Genomic islands in pathogenic and environmental microorganisms

Escherichia Coli and Salmonella: Typhimurium Cellular and Molecular Biology

Neidhardt, F. C., Ingraham, J. L., Low, K. B., Magasanik, B., Schaechter, M., & Umbarger, H. E. (1987) · Cited by 4,097

Escherichia Coli and Salmonella: Typhimurium Cellular and Molecular Biology

Neidhardt, F. C., & Ingraham, J. L. (1987) · Medical Entomology and Zoology · Cited by 4,089

Escherichia coli and Salmonella typhimurium: Cellular and molecular biology

Lejeune, P. (1988) · Biochimie · doi:10.1016/0300-9084(88)90119-8 · Cited by 4,086

Lateral gene transfer and the nature of bacterial innovation

Ochman, H., Lawrence, J. G., & Groisman, E. A. (2000) · Nature · doi:10.1038/35012500 · Cited by 3,816

Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)

Bentley, S. D., Chater, K. F., Cerdeño-Tárraga, A. M., Challis, G. L., Thomson, N. R., James, K., Harris, D. E., Quail, M. A., Kieser, H. M., Harper, D., et al. (2002) · Nature · doi:10.1038/417141a · Cited by 3,226

Type III Protein Secretion Systems in Bacterial Pathogens of Animals and Plants

Hueck, C. J. (1998) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.62.2.379-433.1998 · Cited by 2,420

Genome sequence of enterohaemorrhagic Escherichia coli O157:H7

Perna, N. T., Plunkett, G., Burland, V., Mau, B., Glasner, J. D., Rose, D. J., Mayhew, G. F., Evans, P. S., Gregor, J., Kirkpatrick, H. A., et al. (2001) · Nature · doi:10.1038/35054089 · Cited by 2,035

Whole genome sequencing of meticillin-resistant Staphylococcus aureus

Kuroda, M., Ohta, T., Uchiyama, I., Baba, T., Yuzawa, H., Kobayashi, I., Cui, L., Oguchi, A., Aoki, K.-I., Nagai, Y., et al. (2001) · The Lancet · doi:10.1016/s0140-6736(00)04403-2 · Cited by 1,950

DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae

Heidelberg, J. F., Eisen, J. A., Nelson, W. C., Clayton, R. A., Gwinn, M. L., Dodson, R. J., Haft, D. H., Hickey, E. K., Peterson, J. D., Umayam, L. A., et al. (2000) · Nature · doi:10.1038/35020000 · Cited by 1,871

Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli

Welch, R. A., Burland, V., Plunkett, G., Redford, P., Roesch, P. L., Rasko, D. A., Buckles, E. L., Liou, S., Boutin, A., Hackett, J. D., et al. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.252529799 · Cited by 1,523

Enterobacteriaceae

Jenkins, C., Rentenaar, R. J., Landraud, L., & Brisse, S. (2016) · Elsevier eBooks · doi:10.1016/b978-0-7020-6285-8.00180-5 · Cited by 39

Large-insert genome analysis technology detects structural variation in Pseudomonas aeruginosa clinical strains from cystic fibrosis patients

Hayden, H. S., Gillett, W., Saenphimmachak, C., Lim, R., Zhou, Y., Jacobs, M. A., Chang, J., Rohmer, L., D’Argenio, D. A., Palmieri, A., et al. (2008) · Genomics · doi:10.1016/j.ygeno.2008.02.005 · Cited by 29

Dynamics of the SetCD-Regulated Integration and Excision of Genomic Islands Mobilized by Integrating Conjugative Elements of the SXT/R391 Family

Daccord, A., Mursell, M., Poulin‐Laprade, D., & Burrus, V. (2012) · Journal of Bacteriology · doi:10.1128/jb.01093-12 · Cited by 30

Evolutionary and functional diversity of the Pseudomonas type IVa pilin island

Giltner, C. L., Rana, N. K., Lunardo, M. N., Hussain, A. Q., & Burrows, L. L. (2010) · Environmental Microbiology · doi:10.1111/j.1462-2920.2010.02327.x · Cited by 29

Occurrence and significance of pathogenicity and fitness islands in environmental vibrios

Klein, S. L., Pipes, S. E., & Lovell, C. R. (2018) · AMB Express · doi:10.1186/s13568-018-0704-2 · Cited by 29

