connectome
    Aurina Arnatkevičiūtė, Ben Fulcher, Stuart Oldham, Jeggan Tiego, Casey Paquola, Zachary F. Gerring, Kevin M. Aquino, Ziarih Hawi, Beth P. Johnson, Gareth Ball et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  17. Reduced progranulin increases tau and α-synuclein inclusions and alters mouse tauopathy phenotypes via glucocerebrosidase
    Hideyuki Takahashi, Sanaea Z. Bhagwagar, Sarah Helena Nies, Hongping Ye, Xianlin Han, Marius Chiasseu, Guilin Wang, Ian R. Mackenzie, Stephen M. Strittmatter · 2024 · Nature Communications
  18. Multiple Facets of Marine Invertebrate Conservation Genomics
    Jose Victor Lopez, Bishoy Kamel, Mónica Medina, Timothy M. Collins, Iliana B. Baums · 2018 · Annual Review of Animal Biosciences
  19. Elucidating the cellular dynamics of the brain with single-cell RNA sequencing
    Aida Cardona‐Alberich, Manon Tourbez, Sarah F. Pearce, Christopher R. Sibley · 2021 · RNA Biology
  20. MicroRNA-21 expression in single living cells revealed by fluorescence and SERS dual-response microfluidic droplet platform
    Dan Sun, Fanghao Cao, Xuan Yi, Hongyan Zhu, Guohua Qi, Weiqing Xu, Shuping Xu · 2022 · Lab on a Chip
  21. Transcriptomic and Cellular Decoding of Regional Brain Vulnerability to Neurodevelopmental Disorders
    Jakob Seidlitz, Ajay Nadig, Siyuan Liu, Richard A. I. Bethlehem, Petra E. Vértes, Sarah Elizabeth Morgan, František Váša, Rafael Romero-García, François M. Lalonde, LIV S. CLASEN et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  22. The Genome-Wide Binding Profile for Human RE1 Silencing Transcription Factor Unveils a Unique Genetic Circuitry in Hippocampus
    James C. McGann, Michael A. Spinner, Saurabh K. Garg†, Karin Müllendorff, Randall L. Woltjer, Gail Mandel · 2021 · Journal of Neuroscience
  23. Microfluidics Facilitates the Development of Single-Cell RNA Sequencing
    Yating Pan, Wenjian Cao, Ying Mu, Qiangyuan Zhu · 2022 · Biosensors
  24. A community-based transcriptomics classification and nomenclature of neocortical cell types
    Yuste, Rafael, Hawrylycz, Michael, Aalling, Nadia, Aguilar-Valles, Argel, Arendt, Detlev, Armañanzas, Ruben, Ascoli, Giorgio A., Bielza, Concha, Bokharaie, Vahid, Bergmann, Tobias Borgtoft et al. · 2020 · Nature Neuroscience
  25. Fibroblast-Mediated Macrophage Recruitment Supports Acute Wound Healing
    V.M. Amuso, M. Haas, Paula O. Cooper, R. Chatterjee, S. Hafiz, S. Salameh, C. Gohel, Miguel F. Mazumder, Violet Josephson, S. S. Kleb et al. · 2024 · Journal of Investigative Dermatology
  26. Simplified Drop-seq workflow with minimized bead loss using a bead capture and processing microfluidic chip
    Marjan Biočanin, Johannes Bues, Riccardo Dainese, Esther Amstad, Bart Deplancke · 2019 · Lab on a Chip
  27. Defining the nature of human pluripotent stem cell-derived interneurons via single-cell analysis
    Thomas F. Allison, Justin Langerman, Shan Sabri, Marcos Otero‐García, Andrew J. Lund, John C. Huang, Xiaofei Wei, Ranmal Aloka Samarasinghe, Damon Polioudakis, István Módy et al. · 2021 · Stem Cell Reports
  28. A risk-reward examination of sample multiplexing reagents for single cell RNA-Seq
    Daniel V. Brown, Casey J. A. Anttila, Ling Ling, Patrick Grave, Tracey M. Baldwin, Ryan B. Munnings, Anthony J. Farchione, Vanessa L. Bryant, Amelia Dunstone, Christine Biben et al. · 2024 · Genomics
  29. Genetic Identification of Cell Types Underlying Brain Complex Traits Yields Novel Insights Into the Etiology of Parkinson’s Disease
