The DOI matches its Crossref record; 120 of the 120 references it cites were found in a registry or an index.
Structures of rhodopsin in complex with G-protein-coupled receptor kinase 1
Open accessAbstract
G-protein-coupled receptor (GPCR) kinases (GRKs) selectively phosphorylate activated GPCRs, thereby priming them for desensitization 1. Although it is unclear how GRKs recognize these receptors 2-4, a conserved region at the GRK N terminus is essential for this process 5-8. Here we report a series of cryo-electron microscopy single-particle reconstructions of light-activated rhodopsin (Rho*) bound to rhodopsin kinase (GRK1), wherein the N terminus of GRK1 forms a helix that docks into the open cytoplasmic cleft of Rho*. The helix also packs against the GRK1 kinase domain and stabilizes it in an active configuration. The complex is further stabilized by electrostatic interactions between basic residues that are conserved in most GPCRs and acidic residues that are conserved in GRKs. We did not observe any density for the regulator of G-protein signalling homology domain of GRK1 or the C terminus of rhodopsin. Crosslinking with mass spectrometry analysis confirmed these results and revealed dynamic behaviour in receptor-bound GRK1 that would allow the phosphorylation of multiple sites in the receptor tail. We have identified GRK1 residues whose mutation augments kinase activity and crosslinking with Rho*, as well as residues that are involved in activation by acidic phospholipids. From these data, we present a general model for how a small family of protein kinases can recognize and be activated by hundreds of different GPCRs.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“We attribute this rise to data qubits leaking into non-computational excited states and anticipate that the inclusion of leakage-removal techniques on data qubits would help to mitigate this rise42,46–48.”
From Suppressing quantum errors by scaling a surface code logical qubit (2023) · cites this paper as [42]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
VMD: visual molecular dynamics
Humphrey, W., Dalke, A., & Schulten, K. (1996) · Journal of Molecular Graphics · doi:10.1016/0263-7855(96)00018-5 · Cited by 66,952
PHENIX : a comprehensive Python-based system for macromolecular structure solution
Adams, P. D., Afonine, P. V., Bunkóczi, G., Chen, V. B., Davis, I. W., Echols, N., Headd, J. J., Hung, L.-W., Kapral, G. J., Grosse-Kunstleve, R. W., et al. (2010) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444909052925 · Cited by 23,716
Scalable molecular dynamics with NAMD
Phillips, J. C., Braun, R., Wang, W., Gumbart, J., Tajkhorshid, E., Villa, E., Chipot, C., Skeel, R. D., Kalé, L., & Schulten, K. (2005) · Journal of Computational Chemistry · doi:10.1002/jcc.20289 · Cited by 16,914
SWISS-MODEL: homology modelling of protein structures and complexes
Waterhouse, A. M., Bertoni, M., Bienert, S., Studer, G., Tauriello, G., Gumienny, R., Heer, F. T., de Beer, T., Rempfer, C., Bordoli, L., et al. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky427 · Cited by 13,248
cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination
Punjani, A., Rubinstein, J. L., Fleet, D. J., & Brubaker, M. A. (2017) · Nature Methods · doi:10.1038/nmeth.4169 · Cited by 11,626
MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy
Zheng, S. Q., Palovcak, E. J., Armache, J., Verba, K. A., Cheng, Y., & Agard, D. A. (2017) · Nature Methods · doi:10.1038/nmeth.4193 · Cited by 7,496
Pérez-Riverol, Y., Csordas, A., Bai, J.-W., Bernal-Llinares, M., Hewapathirana, S., Kundu, D. J., Inuganti, A., Griss, J., Mayer, G., Eisenacher, M., et al. (2018) · Nucleic Acids Res. · doi:10.1093/nar/gky1106 · Cited by 6,216