Impact of pathogenicity islands in bacterial diagnostics

Oelschlaeger, T. A., & Hacker, J. H. (2004) · Apmis · doi:10.1111/j.1600-0463.2004.apm11211-1214.x · Cited by 29

Characterization of tccP2 carried by atypical enteropathogenic Escherichia coli

Ooka, T., Vieira, M. ́. A. M., Ogura, Y., Beutin, L., Ragione, R. M. L., van Diemen, P. M., Stevens, M. P., Aktan, Í., Cawthraw, S. A., Best, A., et al. (2007) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2007.00707.x · Cited by 29

The Origin, Evolution, and Local and Global Dissemination of Antimicrobial Resistance

Aarestrup, F. M. (2019) · ASM Press eBooks · doi:10.1128/9781555817534.ch20 · Cited by 31

Genetic identification of a high-affinity Ni transporter and the transcriptional response to Ni deprivation in Synechococcus sp. strain WH8102

Dupont, C. L., Johnson, D. A., Phillippy, K., Paulsen, I. T., Brahamsha, B., & Palenik, B. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.01739-12 · Cited by 28

Transcriptional noise and exaptation as sources for bacterial sRNAs

Jose, B. R., Gardner, P. P., & Barquist, L. (2019) · Biochemical Society Transactions · doi:10.1042/bst20180171 · Cited by 29

The Tetracycline Resistance Gene, tet(W) in Bifidobacterium animalis subsp. lactis Follows Phylogeny and Differs From tet(W) in Other Species

Nøhr-Meldgaard, K., Struve, C., Ingmer, H., & Agersø, Y. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.658943 · Cited by 28

That's no moon, it's a Starship: Giant transposons driving fungal horizontal gene transfer

Bucknell, A., & McDonald, M. C. (2023) · Molecular Microbiology · doi:10.1111/mmi.15118 · Cited by 28

Molecular Analysis of Asymptomatic Bacteriuria Escherichia coli Strain VR50 Reveals Adaptation to the Urinary Tract by Gene Acquisition

Beatson, S. A., Zakour, N. L. B., Totsika, M., Forde, B. M., Watts, R. E., Mabbett, A. N., Szubert, J. M., Sarkar, S., Phan, M., Peters, K. M., et al. (2015) · Infection and Immunity · doi:10.1128/iai.02810-14 · Cited by 28

Molecular evolution of the lysine decarboxylase-defective phenotype in

Casalino, M. (2005) · International Journal of Medical Microbiology · doi:10.1016/j.ijmm.2004.11.001 · Cited by 28

On detection and assessment of statistical significance of Genomic Islands

Chatterjee, R., Chaudhuri, K., & Chaudhuri, P. (2008) · BMC Genomics · doi:10.1186/1471-2164-9-150 · Cited by 28

Detecting Laterally Transferred Genes

Azad, R. K., & Lawrence, J. G. (2012) · Methods in molecular biology · doi:10.1007/978-1-61779-582-4_10 · Cited by 29

Sequential induction of three recombination directionality factors directs assembly of tripartite integrative and conjugative elements

Haskett, T. L., Terpolilli, J. J., Ramachandran, V. K., Verdonk, C. J., Poole, P. S., O’Hara, G. W., & Ramsay, J. P. (2018) · PLoS Genetics · doi:10.1371/journal.pgen.1007292 · Cited by 28

Prevalence of antibiotic resistance and virulence genes in the biofilms from an aquifer recharged with stormwater

Sidhu, J. P. S., Gupta, V. V. S. R., Stange, C., Ho, J., Harris, N. N., Barry, K. E., Gonzalez, D., Nostrand, J. D. V., Zhou, J. Z., Page, D. W., et al. (2020) · Water Research · doi:10.1016/j.watres.2020.116269 · Cited by 28

Horizontal transfer of Yersinia high‐pathogenicity island by the conjugative RP4 attB target‐presenting shuttle plasmid

Antonenka, U., Nölting, C., Heesemann, J., & Rakin, A. (2005) · Molecular Microbiology · doi:10.1111/j.1365-2958.2005.04722.x · Cited by 28

Pathogenicity island integrase cross‐talk: a potential new tool for virulence modulation