    Julien Bryois, Nathan Skene, Thomas Folkmann Hansen et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  30. Single Cell Sequencing Reveals Glial Specific Responses to Tissue Processing & Enzymatic Dissociation in Mice and Humans
    Marsh, Samuel E., Kamath, Tushar, Walker, Alec J., Dissing-Olesen, Lasse, Hammond, Timothy R., Young, Adam M.H., Abdulraouf, Abdulraouf, Nadaf, Naeem, Dufort, Connor, Murphy, Sarah et al. · 2020
  31. Single-nucleus RNA sequencing demonstrates an autosomal dominant Alzheimer’s disease profile and possible mechanisms of disease protection
    Maria Camila Almeida, Sarah J. Eger, C. He, Morgane Audouard, Arina A. Nikitina, Stella M.K. Glasauer, Dasol Han, Bárbara Mejía‐Cupajita, Juliana Acosta‐Uribe, Nelson David Villalba‐Moreno et al. · 2024 · Neuron
  32. Astrogliopathy in Tauopathies
    Isidró Ferrer · 2018 · Neuroglia
  33. Nuclei isolation from surgically resected human hippocampus
    Fatma Ayhan, Connor Douglas, Bradley Charles Lega, Geneviève Konopka · 2021 · STAR Protocols
  34. Single-nucleus cross-tissue molecular reference maps to decipher disease gene function
    G. Eraslan, Eugene Drokhlyansky, Shankara K. Anand et al. · 2021 · bioRxiv
  35. Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data
    Martin Jinye Zhang, Kangcheng Hou, Bogdan Paşaniuc et al. · 2021 · Research Square
  36. Transcriptional cartography integrates multiscale biology of the human cortex
    Konrad Wagstyl, Sophie Adler, Jakob Seidlitz, Simon Vandekar, Travis T. Mallard, Richard Dear, Alex R. DeCasien, Theodore Daniel Satterthwaite, Siyuan Liu, Petra E. Vértes et al. · 2024 · eLife
  37. Spatial and temporal pattern of structure–function coupling of human brain connectome with development
    Guozheng Feng, Yiwen Wang, Weijie Huang, Haojie Chen, Jian Cheng, Ni Shu · 2024 · eLife
  38. Transcriptional dynamics orchestrating the development and integration of neurons born in the adult hippocampus
    Natalí B. Rasetto, Damiana Giacomini, Ariel A. Berardino, Tomás Vega Waichman, Maximiliano S. Beckel, Daniela J. Di Bella, Juliana R. Brown, M. Georgina Davies-Sala, Chiara Gerhardinger, Dieter Chichung Lie et al. · 2024 · Science Advances
  39. Localization of brain neuronal IL-1R1 reveals specific neural circuitries responsive to immune signaling
    Daniel P. Nemeth, Xiaoyu Liu, Marianne C. Monet, Haichen Niu, Gabriella Maxey, Matthew Scott Schrier, Maria I. Smirnova, Samantha McGovern, Anu Herd, Damon J. DiSabato et al. · 2024 · Journal of Neuroinflammation
  40. Recent advances in deciphering oligodendrocyte heterogeneity with single-cell transcriptomics
    Lukáš Valihrach, Zuzana Matusova, Daniel Žucha, Ruslan Klassen, Sarka Benesova, Pavel Abaffy, Mikael Kubista, Miroslava Anděrová · 2022 · Frontiers in Cellular Neuroscience
  41. FLOW-MAP: a graph-based, force-directed layout algorithm for trajectory mapping in single-cell time course datasets
    Melissa E. Ko, Corey M. Williams, Kristen Fread, Sarah M. Goggin, Rohit S. Rustagi, Gabriela K. Fragiadakis, Garry P. Nolan, Eli R. Zunder · 2020 · Nature Protocols
  42. The Power of Single‐Cell Analysis for the Study of Liver Pathobiology
    Angela Chu, Joel D. Schilling, Kevin R. King, Ariel E. Feldstein · 2020 · Hepatology
  43. Methanol fixation is the method of choice for droplet-based single-cell transcriptomics of neural cells
