Cis-regulatory elements: Molecular mechanisms and evolutionary processes underlying divergence

Wittkopp, Patricia J., Kalay, Gizem·2012·Nature Reviews Genetics

DOI 10.1038/nrg3095

Cited by (1,247)

Items 101–200 of 1,247

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J. Fear, Luis G. León-Novelo, A. Morse, Alison R. Gerken, Kjong Van Lehmann, J. Tower, S. Nuzhdin, L. McIntyre · 2016 · Genetics
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Liuling Pei, Xianhui Huang, Zhenping Liu, Xuehan Tian, Jiaqi You, Jianying Li, David D. Fang, Keith Lindsey, Longfu Zhu, Xianlong Zhang et al. · 2022 · Genome biology
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Steven M. Van Belleghem, Angelo Alberto Ruggieri, Carolina Concha, Luca Livraghi, Laura Hebberecht, Edgardo Santiago Rivera, James G. Ogilvie, Joseph J. Hanly, Ian A. Warren, Silvia Planas et al. · 2023 · Science
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Brenden Barco, Yoseph Kim, Nicole K. Clay · 2019 · Nature Communications
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Seyedeh Masoumeh Fotoukkiaii, Nicky Wybouw, Andre H. Kurlovs, Dimitra Tsakireli, Spiros A. Pergantis, Richard M. Clark, John G. VONTAS, Thomas Van Leeuwen · 2021 · PLoS Genetics
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Campbell Rolian · 2020 · Wiley Interdisciplinary Reviews Developmental Biology
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Hans Gerd Nothwang · 2016 · Progress in Neurobiology
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Asano Ishikawa, Makoto Kusakabe, Kohta Yoshida, Mark Ravinet, Takashi Makino, Atsushi Toyoda, Asao Fujiyama, Jun Kitano · 2017 · Evolution
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Marc Tollis, Elizabeth D. Hutchins, Jessica Stapley, Shawn M. Rupp, Walter L. Eckalbar, Inbar Maayan, Eris Lasku, Carlos R. Infante, Stuart R. Dennis, Joel A Robertson et al. · 2018 · Genome Biology and Evolution
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Zefu Lu, William A. Ricci, Robert J. Schmitz, Xiaoyu Zhang · 2018 · Current Opinion in Plant Biology
Natural variation in non-coding regions underlying phenotypic diversity in budding yeast
Francisco Salinas, Carl G. de Boer, Valentina Abarca, Verónica García, Mara Cuevas, Sebastián Araos, Luis Fernando Larrondo, Claudio Martı́nez, Francisco A. Cubillos · 2016 · Scientific Reports
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Charles A. Steward, Alasdair P. J. Parker, Berge A. Minassian, Sanjay M. Sisodiya, Adam Frankish, Jennifer Harrow · 2017 · Genome Medicine
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Abid Ullah, Muhammad Tahir ul Qamar, Mohammad Nisar, Hazrat Ali, Gul Rahim, Aamir Hamid Khan, Kashif Hayat, Saeed Ahmed, Waqar Ali, Aziz Khan et al. · 2020 · Molecular Biology Reports
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Ting Zhou, Caipeng Yue, Jinyong Huang, Jia-qian Cui, Ying Liu, Wenming Wang, Chuang Tian, Yingpeng Hua · 2020 · BMC Plant Biology
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Min Wang, Bowei Chen, Wei Zhou, Linan Xie, Lishan Wang, Yonglan Zhang, Qingzhu Zhang · 2021 · BMC Genomics
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Jacob M. Daane, Nicolas Rohner, Peter Konstantinidis, Sergej Djuranović, Matthew P. Harris · 2015 · Molecular Biology and Evolution
ChIP-Seq-Annotated Heliconius erato Genome Highlights Patterns of cis-Regulatory Evolution in Lepidoptera
James J. Lewis, Karin R. L. van der Burg, Anyi Mazo‐Vargas, Robert D. Reed · 2016 · Cell Reports
Modeling temporal and hormonal regulation of plant transcriptional response to wounding
Bethany M. Moore, Yun Sun Lee, Peipei Wang, Christina Brady Del Azodi, Erich Grotewold A, Shin‐Han Shiu · 2021 · The Plant Cell
Sequencing of Pax6 Loci from the Elephant Shark Reveals a Family of Pax6 Genes in Vertebrate Genomes, Forged by Ancient Duplications and Divergences
Vydianathan Ravi, Shipra Bhatia, Philippe Emmanuel Gautier, Felix Loosli, Boon-Hui Tay, Alice Tay, Emma Murdoch, Pedro Coutinho, Veronica van Heyningen, Sydney Brenner et al. · 2013 · PLoS Genetics