Manson, J. M., & Gilmore, M. S. (2006) · Molecular Microbiology · doi:10.1111/j.1365-2958.2006.05262.x · Cited by 28

The genome and genetics of a high oxidative stress tolerant Serratia sp. LCN16 isolated from the plant parasitic nematode Bursaphelenchus xylophilus

Vicente, C. S. L., Nascimento, F. X., Ikuyo, Y., Cock, P., Mota, M. M., & Hasegawa, K. (2016) · BMC Genomics · doi:10.1186/s12864-016-2626-1 · Cited by 27

Comparative genomic analysis of Vibrios yields insights into genes associated with virulence towards C. gigas larvae

Kehlet-Delgado, H., Häse, C. C., & Mueller, R. (2020) · BMC Genomics · doi:10.1186/s12864-020-06980-6 · Cited by 27

Horizontally acquired regulatory gene activates ancestral regulatory system to promote Salmonella virulence

Choi, J., & Groisman, E. A. (2020) · Nucleic Acids Research · doi:10.1093/nar/gkaa813 · Cited by 27

The ecology of plasmid-coded antibiotic resistance: a basic framework for experimental research and modeling

Zwanzig, M. (2020) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2020.12.027 · Cited by 27

Systematic Detection of Large-Scale Multigene Horizontal Transfer in Prokaryotes

Kloub, L. H., Gosselin, S. P., Fullmer, M. S., Graf, J., Gogarten, J. P., & Bansal, M. S. (2021) · Molecular Biology and Evolution · doi:10.1093/molbev/msab043 · Cited by 27

A Bacterial Backbone: Magnetosomes in Magnetotactic Bacteria

Lefèvre, C., Abreu, F., Lins, U., & Bazylinski, D. (2011) · Springer eBooks · doi:10.1007/978-3-642-18312-6_4 · Cited by 27

Genomics of epidemic pathogens

Georgiades, K. (2012) · Clinical Microbiology and Infection · doi:10.1111/j.1469-0691.2012.03781.x · Cited by 27

Mobilizable genomic islands: going mobile with oriT mimicry

Waldor, M. K. (2010) · Molecular Microbiology · doi:10.1111/j.1365-2958.2010.07365.x · Cited by 28

Fluidized muds: a novel setting for the generation of biosphere diversity through geologic time*

Aller, J. Y., Aller, R. C., Kemp, P. F., CHISTOSERDOV, A. Y., & Madrid, V. M. (2010) · Geobiology · doi:10.1111/j.1472-4669.2010.00234.x · Cited by 27

Reconstructing host range evolution of bacterial plant pathogens using Pseudomonas syringae pv. tomato and its close relatives as a model

Cai, R., Yan, S., Liu, H., Leman, S. C., & Vinatzer, B. A. (2011) · Infection Genetics and Evolution · doi:10.1016/j.meegid.2011.07.012 · Cited by 27

Lateral transfer and GC content of bacterial resistant genes

Hayek, N. (2013) · Frontiers in Microbiology · doi:10.3389/fmicb.2013.00041 · Cited by 29

An Operon of Three Transcriptional Regulators Controls Horizontal Gene Transfer of the Integrative and Conjugative Element ICEclc in Pseudomonas knackmussii B13

Pradervand, N., Sulser, S., Delavat, F., Miyazaki, R., Lamas, I., & van der Meer, J. R. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004441 · Cited by 27

Fibrinogen‐binding and platelet‐aggregation activities of a Lactobacillus salivarius septicaemia isolate are mediated by a novel fibrinogen‐binding protein

Collins, J. W., van Pijkeren, J., Svensson, L., Claesson, M. J., Sturme, M. H. J., Li, Y., Cooney, J. C., van Sinderen, D., Walker, A. W., Parkhill, J., et al. (2012) · Molecular Microbiology · doi:10.1111/j.1365-2958.2012.08148.x · Cited by 29

Interplay of regulatory RNAs and mobile genetic elements in enteric pathogens

Fröhlich, K. S., & Papenfort, K. (2016) · Molecular Microbiology · doi:10.1111/mmi.13428 · Cited by 27

PGI2 Is a Novel SGI1-Relative Multidrug-Resistant Genomic Island Characterized in Proteus mirabilis

