Cited by 1,111Alzheimer's disease research and treatmentsDementia and Cognitive Impairment ResearchPrion Diseases and Protein Misfolding

Structural conversion of neurotoxic amyloid-β1–42 oligomers to fibrils

Open access
Ahmed, Mahiuddin, Davis, Judianne, Aucoin, Darryl, Sato, Takeshi, Ahuja, Shivani, Aimoto, Saburo, Elliott, James I, Van Nostrand, William E +1 more·2010·Nature Structural & Molecular Biology

Abstract

The amyloid-beta(1-42) (Abeta42) peptide rapidly aggregates to form oligomers, protofibils and fibrils en route to the deposition of amyloid plaques associated with Alzheimer's disease. We show that low-temperature and low-salt conditions can stabilize disc-shaped oligomers (pentamers) that are substantially more toxic to mouse cortical neurons than protofibrils and fibrils. We find that these neurotoxic oligomers do not have the beta-sheet structure characteristic of fibrils. Rather, the oligomers are composed of loosely aggregated strands whose C termini are protected from solvent exchange and which have a turn conformation, placing Phe19 in contact with Leu34. On the basis of NMR spectroscopy, we show that the structural conversion of Abeta42 oligomers to fibrils involves the association of these loosely aggregated strands into beta-sheets whose individual beta-strands polymerize in a parallel, in-register orientation and are staggered at an intermonomer contact between Gln15 and Gly37.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1038/nsmb.1799