    Ana Gutiérrez-Franco, Franz Arnold Ake, Mohamed N. Hassan, Natalie Chaves Cayuela, Loris Mularoni, Mireya Plass · 2023 · Communications Biology
  44. New Perspectives for Anatomical and Molecular Studies of Kisspeptin Neurons in the Aging Human Brain
    Erik Hrabovszky, Szabolcs Takács, Balázs Göcz, Katalin Skrapits · 2019 · Neuroendocrinology
  45. Pathologic and clinical correlates of region-specific brain GFAP in Alzheimer’s disease
    Jared Phillips, Rebecca L. Winfree, Mabel Seto, Julie A. Schneider, David A. Bennett, Logan C. Dumitrescu, Timothy J. Hohman · 2024 · Acta Neuropathologica
  46. Gene-expression correlates of the oscillatory signatures supporting human episodic memory encoding
    Stefano Berto, Miles R. Fontenot, Sarah E. Seger, Fatma Ayhan, Emre Caglayan, Ashwinikumar Kulkarni, Connor Douglas, Carol A. Tamminga, Bradley Charles Lega, Geneviève Konopka · 2021 · Nature Neuroscience
  47. Allele-specific analysis reveals exon- and cell-type-specific regulatory effects of Alzheimer’s disease-associated genetic variants
    Liang He, Yury Loika, Alexander M. Kulminski · 2022 · Translational Psychiatry
  48. mDrop-Seq: Massively Parallel Single-Cell RNA-Seq of Saccharomyces cerevisiae and Candida albicans
    Ryan Dohn, Bingqing Xie, Rebecca Back, Alan Selewa, Heather Eckart, Reeta P. Rao, Anindita Basu · 2021 · Vaccines
  49. Consensus molecular environment of schizophrenia risk genes in coexpression networks shifting across age and brain regions
    Giulio Pergola, Madhur Parihar, Leonardo Sportelli, Rahul A. Bharadwaj, Christopher Borcuk, Eugenia Radulescu, Loredana Bellantuono, Giuseppe Blasi, Qiang Chen, Joel E. Kleinman et al. · 2023 · Science Advances
  50. Next-Generation Neuroimmunology: New Technologies to Understand Central Nervous System Autoimmunity
    Gerd Meyer zu Hörste, Catharina C. Groß, Luisa Klotz, Nicholas Schwab, Heinz Wiendl · 2020 · Trends in Immunology
  51. Nuclei multiplexing with barcoded antibodies for single-nucleus genomics
    Jellert T. Gaublomme, Bo Li, Cristin Aubin, Abigail Knecht, Eugene Drokhlyansky, Nicholas Van Wittenberghe, Julia Waldman, Danielle Ashley Dionne, Lan Nguyễn, Philip L. De Jager et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  52. The enteric nervous system of the human and mouse colon at a single-cell resolution
    Eugene Drokhlyansky, Christopher S. Smillie, Nicholas Van Wittenberghe, Maria Ericsson, Gabriel Kenneth Griffin, Danielle Ashley Dionne, Michael S. Cuoco, Max N. Goder-Reiser, Tatyana Y. Sharova, Andrew J. Aguirre et al. · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  53. Anti-acetylated-tau immunotherapy is neuroprotective in tauopathy and brain injury
    C Bravo, Karen Krukowski, Sarah Barker, Chao Wang, Yaqiao Li, Li Fan, Edwin Vázquez‐Rosa, Min‐Kyoo Shin, Man Ying Wong, Louise D. McCullough et al. · 2024 · Molecular Neurodegeneration
  54. C9orf72 hexanucleotide repeat expansions impair microglial response in ALS
    Pegah Masrori, Baukje Bijnens, Laura Fumagalli, Kristofer Davie, Suresh Kumar Poovathingal, Tim S. Meese, Annet Storm, Nicole Hersmus, Raheem Fazal, Diede van den Biggelaar et al. · 2025 · Nature Neuroscience
  55. Use of Single-Cell -Omic Technologies to Study the Gastrointestinal Tract and Diseases, From Single Cell Identities to Patient Features
    Mirazul Islam, Bob Chen, Jeffrey M. Spraggins, Ryan Kelly, Ken S. Lau · 2020 · Gastroenterology
  56. Cancer systems immunology
    Nathan Edward Reticker-Flynn, Edgar G. Engleman · 2020 · eLife