Lei, C., Chen, Y., Kong, L., Zeng, J., Wang, Y., Zhang, A., & Wang, H. (2018) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.00019-18 · Cited by 27

Evolution, developmental plasticity, and metabolic disease

Kuzawa, C. W., Gluckman, P. D., Hanson, M. A., & Beedle, A. S. (2007) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199207466.003.0019 · Cited by 27

Non-Gamma-Proteobacteria Gene Islands Contribute to the Xanthomonas Genome

de Lima, W. C., Sluys, M. V., & Menck, C. F. M. (2005) · OMICS A Journal of Integrative Biology · doi:10.1089/omi.2005.9.160 · Cited by 27

Prevalence, structure and expression of urease genes in Shiga toxin-producing Escherichia coli from humans and the environment

Orth‐Höller, D., Grif, K., Dierich, M. P., & Würzner, R. (2006) · International Journal of Hygiene and Environmental Health · doi:10.1016/j.ijheh.2006.06.003 · Cited by 27

Contribution of rubredoxin:oxygen oxidoreductases and hybrid cluster proteins of D esulfovibrio vulgaris H ildenborough to survival under oxygen and nitrite stress

Yurkiw, M., Voordouw, J. K., & Voordouw, G. (2012) · Environmental Microbiology · doi:10.1111/j.1462-2920.2012.02859.x · Cited by 26

Genomic diversity, pathogenicity and antimicrobial resistance of Escherichia coli isolated from poultry in the southern United States

Feng, A., Akter, S., Leigh, S. A., Wang, H., Pharr, G. T., Evans, J. D., Branton, S. L., Pulido-Landínez, M., Pace, L. W., & Wan, X. (2023) · BMC Microbiology · doi:10.1186/s12866-022-02721-9 · Cited by 26

Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13

Gaillard, M., Pradervand, N., Minoia, M., Sentchilo, V., Johnson, D. R., & van der Meer, J. R. (2010) · BMC Microbiology · doi:10.1186/1471-2180-10-153 · Cited by 28

Fate of the H-NS–Repressed bgl Operon in Evolution of Escherichia coli

Sankar, T., Neelakanta, G., Sangal, V., Plum, G., Achtman, M., & Schnetz, K. (2009) · PLoS Genetics · doi:10.1371/journal.pgen.1000405 · Cited by 26

Urinary Tract Infection Molecular Mechanisms and Clinical Translation

Godaly, G., Ambite, I., Puthia, M., Nadeem, A., Ho, J. C. S., Nagy, K., Huang, Y., Rydström, G., & Svanborg, C. (2016) · Pathogens · doi:10.3390/pathogens5010024 · Cited by 26

An Accurate Genomic Island Prediction Method for Sequenced Bacterial and Archaeal Genomes

Wang, D. C. H. (2014) · Journal of Proteomics & Bioinformatics · doi:10.4172/jpb.1000322 · Cited by 26

Lifestyle, diet, and disease: comparative perspectives on the determinants of chronic health risks

Leonard, W. R. (2007) · Oxford University Press eBooks · doi:10.1093/acprof:oso/9780199207466.003.0020 · Cited by 26

Comprehensive Genomic Analysis of Uropathogenic E. coli: Virulence Factors, Antimicrobial Resistance, and Mobile Genetic Elements

Sung, K., Nawaz, M. S., Park, M., Chon, J., Khan, S. A., Alotaibi, K., & Khan, A. A. (2024) · Pathogens · doi:10.3390/pathogens13090794 · Cited by 25

Evidence of horizontal gene transfer between human and animal commensalEscherichia colistrains identified by microarray

Grasselli, E., François, P., Gutacker, M. M., Gettler, B., Benagli, C., Convert, M., Boerlin, P., Schrenzel, J., & Piffaretti, J.-C. (2008) · FEMS Immunology & Medical Microbiology · doi:10.1111/j.1574-695x.2008.00434.x · Cited by 25

Hidden threats in the plastisphere: Carbapenemase-producing Enterobacterales colonizing microplastics in river water

Silva, I., Tacão, M., & Henriques, I. S. (2024) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2024.171268 · Cited by 25