Cites

6 of 6 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

1 retracted

Flagged first, then by citations

Research works printed but not linked: 39

  1. [2]Masters CL Amyloid plaque core protein in Alzheimer disease and Down syndrome Proc Natl Acad Sci USA 82 4245 4249 1985 3159021 PMC397973
  2. [4]Jarrett JT Berger EP Lansbury PT The carboxy terminus of the β-amyloid protein is critical for the seeding of amyloid formation - Implications for the pathogenesis of Alzheimer's disease Biochemistry 32 4693 4697 1993 8490014
  3. [5]Thinakaran G Koo EH Amyloid precursor protein trafficking, processing, and function J Biol Chem 283 29615 29619 2008 18650430 PMC2573065
  4. [6]Roher AE β-amyloid-(1-42) is a major component of cerebrovascular amyloid deposits - Implications for the pathology of Alzheimer-disease Proc Natl Acad Sci USA 90 10836 10840 1993 8248178 PMC47873
  5. [7]Iwatsubo T Saido TC Mann DM Lee VM Trojanowski JQ Full-length amyloid-β (1-42(43)) and amino-terminally modified and truncated amyloid-β 42(43) deposit in diffuse plaques Am J Pathol 149 1823 1830 1996 8952519 PMC1865366
  6. [9]Borchelt DR Familial Alzheimer's disease-linked presenilin 1 variants elevate Abeta1-42/1-40 ratio in vitro and in vivo Neuron 17 1005 1013 1996 8938131
  7. [10]Eckman CB A new pathogenic mutation in the APP gene (1716V) increases the relative proportion of Aβ42(43) Hum Mol Genet 6 2087 2089 1997 9328472
  8. [11]Mayeux R Plasma amyloid beta-peptide 1-42 and incipient Alzheimer's disease Ann Neurol 46 412 416 1999 10482274
  9. [12]Kirschner DA Abraham C Selkoe DJ X-ray-diffraction from Intraneuronal paired helical filaments and extraneuronal amyloid fibers in Alzheimer-disease indicates cross-β conformation Proc Natl Acad Sci USA 83 503 507 1986 3455785 PMC322888
  10. [13]Olofsson A Sauer-Eriksson AE Ohman A The solvent protection of Alzheimer amyloid-β-(1-42) fibrils as determined by solution NMR spectroscopy J Biol Chem 281 477 483 2006 16215229
  11. [14]Lührs T 3D structure of Alzheimer's amyloid-β(1-42) fibrils Proc Natl Acad Sci USA 102 17342 7 2005 16293696 PMC1297669
  12. [15]Balbach JJ Supramolecular structure in full-length Alzheimer's β-amyloid fibrils: Evidence for a parallel β-sheet organization from solid-state nuclear magnetic resonance Biophys J 83 1205 1216 2002 12124300 PMC1302222
  13. [16]Antzutkin ON Leapman RD Balbach JJ Tycko R Supramolecular structural constraints on Alzheimer's β-amyloid fibrils from electron microscopy and solid-state nuclear magnetic resonance Biochemistry 41 15436 15450 2002 12484785
  14. [17]Torok M Structural and dynamic features of Alzheimer's Aβ peptide in amyloid fibrils studied by site-directed spin labeling J Biol Chem 277 40810 40815 2002 12181315
  15. [18]Masuda Y Verification of the C-terminal intramolecular β-sheet in Aβ42 aggregates using solid-state NMR: Implications for potent neurotoxicity through the formation of radicals Bioorg Med Chem Lett 18 3206 3210 2008 18468894
  16. [19]Tycko R Molecular structure of amyloid fibrils: Insights from solid-state NMR Q Rev Biophys 39 1 55 2006 16772049
  17. [20]Paravastua AK Leapman RD Yau WM Tycko R Molecular structural basis for polymorphism in Alzheimer's β-amyloid fibrils Proc Natl Acad Sci USA 105 18349 18354 2008 19015532 PMC2587602
  18. [21]McLean CA Soluble pool of Aβ amyloid as a determinant of severity of neurodegeneration in Alzheimer's disease Ann Neurol 46 860 866 1999 10589538
  19. [22]Lue LF Soluble amyloid β peptide concentration as a predictor of synaptic change in Alzheimer's disease Am J Pathol 155 853 862 1999 10487842 PMC1866907
  20. [26]Caughey B Lansbury PT Protofibrils, pores, fibrils, and neurodegeneration: Separating the responsible protein aggregates from the innocent bystanders Annu Rev Neurosci 26 267 298 2003 12704221
  21. [27]Glabe CG Common mechanisms of amyloid oligomer pathogenesis in degenerative disease Neurobiol Aging 27 570 5 2006 16481071
  22. [28]McGowan E Aβ42 is essential for parenchymal and vascular amyloid deposition in mice Neuron 47 191 199 2005 16039562 PMC1373682
  23. [29]Chen YR Glabe CG Distinct early folding and aggregation properties of Alzheimer amyloid-β peptides Aβ40 and Aβ42 - Stable trimer or tetramer formation by Aβ42 J Biol Chem 281 24414 24422 2006 16809342
  24. [30]Barghorn S Globular amyloid β-peptide1-42 oligomer - a homogenous and stable neuropathological protein in Alzheimer's disease J Neurochem 95 834 847 2005 16135089
  25. [31]Bitan G Vollers SS Teplow DB Elucidation of primary structure elements controlling early amyloid β-protein oligomerization J Biol Chem 278 34882 34889 2003 12840029
  26. [32]Bernstein SL Amyloid-β protein oligomerization and the importance of tetramers and dodecamers in the aetiology of Alzheimer's disease Nature Chemistry 1 326 331 2009 PMC2918915 20703363
  27. [33]Mastrangelo IA High-resolution atomic force microscopy of soluble Aβ42 oligomers J Mol Biol 358 106 119 2006 16499926
  28. [34]Yu L Structural characterization of a soluble amyloid β-peptide oligomer Biochemistry 48 1870 1877 2009 19216516
  29. [35]Gellermann GP Aβ-globulomers are formed independently of the fibril pathway Neurobiol Dis 30 212 220 2008 18353662
  30. [36]Chimon S Evidence of fibril-like β-sheet structures in a neurotoxic amyloid intermediate of Alzheimer's β-amyloid Nat Struct Mol Biol 14 1157 1164 2007 18059284
  31. [37]Sciarretta KL Gordon DJ Petkova AT Tycko R Meredith SC Aβ 40-Lactam(D23/K28) models a conformation highly favorable for nucleation of amyloid Biochemistry 44 6003 6014 2005 15835889
  32. [38]Tarus B Straub JE Thirumalai D Dynamics of Asp23-Lys28 salt-bridge formation in Aβ10-35 monomers J Am Chem Soc 128 16159 16168 2006 17165769
  33. [39]Sato T Inhibitors of amyloid toxicity based on β-sheet packing of Aβ40 and Aβ42 Biochemistry 45 5503 5516 2006 16634632 PMC2593882
  34. [40]Eisenberg D The structural biology of protein aggregation diseases: Fundamental questions and some answers Acc Chem Res 39 568 575 2006 16981672 PMC3017558
  35. [41]Ban T Direct observation of Aβ amyloid fibril growth and inhibition J Mol Biol 344 757 767 2004 15533443
  36. [42]Frydman-Marom A Cognitive-performance recovery of Alzheimer's disease model mice by modulation of early soluble amyloidal assemblies Angew Chem Int Ed Engl 48 1981 6 2009 19035593
  37. [43]Shankar GM Amyloid-β protein dimers isolated directly from Alzheimer's brains impair synaptic plasticity and memory Nat Med 14 837 842 2008 18568035 PMC2772133
  38. [44]Cleary JP Natural oligomers of the amyloid-protein specifically disrupt cognitive function Nat Neurosci 8 79 84 2005 15608634
  39. [46]Crocker E Dipolar assisted rotational resonance NMR of tryptophan and tyrosine in rhodopsin J Biomol NMR 29 11 20 2004 15017136