  57. Micro‐ and Nano‐Devices for Studying Subcellular Biology
    Michael J. Siedlik, Zijian Yang, Parnika S. Kadam · 2020 · Small
  58. NanoSINC-seq dissects the isoform diversity in subcellular compartments of single cells
    Yusuke Oguchi, Yuka Ozaki, Mahmoud N. Abdelmoez, Hirofumi Shintaku · 2021 · Science Advances
  59. Immunotherapy in the Treatment of Urothelial Bladder Cancer: Insights From Single-Cell Analysis
    Jingyu Zang, Kaiyan Ye, Fei Yang, Ruiyun Zhang, Haige Chen, Guanglei Zhuang · 2021 · Frontiers in Oncology
  60. Estrogen-related Receptor Alpha (ERRα) is Required for PGC-1α-dependent Gene Expression in the Mouse Brain
    Laura J. McMeekin, Kathlene L. Joyce, Lisa M. Miller Jenkins, Briana M Bohannon, K.D. Patel, Andrew S. Bohannon, A. Patel, Stephanie N. Fox, Micah S. Simmons, Jeremy J. Day et al. · 2021 · Neuroscience
  61. Adult neurogenesis in the primate hippocampus
    Ye Li, 中山大学中山眼科中心, 广东 广州 510060, 中国, Nana Xu, Zhao-Zhe Hao, Sheng Liu, 广东省脑功能与疾病重点实验室, 广东 广州 510080, 中国 · 2023 · 动物学研究
  62. Dissociation protocols used for sarcoma tissues bias the transcriptome observed in single-cell and single-nucleus RNA sequencing
    Danh D. Truong, Salah-Eddine Lamhamedi-Cherradi, Robert W. Porter, Sandhya Krishnan, Jyothishmathi Swaminathan, Amber Gibson, Alexander J. Lazar, John Andrew Livingston, Vidya Gopalakrishnan, Nancy Beatriz Gordon et al. · 2023 · BMC Cancer
  63. HDAC1 and HDAC6 are essential for driving growth in IDH1 mutant glioma
    Matthew C. Garrett, Rebecca Albano, Troy Carnwath, Lubayna S. Elahi, Catherine A. Behrmann, Merissa Pemberton, Daniel Woo, Eric Justin O'Brien, Brett VanCauwenbergh, John Peter Perentesis et al. · 2023 · Scientific Reports
  64. Bayesian correlation is a robust gene similarity measure for single-cell RNA-seq data
    Daniel Sánchez‐Taltavull, Theodore J. Perkins, Noëlle Dommann, Nicolas Mélin, Adrian Keogh, Daniel Candinas, Deborah Stroka, Guido Beldi · 2020 · NAR Genomics and Bioinformatics
  65. Single-nucleus RNA-seq identifies Huntington disease astrocyte states
    Osama Al‐Dalahmah, Alexander A. Sosunov, A Shaik · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  66. Simultaneous single cell measurements of intranuclear proteins and gene expression
    Hattie Chung, Christopher N. Parkhurst, Emma M. Magee · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  67. The molecular evolution of spermatogenesis across mammals
    Florent Murat, Noe Mbengue, Sofia Boeg Winge et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  68. Single-cell analysis of prenatal and postnatal human cortical development
    Dmitry Velmeshev, Yonatan Perez, Zihan Yan et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  69. The shared genetic risk architecture of neurological and psychiatric disorders: a genome-wide analysis
    Olav Bjerkehagen Smeland, Gleda Kutrolli, Shahram Bahrami, Vera Fominykh, Nadine Parker, Guy Hindley, Linn Nilsen Rødevand, Piotr Pawel Jaholkowski, Markos Tesfaye, Pravesh Parekh et al. · 2023 · medRxiv
  70. Transcriptional and cellular signatures of cortical morphometric remodelling in chronic pain
    Martins, Daniel, Dipasquale, Ottavia, Veronese, Mattia, Turkheimer, Federico, Loggia, Marco L., McMahon, Stephen, Howard, Matthew A., Williams, Steven C.R. · 2022 · Pain
  71. Practical Considerations for Single‐Cell Genomics
    Claire Regan, Jonathan B. Preall · 2022 · Current Protocols
  72. Claustral neurons projecting to frontal cortex restrict opioid consumption