Chapter 3 Genome Evolution in Plant Pathogenic and Symbiotic Fungi

Aguileta, G., Hood, M. E., Refrégier, G., & Giraud, T. (2009) · Advances in botanical research · doi:10.1016/s0065-2296(08)00603-4 · Cited by 25

A genomic island of the sulfate‐reducing bacterium Desulfovibrio vulgaris Hildenborough promotes survival under stress conditions while decreasing the efficiency of anaerobic growth

Johnston, S., Lin, S., Lee, P. L., Caffrey, S. M., Wildschut, J. D., Voordouw, J. K., da Silva, S. M., Pereira, I. A. C., & Voordouw, G. (2008) · Environmental Microbiology · doi:10.1111/j.1462-2920.2008.01823.x · Cited by 25

A Genomic Islet Mediates Flagellar Phase Variation in Escherichia coli Strains Carrying the Flagellin-Specifying Locus flk

Feng, L., Liu, B., Liu, Y., Ratiner, Y. A., Hu, B., Li, D., Zong, X., Xiong, W., & Wang, L. (2008) · Journal of Bacteriology · doi:10.1128/jb.01937-07 · Cited by 25

Reconciling Ecological and Genomic Divergence among Lineages of Listeria under an "Extended Mosaic Genome Concept"

Dunn, K. A., Bielawski, J. P., Ward, T. J., Urquhart, C., & Gu, H. (2009) · Molecular Biology and Evolution · doi:10.1093/molbev/msp176 · Cited by 25

The landscape of coadaptation in Vibrio parahaemolyticus

Cui, Y., Yang, C., Qiu, H., Wang, H., Yang, R., & Falush, D. (2020) · eLife · doi:10.7554/elife.54136 · Cited by 26

Virulence Searcher: a tool for searching raw genome sequences from bacterial genomes for putative virulence factors

Underwood, A. P., Mulder, A., Gharbia, S. E., & Green, J. W. (2005) · Clinical Microbiology and Infection · doi:10.1111/j.1469-0691.2005.01210.x · Cited by 25

Catabolism of Alkylphenols in Rhodococcus via a Meta-Cleavage Pathway Associated With Genomic Islands

Levy‐Booth, D. J., Fetherolf, M. M., Stewart, G. R., Liu, J., Eltis, L. D., & Mohn, W. W. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.01862 · Cited by 24

The novel anti-CRISPR AcrIIA22 relieves DNA torsion in target plasmids and impairs SpyCas9 activity

Forsberg, K. J., Schmidtke, D. T., Werther, R. A., Vazquez-Uribe, R., Hausman, D., Sommer, M. O. A., Stoddard, B. L., Kaiser, B. K., & Malik, H. S. (2021) · PLoS Biology · doi:10.1371/journal.pbio.3001428 · Cited by 25

Magnetotactic Bacteria, Magnetosomes, and Nanotechnology

Bazylinski, D. A., Lefèvre, C. T., & Lower, B. H. (2014) · Springer eBooks · doi:10.1007/978-1-4939-1667-2_3 · Cited by 24

A novel non-homologous recombination-mediated mechanism for Escherichia coli unilateral flagellar phase variation

Liu, B., Hu, B., Zhou, Z., Guo, D., Guo, X., Ding, P., Feng, L., & Wang, L. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks040 · Cited by 24

Lateral Gene Transfer in Evolution

Gophna, U. (2013) · Springer eBooks · doi:10.1007/978-1-4614-7780-8 · Cited by 25

The nitrate‐reduction gene cluster components exert lineage‐dependent contributions to optimization of Sinorhizobium symbiosis with soybeans

Liu, L. X., Li, Q. Q., Zhang, Y., Hu, Y., Jiao, J., Guo, H. J., Zhang, X. X., Zhang, B., Chen, W. X., & Tian, C. F. (2017) · Environmental Microbiology · doi:10.1111/1462-2920.13948 · Cited by 24

Compared analysis of microbial diversity in donkey milk from Xinjiang and Shandong of China through High-throughput sequencing

Luoyizha, W., Wu, X., Zhang, M., Guo, X., Li, H., & Liao, X. (2020) · Food Research International · doi:10.1016/j.foodres.2020.109684 · Cited by 24

ICEEc2, a New Integrative and Conjugative Element Belonging to the pKLC102/PAGI-2 Family, Identified inEscherichia coliStrain BEN374

