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An episodic burst of massive genomic rearrangements and the origin of non-marine annelids
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There are many other epigenetic and transcriptomic features of genomes which can impact phenotypes, including DNA methylation, chromatin structure, structural rearrangements, and interactions between RNA, proteins, and their environment.
“These features include DNA methylation, chromatin structure, structural rearrangements (Vargas-Chavez et al. 2025), and the interactions between RNA, proteins, and their environment.”
From From Trees to Traits: A Review of Advances in PhyloG2P Methods and Future Directions (2025) · cites this paper as Vargas-Chavez et al. 2025
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Manni, M., Berkeley, M. R., Seppey, M., Simão, F. A., & Zdobnov, E. M. (2021) · Molecular Biology and Evolution · doi:10.1093/molbev/msab199 · Cited by 6,187
Jaillon, O., Aury, J.-M., Brunet, F., Petit, J.-L., Stange-Thomann, N., Mauceli, E., Bouneau, L., Fischer, C., Ozouf-Costaz, C., Bernot, A., et al. (2004) · Nature · doi:10.1038/nature03025 · Cited by 1,966
The origin of new genes: Glimpses from the young and old
Long, M., Betrán, E., Thornton, K., & Wang, W. (2003) · Nature Reviews Genetics · doi:10.1038/nrg1204 · Cited by 933
Gabriel, L., Brůna, T., Hoff, K. J., Ebel, M., Lomsadze, A., Borodovsky, M., & Stanke, M. (2024) · Genome Research · doi:10.1101/gr.278090.123 · Cited by 676
Progressive Cactus is a multiple-genome aligner for the thousand-genome era
Armstrong, J., Hickey, G., Diekhans, M., Fiddes, I. T., Novak, A. M., Deran, A., Fang, Q., Xie, D., Feng, S., Stiller, J., et al. (2020) · Nature · doi:10.1038/s41586-020-2871-y · Cited by 586
Ancient gene linkages support ctenophores as sister to other animals
Schultz, D. T., Haddock, S. H. D., Bredeson, J. V., Green, R. E., Simakov, O., & Rokhsar, D. S. (2023) · Nature · doi:10.1038/s41586-023-05936-6 · Cited by 362
Deeply conserved synteny and the evolution of metazoan chromosomes
Simakov, O., Bredeson, J., Berkoff, K., Marletaz, F., Mitros, T., Schultz, D. T., O’Connell, B. L., Dear, P., Martinez, D. E., Steele, R. E., et al. (2022) · Science Advances · doi:10.1126/sciadv.abi5884 · Cited by 197
Gene gain and loss across the metazoan tree of life
Fernández, R., & Gabaldón, T. (2020) · Nature Ecology & Evolution · doi:10.1038/s41559-019-1069-x · Cited by 165
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From Trees to Traits: A Review of Advances in PhyloG2P Methods and Future Directions
Macdonald, A. R., James, M. E., Mitchell, J. D., & Holland, B. R. (2025) · Genome Biology and Evolution · doi:10.1093/gbe/evaf150 · Cited by 5
Metadata
- Authors
- Vargas-Chávez, C., Benítez-Álvarez, L., Martínez-Redondo, G. I., Álvarez-González, L., Salces-Ortiz, J., Eleftheriadi, K., Escudero, N., Guiglielmoni, N., Flot, J.-F., Novo, M., Ruiz-Herrera, A., McLysaght, A., & Fernández, R.
- ORCID
- Venue
- Nature Ecology & Evolution
- Published
- 2025-06-18
- Volume
- 9
- Issue
- 7
- Pages
- 1263-1279
- ISSN
- 2397-334X
- Cited by
- 35
- References
- 8
- Language
- en
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