The DOI matches its Crossref record; 131 of the 131 references it cites were found in a registry or an index.
Evolution of primate gene expression
Abstract
It has been suggested that evolutionary changes in gene expression account for most phenotypic differences between species, in particular between humans and apes. What general rules can be described governing expression evolution? We find that a neutral model where negative selection and divergence time are the major factors is a useful null hypothesis for both transcriptome and genome evolution. Two tissues that stand out with regard to gene expression are the testes, where positive selection has exerted a substantial influence in both humans and chimpanzees, and the brain, where gene expression has changed less than in other organs but acceleration might have occurred in human ancestors.
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“However, comparative microarray studies have shown a high degree of conservation across species in overall gene expression, although there is considerable upregulation of brain gene expression in humans compared to non-human primates (Khaitovich et al., 2006; Preuss et al., 2004; Vallender et al., 2008).”
From Large-Scale Cellular-Resolution Gene Profiling in Human Neocortex Reveals Species-Specific Molecular Signatures (2012) · cites this paper as Khaitovich et al., 2006
Citations
Cites
Evolutionary trees from DNA sequences: A maximum likelihood approach.
Felsenstein, J. (1981) · Journal of Molecular Evolution · doi:10.1007/bf01734359 · Cited by 14,571
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
Tajima, F. (1989) · Genetics · doi:10.1093/genetics/123.3.585 · Cited by 14,056
Genome sequencing in microfabricated high-density picolitre reactors
Margulies, M., Egholm, M., Altman, W. E., Attiya, S., Bader, J. S., Bemben, L. A., Berka, J., Braverman, M. S., Chen, Y.-J., Chen, Z., et al. (2005) · Nature · doi:10.1038/nature03959 · Cited by 7,693
The Neutral Theory of Molecular Evolution
Kimura, M. (1979) · Scientific American · doi:10.1038/scientificamerican1179-98 · Cited by 7,687
The Neutral Theory of Molecular Evolution
Kimura, M. (1983) · Cambridge University Press eBooks · doi:10.1017/cbo9780511623486 · Cited by 6,300
A haplotype map of the human genome
The International HapMap Consortium (2005) · Nature · doi:10.1038/nature04226 · Cited by 5,858
On the Origin of Species by Means of Natural Selection
Livezey, R. L., & Darwin, C. R. (1953) · The American Midland Naturalist · doi:10.2307/2485224 · Cited by 5,431
The Design and Implementation of FFTW3
Frigo, M., & Johnson, S. G. (2005) · Proceedings of the IEEE · doi:10.1109/jproc.2004.840301 · Cited by 5,086
Statistical tests of neutrality of mutations.
Fu, Y., & Li, W. (1993) · Genetics · doi:10.1093/genetics/133.3.693 · Cited by 4,067
Evolutionary Rate at the Molecular Level
KIMURA, M. (1968) · Nature · doi:10.1038/217624a0 · Cited by 3,747
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Panasiuk, J. (2021) · Logopedia · doi:10.24335/swj7-9c40
Ewolucjonizm darwinowski w świetle genomiki
Koonin, E. V. (2021) · Filozoficzne Aspekty Genezy · doi:10.53763/fag.2018.15.154
Penso-Dolfin, L., Haerty, W., Hindle, A. G., & Palma, F. D. (2020) · Research Square · doi:10.21203/rs.3.rs-15753/v1
(2009) · Wiley eBooks · doi:10.1002/9780470551455.biblio
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Barreiro, L. B. (2019) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.734279151.793560355
Ohta, T. (2008) · Encyclopedia of Life Sciences · doi:10.1002/9780470015902.a0005301.pub2
Prochiantz, A. (2010) · L’annuaire du Collège de France · doi:10.4000/annuaire-cdf.309
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Osada, N., Sugano, S., & Suzuki, Y. (2008) · Wiley eBooks · doi:10.1002/9780470015902.a0020748
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Babbitt, C. C., & Wray, G. A. (2008) · Encyclopedia of Life Sciences · doi:10.1002/9780470015902.a0020769
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(2007) · CRC Press eBooks · doi:10.1201/9781420008326.ch17
Ohta, T. (2016) · Elsevier eBooks · doi:10.1016/b978-0-12-809633-8.06779-0 · Cited by 1
Penso-Dolfin, L., Haerty, W., Hindle, A. G., & Palma, F. D. (2020) · Research Square · doi:10.21203/rs.3.rs-15753/v2
El problema del discurso acerca de la individualidad genética humana