Roche, D., Fléchard, M., Lallier, N., Répérant, M., Brée, A., Pascal, G., Schouler, C., & Germon, P. (2010) · Journal of Bacteriology · doi:10.1128/jb.00609-10 · Cited by 24

Proteome Remodeling in Response to Sulfur Limitation in “ Candidatus Pelagibacter ubique”

Smith, D. P., Nicora, C., Carini, P., Lipton, M. S. W., Norbeck, A. D., Smith, R. D., & Giovannoni, S. J. (2016) · mSystems · doi:10.1128/msystems.00068-16 · Cited by 24

Chromosomal targeting by CRISPR-Cas systems can contribute to genome plasticity in bacteria

Dy, R. L. V., Pitman, A. R., & Fineran, P. C. (2013) · Mobile Genetic Elements · doi:10.4161/mge.26831 · Cited by 25

Maintenance of host specialisation gradients in ectomycorrhizal symbionts

Voller, F., Ardanuy, A., Taylor, A. F. S., & Johnson, D. (2023) · New Phytologist · doi:10.1111/nph.19395 · Cited by 23

Gene Flow and Molecular Innovation in Bacteria

Ruzzini, A. C., & Clardy, J. (2016) · Current Biology · doi:10.1016/j.cub.2016.08.004 · Cited by 23

Genomic Island-Mediated Horizontal Transfer of the Erythromycin Resistance Gene erm (X) among Bifidobacteria

Li, B., Chen, D., Lin, F., Wu, C., Cao, L., Chen, H., Hu, Y., & Yin, Y. (2022) · Applied and Environmental Microbiology · doi:10.1128/aem.00410-22 · Cited by 23

The Origin, Function, Distribution, Quantification, and Research Advances of Extracellular DNA

Yang, K., Wang, L., Cao, X., Gu, Z., Zhao, G., Ran, M., Yan, Y., Yan, J., Xu, L., Gao, C., et al. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms232213690 · Cited by 23

Insights into the genome of Methylobacterium sp. NMS14P, a novel bacterium for growth promotion of maize, chili, and sugarcane

Jirakkakul, J., Khoiri, A. N., Duangfoo, T., Dulsawat, S., Sutheeworapong, S., Petsong, K., Wattanachaisaereekul, S., Paenkaew, P., Tachaleat, A., Cheevadhanarak, S., et al. (2023) · PLoS ONE · doi:10.1371/journal.pone.0281505 · Cited by 23

Comprehensive blueprint of Salmonella genomic plasticity identifies hotspots for pathogenicity genes

Kushwaha, S. K., Wu, Y., Wu, Y., Anand, A., Sicheritz‐Pontén, T., Millard, A. D., Marathe, S. A., & Nóbrega, F. L. (2024) · PLoS Biology · doi:10.1371/journal.pbio.3002746 · Cited by 23

In silicocomparison of pKLC102-like genomic islands ofPseudomonas aeruginosa

Würdemann, D., & Tümmler, B. (2007) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2007.00891.x · Cited by 23

Dichotomy in the evolution of pathogenicity island and bacteriophage encoded integrases from pathogenic Escherichia coli strains

Napolitano, M. G., Almagro‐Moreno, S., & Boyd, E. F. (2010) · Infection Genetics and Evolution · doi:10.1016/j.meegid.2010.12.003 · Cited by 23

The Contribution of Genomics to the Study of Q Fever

D’Amato, F., Eldin, C., & Raoult, D. (2016) · Future Microbiology · doi:10.2217/fmb.15.137 · Cited by 23

tDNA locus polymorphism and ecto-chromosomal DNA insertion hot-spots are related to the phylogenetic group of Escherichia coli strains

Germon, P., Roche, D., Melo, S., Mignon-Grasteau, S., Dobrindt, U., Hacker, J. H., Schouler, C., & Moulin-Schouleur, M. (2007) · Microbiology · doi:10.1099/mic.0.2006/001958-0 · Cited by 23

CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes

Uchiyama, I., Higuchi, T., & Kobayashi, I. (2006) · BMC Bioinformatics · doi:10.1186/1471-2105-7-472 · Cited by 23

Vibrio parahaemolyticus Epidemiology and Pathogenesis: Novel Insights on an Emerging Foodborne Pathogen