    Anna Terem, Yonatan Fatal, Noa Peretz‐Rivlin, Hagit Turm, Shahar Shohat Koren, Danny Kitsberg, Reut Ashwal-Fluss, Diptendu Mukherjee, Naomi Habib, Ami Citri · 2023 · Current Biology
  73. Repopulated spinal cord microglia exhibit a unique transcriptome and contribute to pain resolution
    Lauren J. Donovan, Caldwell M. Bridges, Amy R. Nippert, Meng Wang, Shaogen Wu, Thomas E. Forman, Elena S. Haight, Nolan A. Huck, Sabrina F. Bond, Claire E. Jordan et al. · 2024 · Cell Reports
  74. A systems-level framework for anti-epilepsy drug discovery
    Michael R. Johnson, Rafal Marian Kaminski · 2019 · Neuropharmacology
  75. Variation among intact tissue samples reveals the core transcriptional features of human CNS cell classes
    Kevin W. Kelley, Hiromi Inoue, Anna Victoria Molofsky · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  76. Advances in mixed cell deconvolution enable quantification of cell types in spatially-resolved gene expression data
    Patrick J. Danaher, Young‐Mi Kim, Brenn Nelson, Maddy Griswold, Zhi Gang Yang, Erin Piazza, Joseph Beechem · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  77. Spatially resolved transcriptomics reveals the architecture of the tumor/microenvironment interface
    Miranda V. Hunter, Reuben M. Moncada, Joshua M. Weiss, Itai Yanai, Richard Mark White · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  78. Single-cell multiomics atlas of organoid development uncovers longitudinal molecular programs of cellular diversification of the human cerebral cortex
    Ana Uzquiano, Amanda J. Kedaigle, Martina Pigoni, Bruna da Silveira Paulsen, Xian Adiconis, Kwanho Kim, Tyler Faits, Surya Nagaraja, Noelia Antón-Bolaños, Chiara Gerhardinger et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  79. Tissue‐selective regulation of protein homeostasis and unfolded protein response signalling in sporadic ALS
    Luigi Montibeller, Li Yi Tan, Joo Kyung Kim, Praveen Paul, Jacqueline de Belleroche · 2020 · Journal of Cellular and Molecular Medicine
  80. Mitochondrial-nuclear cross-talk in the human brain is modulated by cell type and perturbed in neurodegenerative disease
    Aine Fairbrother-Browne, Aminah Tasnim Ali, Regina Hertfelder Reynolds, Sonia García-Ruiz, David Zhang, Zhongbo Chen, Mina Ryten, Alan Hodgkinson · 2021 · Communications Biology
  81. Single-Cell and Single-Nucleus RNAseq Analysis of Adult Neurogenesis
    Alena Kalinina, Diane C. Lagace · 2022 · Cells
  82. Resveratrol attenuated fatty acid synthesis through MAPK-PPAR pathway in red tilapia
    Quanjie Li, Yao Zheng, Yi Sun · 2023 · Comparative Biochemistry and Physiology Part C Toxicology & Pharmacology
  83. Transcriptional cartography integrates multiscale biology of the human cortex
    Konrad Wagstyl, Sophie Adler, Jakob Seidlitz, Simon Vandekar, Travis T. Mallard, Richard Dear, Alex R. DeCasien, Theodore Daniel Satterthwaite, Siyuan Liu, Petra E. Vértes et al. · 2023 · eLife
  84. Adult Hippocampal Neurogenesis in the Human Brain: Updates, Challenges, and Perspectives
    Sophie Simard, Natalie Matosin, Naguib Mechawar · 2024 · The Neuroscientist
  85. New transcriptomic tools to understand testis development and functions
    Estelle Lecluze, Bernard Jégou, Antoine Dominique Rolland, Frédéric Chalmel · 2018 · Molecular and Cellular Endocrinology
  86. Droplet CAR-Wash: continuous picoliter-scale immunocapture and washing
    Steven R. Doonan, Melissa Lin, Ryan C. Bailey · 2019 · Lab on a Chip