Crystal Structure of Rhodopsin: A G Protein-Coupled Receptor
Palczewski, K., Kumasaka, T., Hori, T., Behnke, C. A., Motoshima, H., Fox, B. A., Trong, I. L., Teller, D. C., Okada, T., Stenkamp, R. E., et al. (2000) · Science · doi:10.1126/science.289.5480.739 · Cited by 5,637
New tools for automated high-resolution cryo-EM structure determination in RELION-3
Zivanov, J., Nakane, T., Forsberg, B., Kimanius, D., Hagen, W., Lindahl, E., & Scheres, S. (2018) · eLife · doi:10.7554/elife.42166 · Cited by 4,377
Gctf: Real-time CTF determination and correction
Zhang, K. (2015) · Journal of Structural Biology · doi:10.1016/j.jsb.2015.11.003 · Cited by 3,417
Cited by
Sorted by citations
Suppressing quantum errors by scaling a surface code logical qubit
Google Quantum, A. I., Acharya, R., Aleiner, I., Allen, R., Andersen, T. I., Ansmann, M., Arute, F., Arya, K., Asfaw, A., Atalaya, J., et al. (2023) · Nature · doi:10.1038/s41586-022-05434-1 · Cited by 1,103
K S, U. (2025) · Zenodo (CERN European Organization for Nuclear Research) · doi:10.5281/zenodo.18067974 · Cited by 773
Realizing repeated quantum error correction in a distance-three surface code
Krinner, S., Lacroix, N., Remm, A., Di Paolo, A., Genois, E., Leroux, C., Hellings, C., Lazar, S., Swiadek, F., Herrmann, J., et al. (2022) · Nature · doi:10.1038/s41586-022-04566-8 · Cited by 686
Realizing topologically ordered states on a quantum processor
Satzinger, K. J., Liu, Y.-J., Smith, A., Knapp, C., Newman, M., Jones, C., Chen, Z., Quintana, C., Mi, X., Dunsworth, A., et al. (2021) · Repository@Nottingham (University of Nottingham) · doi:10.5281/zenodo.5570481 · Cited by 424
Demonstration of fault-tolerant universal quantum gate operations
Postler, L., Heuβen, S., Pogorelov, I., Rispler, M., Feldker, T., Meth, M., Marciniak, C. D., Stricker, R., Ringbauer, M., Blatt, R., et al. (2022) · Nature · doi:10.1038/s41586-022-04721-1 · Cited by 287
Metadata
- Authors
- Chen, Q., Plasencia, M., Li, Z., Mukherjee, S., Patra, D., Chen, C.-L., Klose, T., Yao, X.-Q., Kossiakoff, A. A., Chang, L., Andrews, P. C., & Tesmer, J. J. G.
- Affiliations
- Purdue University West Lafayette (US)
- University of Michigan (US)
- University of Chicago (US)
- Georgia State University (US)
- Corresponding author
- Tesmer, John J. G.
- ORCID
- Venue
- Nature
- Published
- 2021-07-14
- Volume
- 595
- Issue
- 7868
- Pages
- 600-605
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- PMC
- PMC8607881
- OpenAlex
- W3181632501
- Cited by
- 152
- References
- 96
- Citations by year
- 2026: 25 · 2025: 23 · 2024: 33 · 2023: 28 · 2022: 32 · 2021: 11
- FWCI
- 8.15
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- DigitalCommons@UNO (submittedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- IUScholarWorks (Indiana University) (submittedVersion)
- Funders
- National Science Foundation (1517617)
- American Heart Association (19POST34450193)
- Walther Cancer Foundation
- Purdue University
- National Institutes of Health
- National Heart, Lung, and Blood Institute (R01HL122416, R01HL071818)
- National Cancer Institute (R01CA221289, R01CA254402)
- National Institute of General Medical Sciences (R01GM095832, R01GM105942, R01GM105920, R01GM109896, R01GM117372)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Receptor Mechanisms and Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Photoreceptor and optogenetics research
- Keywords
- rhodopsin, GRK1, GPCR desensitization, receptor phosphorylation, electrostatic interactions, anionic phospholipids
- MeSH terms
- Amino Acid Sequence, Animals, Binding Sites, Cattle, Rhodopsin, Signal Transduction, Protein Structure, Tertiary, Cryoelectron Microscopy, G-Protein-Coupled Receptor Kinase 1
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review