Gavilán, R. G., Caro-Castro, J., Blondel, C. J., & Martínez-Urtaza, J. (2023) · Advances in experimental medicine and biology · doi:10.1007/978-3-031-22997-8_12 · Cited by 22

Potential mobile units drive the horizontal transfer of phytoplasma effector phyllogen genes

Tokuda, R., Iwabuchi, N., Kitazawa, Y., Nijo, T., Suzuki, M., Maejima, K., Oshima, K., NAMBA, S., & Yamaji, Y. (2023) · Frontiers in Genetics · doi:10.3389/fgene.2023.1132432 · Cited by 22

Toxinome—the bacterial protein toxin database

Danov, A., Segev, O., Bograd, A., Ben-Eliyahu, Y., Dotan, N., Kaplan, T., & Levy, A. (2023) · mBio · doi:10.1128/mbio.01911-23 · Cited by 22

Gamma-Mobile-Trio systems are mobile elements rich in bacterial defensive and offensive tools

Mahata, T., Kanarek, K., Goren, M. G., Rameshkumar, M. R., Bosis, E., Qimron, U., & Salomon, D. (2024) · Nature Microbiology · doi:10.1038/s41564-024-01840-5 · Cited by 22

GI-SVM: A sensitive method for predicting genomic islands based on unannotated sequence of a single genome

Lu, B., & Leong, H. W. (2015) · Journal of Bioinformatics and Computational Biology · doi:10.1142/s0219720016400035 · Cited by 22

Potentially Mobile Denitrification Genes Identified in Azospirillum sp. Strain TSH58

Jang, J., Sakai, Y., Senoo, K., & Ishii, S. (2018) · Applied and Environmental Microbiology · doi:10.1128/aem.02474-18 · Cited by 22

Plastic architecture of bacterial genome revealed by comparative genomics of Photorhabdus variants

Gaudriault, S., Pagès, S., Lanois, A., Laroui, C., Teyssier, C., Jumas‐Bilak, E., & Givaudan, A. (2008) · Genome biology · doi:10.1186/gb-2008-9-7-r117 · Cited by 24

Phosphatidylcholine synthesis is essential for HrpZ harpin secretion in plant pathogenic Pseudomonas syringae and non-pathogenic Pseudomonas sp. 593

Xiong, M., Long, D., He, H., Li, Y., Li, Y., & Wang, X. (2013) · Microbiological Research · doi:10.1016/j.micres.2013.06.009 · Cited by 21

Metagenomic Insights Into the Changes of Antibiotic Resistance and Pathogenicity Factor Pools Upon Thermophilic Composting of Human Excreta

Werner, K. A., Schneider, D., Poehlein, A., Diederich, N., Feyen, L., Axtmann, K., Hübner, T., Brüggemann, N., Prost, K., Daniel, R., et al. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.826071 · Cited by 21

Identification of another module involved in the horizontal transfer of the Haemophilus genomic island ICEHin1056

Juhas, M., Dimopoulou, I. D., Robinson, E., Elamin, A. R., Harding, R. M., Hood, D. W., & Crook, D. W. (2013) · Plasmid · doi:10.1016/j.plasmid.2013.05.008 · Cited by 21

Microbiological Quality Control for Laboratory Rodents and Lagomorphs

Shek, W. R., Smith, A. L., & Pritchett‐Corning, K. R. (2015) · Elsevier eBooks · doi:10.1016/b978-0-12-409527-4.00011-0 · Cited by 21

Transformation Asymmetry and the Evolution of the Bacterial Accessory Genome

Apagyi, K., Fraser, C., & Croucher, N. J. (2017) · Molecular Biology and Evolution · doi:10.1093/molbev/msx309 · Cited by 21

Genome Variation in the Model Halophilic Bacterium Salinibacter ruber

González‐Torres, P., & Gabaldón, T. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.01499 · Cited by 21

Gene mobility in microbiomes of the mycosphere and mycorrhizosphere –role of plasmids and bacteriophages

Pratama, A. A., & van Elsas, J. D. (2019) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiz053 · Cited by 21

Carbohydrate metabolic systems present on genomic islands are lost and gained in Vibrio parahaemolyticus

Regmi, A., & Boyd, E. F. (2019) · BMC Microbiology · doi:10.1186/s12866-019-1487-6 · Cited by 21