  87. Pinpointing Cell Identity in Time and Space
    Anca Flavia Savulescu, Caron Jacobs, Yutaka Negishi, Laurianne Davignon, Musa M. Mhlanga · 2020 · Frontiers in Molecular Biosciences
  88. Insights from the Applications of Single-Cell Transcriptomic Analysis in Germ Cell Development and Reproductive Medicine
    Hyeonwoo La, Hyunjin Yoo, Eun Joo Lee, Nguyen Xuan Thang, Hee Jin Choi, Jeongheon Oh, Ji Hyun Park, Kwonho Hong · 2021 · International Journal of Molecular Sciences
  89. Integrated Analysis of Cortex Single-Cell Transcriptome and Serum Proteome Reveals the Novel Biomarkers in Alzheimer’s Disease
    Qing-Shan Yu, Wan-Qing Feng, Lanlan Shi, Rui‐Ze Niu, Jia‐Bao Liu · 2022 · Brain Sciences
  90. Distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
    A. Lun, Samantha J. Riesenfeld, T. Andrews · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  91. Single-cell anatomical analysis of human hippocampus and entorhinal cortex uncovers early-stage molecular pathology in Alzheimer’s disease
    José Dávila-Velderrain, Hansruedi Mathys, Shahin Mohammadi, Brad Ruzicka, Xueqiao Jiang, Ayesha P. Ng, David Alan Bennett, Li‐Huei Tsai, M Kellis · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  92. Gene-Expression Profiling to Decipher Breast Cancer Inter- and Intratumor Heterogeneity
    Alexander Swarbrick, Aranzazu Fernández-Martínez, Charles M. Perou · 2023 · Cold Spring Harbor Perspectives in Medicine
  93. Genomics yields biological and phenotypic insights into bipolar disorder
    Kevin Sean O’Connell, Maria Koromina, Tracey van der Veen, Toni A. Boltz, Friederike Sophie David, Jessica Mei Kay Yang, Keng‐Han Lin, Xin Wang, Jonathan R. I. Coleman, Brittany L. Mitchell et al. · 2023 · medRxiv
  94. The use of single-cell RNA-seq to study heterogeneity at varying levels of virus–host interactions
    Sharmada Swaminath, Alistair B. Russell · 2024 · PLoS Pathogens
  95. Dissecting endothelial cell heterogeneity with new tools
    Jing Zhong, Rongrong Gao, Xin Zhang, Jiaxin Yang, Yang Liu, Jinjin Ma, Qi Chen · 2025 · Cell Regeneration
  96. Cross-species analysis of adult hippocampal neurogenesis reveals human-specific gene expression but convergent biological processes
    Yi Fu Zhou, Yijing Su, Qian Yang, Jiaqi Li, Hong Yan, Taosha Gao, Yanqing Zhong, Xueting Ma, Mengmeng Jin, Xinglan Liu et al. · 2025 · Nature Neuroscience
  97. A genome-wide analysis of the shared genetic risk architecture of complex neurological and psychiatric disorders
    Olav Bjerkehagen Smeland, Gleda Kutrolli, Shahram Bahrami, Vera Fominykh, Nadine Parker, Julian Fuhrer, Guy Hindley, Linn Nilsen Rødevand, Piotr Pawel Jaholkowski, Markos Tesfaye et al. · 2025 · Nature Neuroscience
  98. Ultra-rare and common genetic variant analysis converge to implicate negative selection and neuronal processes in the aetiology of schizophrenia
    Wonuola A. Akingbuwa, Anke R. Hammerschlag, Meike Bartels, Michel Guillaume Nivard, Christel Maria Middeldorp · 2022 · Molecular Psychiatry
  99. Integrative insights and clinical applications of single-cell sequencing in cancer immunotherapy
    Zaoqu Liu, Huanyun Li, Qin Dang, Siyuan Weng, Mengjie Duo, Jinxiang Lv, Xinwei Han · 2022 · Cellular and Molecular Life Sciences
  100. Dissecting the human immune system with single cell RNA sequencing technology
    Gang Xu, Yang Liu, Hanjie Li, Lei Liu, Shuye Zhang, Zheng Zhang · 2019 · Journal of Leukocyte Biology