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Cyclic peptide structure prediction and design using AlphaFold2
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Cited by
Boltz-2: Towards Accurate and Efficient Binding Affinity Prediction
Passaro, S., Corso, G., Wohlwend, J., Reveiz, M., Thaler, S., Somnath, V. R., Getz, N., Portnoi, T., Roy, J., Stark, H., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.06.14.659707 · Cited by 665
Unified modeling of 3D molecular generation via atomic interactions with PocketXMol
Peng, X., Guo, R., Guo, F., Wang, Z., Sun, J., Guan, J., Jia, Y., Xu, Y., Huang, Y., Zhang, M., et al. (2026) · Cell · doi:10.1016/j.cell.2026.01.003 · Cited by 22
Parametrically guided design of beta barrels and transmembrane nanopores using deep learning
Kim, D. E., Watson, J. L., Juergens, D., Majumder, S., Sonigra, R., Gerben, S. R., Kang, A., Bera, A. K., Li, X., & Baker, D. (2025) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2425459122 · Cited by 21
Self-citationZhang, C., Xu, Z., Lin, K., Zhu, N., Zhang, C., Xu, W., Guo, J., Su, A., Li, C., & Duan, H. (2025) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.5c00227 · Cited by 12
HighMPNN: A Graph Neural Network Approach for Structure-Constrained Cyclic Peptide Sequence Design
Xu, W., Zhang, C., Shang, T., Mao, Q., Guo, J., & Duan, H. (2026) · IEEE Journal of Biomedical and Health Informatics · doi:10.1109/jbhi.2025.3620163 · Cited by 8
Metadata
- Authors
- Rettie, S. A., Campbell, K. V., Bera, A. K., Kang, A., Kozlov, S., Bueso, Y. F., De La Cruz, J., Ahlrichs, M., Cheng, S., Gerben, S. R., Lamb, M., Murray, A., Adebomi, V., Zhou, G., DiMaio, F., Ovchinnikov, S., & Bhardwaj, G.
- Venue
- Nature Communications
- Published
- 2025-05-21
- Volume
- 16
- Issue
- 1
- ISSN
- 2041-1723
- Cited by
- 102
- References
- 21
- Language
- en
- Licence
- creativecommons.org/licenses/by-nc-nd/4.0 (tdm)
- creativecommons.org/licenses/by-nc-nd/4.0 (vor)
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- Rettie, S. A., Campbell, K. V., Bera, A. K., Kang, A., Kozlov, S., Bueso, Y. F., De La Cruz, J., Ahlrichs, M., Cheng, S., Gerben, S. R., Lamb, M., Murray, A., Adebomi, V., Zhou, G., DiMaio, F., Ovchinnikov, S., & Bhardwaj, G. (2025). Cyclic peptide structure prediction and design using AlphaFold2. Nature Communications. https://doi.org/10.1038/s41467-025-59940-7
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