Characterization of the Genome Feature and Toxic Capacity of a Bacillus wiedmannii Isolate From the Hydrothermal Field in Okinawa Trough

Zhao, Y., Chen, C., Gu, H., Zhang, J., & Sun, L. (2019) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2019.00370 · Cited by 21

Immune Suppressive Extracellular Vesicle Proteins ofLeptopilina heterotomaAre Encoded in the Wasp Genome

Wey, B., Heavner, M. E., Wittmeyer, K. T., Briese, T., Hopper, K. R., & Govind, S. (2019) · G3 Genes Genomes Genetics · doi:10.1534/g3.119.400349 · Cited by 21

An Environmental Escherichia coli Strain Is Naturally Competent to Acquire Exogenous DNA

Riva, F., Riva, V., Eckert, E. M., Colinas, N., Cesare, A. D., Borin, S., Mapelli, F., & Crotti, E. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.574301 · Cited by 21

Antibiotic resistance and virulence factors in Escherichia coli from broiler chicken slaughtered at Tigoni processing plant in Limuru, Kenya.

Adelaide, O. A., Bii, C. C., & Okemo, P. (2008) · PubMed · Cited by 21

Living in a changing environment: Insights into host adaptation in Neisseria meningitidis from comparative genomics

Schoen, C. U., Joseph, B., Claus, H., Vogel, U. F., & Frosch, M. (2007) · International Journal of Medical Microbiology · doi:10.1016/j.ijmm.2007.04.003 · Cited by 21

Delineation of the recombination sites necessary for integration of pathogenicity islands II and III into the Escherichia coli 536 chromosome

Wilde, C., Mazel, D., Hochhut, B., Middendorf, B., Roux, F. L., Carniel, É., Dobrindt, U., & Hacker, J. H. (2008) · Molecular Microbiology · doi:10.1111/j.1365-2958.2008.06145.x · Cited by 21

The Rhizosphere as a Reservoir for Opportunistic Human Pathogenic Bacteria

Berg, G., Alavi, M., Schmid, M., & Hartmann, A. (2013) · Wiley eBooks · doi:10.1002/9781118297674.ch116 · Cited by 23

Whole genome sequencing reveals virulence–mobile element linkages and phylogenetic diversity in multidrug-resistant Escherichia coli from Nigeria

Medugu, N., Aworh, M. K., Iregbu, K. C., Nwajiobi-Princewill, P., Hull, D. M., Harden, L., Singh, P., Obaro, S., Egwuenu, A. J., Adeboye, F., et al. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1579175 · Cited by 20

Genomic analysis of ICEVchBan8: An atypical genetic element in Vibrio cholerae

Taviani, E., Spagnoletti, M., Ceccarelli, D., Haley, B. J., Hasan, N. A., Chen, A., Colombo, M. M., Huq, A., & Colwell, R. R. (2012) · FEBS Letters · doi:10.1016/j.febslet.2012.03.064 · Cited by 20

Whole-genome sequencing of two Streptomyces strains isolated from the sand dunes of Sahara

Zerouki, C., Bensalah, F., Kuittinen, S., Pappinen, A., & Turunen, O. (2021) · BMC Genomics · doi:10.1186/s12864-021-07866-x · Cited by 20

Pathogenicity islands: the tip of the iceberg

Hentschel, U., & Hacker, J. H. (2001) · Microbes and Infection · doi:10.1016/s1286-4579(01)01410-1 · Cited by 139

Ecological fitness, genomic islands and bacterial pathogenicity

Hacker, J. H., & Carniel, É. (2001) · EMBO Reports · doi:10.1093/embo-reports/kve097 · Cited by 622

A Darwinian view of the evolution of microbes

Hacker, J. H., & Carniel, É. (2001) · Cited by 138

Pathogenicity Islands and the Evolution of Microbes

Hacker, J. H., & Kaper, J. B. (2000) · Annual Review of Microbiology · doi:10.1146/annurev.micro.54.1.641 · Cited by 1,298

Genomic Islands in Nutritional Fitness and Adaptation

Tirunagari, P., Choudhary, M., & Deb, S. (2023) · Springer eBooks · doi:10.1007/978-981-19-9342-8_7