Cited by

Sorted by citations

Authors
Ahmed, M., Davis, J., Aucoin, D., Sato, T., Ahuja, S., Aimoto, S., Elliott, J. I., Van Nostrand, W. E., & Smith, S. O.
Affiliations
  • Stony Brook University (US)
  • Institute for Protein Research, The University of Osaka (JP)
  • Yale University (US)
Corresponding author
Smith, Steven O
Venue
Nature Structural & Molecular Biology
Published
2010-04-11
Volume
17
Issue
5
Pages
561-567
ISSN
  • 1545-9985 (ISSN-L)
  • 1545-9993
OpenAlex
W1973479349
Cited by
1,111
References
6
Citations by year
2026: 46 · 2025: 47 · 2024: 53 · 2023: 69 · 2022: 50 · 2021: 70 · 2020: 79 · 2019: 78 · 2018: 91 · 2017: 91 · 2016: 97 · 2015: 81 · 2014: 74 · 2013: 61 · 2012: 59
FWCI
39.86
Type
journal article
Language
en
Open access
Locations
  • Nature Structural & Molecular Biology (publishedVersion)
  • PubMed (publishedVersion)
  • PubMed Central (acceptedVersion)
Funders
  • National Science Foundation
  • National Institutes of Health (1s10rr013889-01)
  • U.S. Public Health Service (DBI-9977553)
  • National Institute on Aging (R01AG027317)
  • National Institute of General Medical Sciences (T32GM008444)
  • National Institute of Neurological Disorders and Stroke (R01-NS35781, R01NS035781)
  • National Center for Research Resources (S10 RR 13889)
Topics
  • Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
  • Health Sciences › Medicine › Psychiatry and Mental health › Dementia and Cognitive Impairment Research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Prion Diseases and Protein Misfolding
Keywords
amyloid-beta 42, peptide oligomers, neurotoxicity, Alzheimer's disease, amyloid plaques, pentamer, parallel beta-sheet, protofibrils, turn conformation, cortical neurons
MeSH terms
Alzheimer Disease, Amino Acid Sequence, Animals, Cell Survival, Cells, Cultured, Cold Temperature, Models, Molecular, Molecular Sequence Data, Neurons, Peptide Fragments, Salts, Amyloid beta-Peptides, Protein Structure, Secondary, Nuclear Magnetic Resonance, Biomolecular, Mice, Protein Multimerization

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review