Ordóñez Vásquez, A. (2020) · doi:10.11144/javeriana.10554.6199
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Ali, M., Khan, P., Mahmood, M., Han, J., Afzal, G., Qadeer, I., Azmal, S. A., El-Mouhty, N. R. A., Mahmoud, S. F., Jafri, I., et al. (2023) · Journal of Zoological Systematics & Evolutionary Research · doi:10.1155/2023/6693488
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Schneor, L., & Hagai, T. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.05.26.595927
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Brown, G. R., & Laland, K. N. (2024) · Oxford University Press eBooks · doi:10.1093/oso/9780198908203.003.0006
Brown, G. R., & Laland, K. N. (2024) · Oxford University Press eBooks · doi:10.1093/oso/9780198908203.002.0007
Comparing and integrating approaches
Brown, G. R., & Laland, K. N. (2024) · Oxford University Press eBooks · doi:10.1093/oso/9780198908203.003.0008
Brown, G. R., & Laland, K. N. (2024) · Oxford University Press eBooks · doi:10.1093/oso/9780198908203.002.0003
A history of evolution and human behaviour
Brown, G. R., & Laland, K. N. (2024) · Oxford University Press eBooks · doi:10.1093/oso/9780198908203.003.0002
Brown, G. R., & Laland, K. N. (2024) · Oxford University Press eBooks · doi:10.1093/oso/9780198908203.003.0001
Brown, G. R., & Laland, K. N. (2024) · Oxford University Press eBooks · doi:10.1093/oso/9780198908203.003.0003
Brown, G. R., & Laland, K. N. (2024) · Oxford University Press eBooks · doi:10.1093/oso/9780198908203.002.0005
The use of deidentified organ donor testes for research
Pryzhkova, M. V., Skinner, M. W., Candelaria, J. I., Wellard, S. R., & Jordan, P. W. (2025) · Andrology · doi:10.1111/andr.70008
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Somiglianze e differenze genetiche nei primati e loro implicazioni
Novelletto, A. (2007) · RENDICONTI LINCEI · doi:10.1007/bf02974465
Penso-Dolfin, L., Haerty, W., Hindle, A. G., & Palma, F. D. (2020) · Figshare · doi:10.6084/m9.figshare.12134685
Glaser‐Schmitt, A., & Parsch, J. (2026) · Molecular Biology and Evolution · doi:10.1093/molbev/msag081 · Cited by 1
Phylograms better fit neutrally evolving traits than chronograms
Latrille, T., Gaboriau, T., & Salamin, N. (2026) · Evolution Letters · doi:10.1093/evlett/qrag015
Taxonomic context and genomic architecture jointly shape expression divergence across animals
LaBoone, P. A., Piya, A. A., & Assis, R. (2026) · Evolution · doi:10.1093/evolut/qpag094
Young, R. L., Weitekamp, C. A., Triki, Z., Su, Y., Beman, A. G., Petershack, M. A., Bshary, R., & Hofmann, H. A. (2026) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2026.0722 · Cited by 3
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Pourmajidian, M., Misic, B., & Dagher, A. (2026) · Appetite · doi:10.1016/j.appet.2026.108800
Metadata
- Authors
- Khaitovich, P., Enard, W., Lachmann, M., & Pääbo, S.
- Affiliations
- Max Planck Society (DE)
- Corresponding author
- Pääbo, Svante
- Venue
- Nature Reviews Genetics
- Published
- 2006-09
- Volume
- 7
- Issue
- 9
- Pages
- 693-702
- ISSN
- 1471-0056 (ISSN-L)
- 1471-0064
- OpenAlex
- W2099451735
- Cited by
- 341
- References
- 131
- Citations by year
- 2026: 7 · 2025: 9 · 2024: 23 · 2023: 12 · 2022: 9 · 2021: 12 · 2020: 12 · 2019: 11 · 2018: 13 · 2017: 13 · 2016: 17 · 2015: 13 · 2014: 21 · 2013: 24 · 2012: 27
- FWCI
- 2.51
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Reviews Genetics (publishedVersion)
- PubMed (publishedVersion)
- Max Planck Institute for Plasma Physics (submittedVersion)
- MPG.PuRe (Max Planck Society) (submittedVersion)
- Funders
- Bundesministerium für Bildung und Forschung
- Max-Planck-Gesellschaft
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Chromosomal and Genetic Variations
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Keywords
- gene expression evolution, primate evolution, human-chimpanzee divergence, transcriptome evolution, genome evolution, positive selection, negative selection, divergence time, testis, brain, phenotypic evolution, neutral model
- MeSH terms
- Animals, Brain, Biological Evolution, Humans, Male, Mutation, Primates, Selection, Genetic, Species Specificity, Testis, Gene Expression, Genome, Human, Evolution, Molecular, Oligonucleotide Array Sequence Analysis
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