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Plant gene editing through de novo induction of meristems
Open accessAbstract
Plant gene editing is typically performed by delivering reagents such as Cas9 and single guide RNAs to explants in culture. Edited cells are then induced to differentiate into whole plants by exposure to various hormones. The creation of edited plants through tissue culture is often inefficient, time-consuming, works for only limited species and genotypes, and causes unintended changes to the genome and epigenome. Here we report two methods to generate gene-edited dicotyledonous plants through de novo meristem induction. Developmental regulators and gene-editing reagents are delivered to somatic cells of whole plants. This induces meristems that produce shoots with targeted DNA modifications, and gene edits are transmitted to the next generation. The de novo induction of gene-edited meristems sidesteps the need for tissue culture and promises to overcome a bottleneck in plant gene editing.
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“Injection of Agrobacterium tumefaciens carrying the development regulators WUS2 and SHOOT MERISTEMLESS (STM) into tobacco seedlings led to the development of gene-edited shoots with heritable mutations (Maher et al., 2020).”
From Genetic resources and precise gene editing for targeted improvement of barley abiotic stress tolerance (2023) · cites this paper as Maher et al., 2020
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“De novo induction of geneedited meristems also avoids the tissue culture step and can be induced in aseptically grown seedlings and soil-grown plants (Maher et al., 2020).”
From Genetic resources and precise gene editing for targeted improvement of barley abiotic stress tolerance (2023) · cites this paper as Maher et al., 2020
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“Genetic modification of meristem (SAM) allows the transmission of modifications to flowers and seeds, and ultimately, to future generations [20].”
BackgroundInfluentialApplications and challenges of harnessing genome editing in oilseed crops
Vaikuntapu, P. R., & Kumar, V. D. (2023) · Journal of Plant Biochemistry and Biotechnology · doi:10.1007/s13562-022-00821-1 · Cited by 12
“…particle bombardment delivery of CRISPR/Cas reagents (Demirer et al. 2020; Banakar et al. 2020), de-novo meristematic microinjection of developmental regulators with gene-editing reagents (Maher et al. 2020), use of viral vectors (Ellison et al. 2020) and CRISPR-combo system (Pan et al. 2022).”
Nagle, M. F., Yuan, J., Kaur, D., Ma, C., Peremyslova, E., Jiang, Y., de Rivera, A. N., Jawdy, S. S., Chen, J., Feng, K., et al. (2024) · G3 Genes Genomes Genetics · doi:10.1093/g3journal/jkae026 · Cited by 12
“…spp. (Deng et al. 2009; Liu et al. 2018; Pan et al. 2022 ), in many cases with the same MRs or their homologs proving effective, and suggesting at least some level of mechanistic conservation across both in vitro and in planta path - ways (Deng et al. 2009; Maher et al. 2020; Lian et al. 2022).”
BackgroundMajumder, S., Sarkar, C., Datta, K., & Datta, S. K. (2020) · Industrial Crops and Products · doi:10.1016/j.indcrop.2020.112620 · Cited by 12
Liu, Y., Liu, S., Deng, Y., You, C., Zhang, W., Zhou, J., Chen, X., Gao, L., & Tang, Y. (2020) · Environmental and Experimental Botany · doi:10.1016/j.envexpbot.2020.104207 · Cited by 12
Multigene engineering in plants: Technologies, applications, and future prospects
Rajput, R., Boone, B. A., Mandlik, R., Islam, M. T., Qi, Y., Wang, J., Barrangou, R., Sozzani, R., Eckert, C. A., Tuskan, G. A., et al. (2025) · Biotechnology Advances · doi:10.1016/j.biotechadv.2025.108697 · Cited by 11
Acha, G., Vergara, R., Muñoz, M., Mora, R., Aguirre, C., Muñoz, M., Kalazich, J., & Humberto Prieto, E. (2021) · Plants · doi:10.3390/plants10091882 · Cited by 11
“However, success in protoplast protocols is far from routine in the current plant tissue culture state of the art, and regular gene transfer procedures, based mostly on regeneration protocols from multicellular explants such as leaves, internodes, and somatic embryos, represent a conditioning factor for gene editing w…”
BackgroundThe Secrets of Meristems Initiation: Axillary Meristem Initiation and Floral Meristem Initiation
Yang, Q., Yuan, C., Cong, T., & Zhang, Q. (2023) · Plants · doi:10.3390/plants12091879 · Cited by 11
“…role in maintaining the meris-tematic ability of the AM or FM [7], and, based on the totipotency of plant cells [145], the ectopic expression of specific DRs in leaf cells can change their developmental fate, re-induce meristem, and ultimately obtain transgenic plants without tissue culture [8].”
BackgroundInfluentialZhang, X., Liang, S., Luo, B., Zhou, Z., Bao, J., Fang, R., Wang, F., Song, X., Liao, Z., Chen, G. J., et al. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms241311190 · Cited by 11
“In the case of tobacco plants transfected by ZmWus2, developmental abnormalities like curled leaves were observed [16].”
BackgroundDirected mutagenesis in plants through genome editing using guide RNA library
Dutta, S., Paul, D., Das, A., Kumar, S., Roy, A., Barua, A., & Chinnusamy, V. (2024) · The Nucleus · doi:10.1007/s13237-024-00481-7 · Cited by 11
Appreciating animal induced pluripotent stem cells to shape plant cell reprogramming strategies
Wittmer, J., & Heidstra, R. (2024) · Journal of Experimental Botany · doi:10.1093/jxb/erae264 · Cited by 11
Cell-penetrating peptide: A powerful delivery tool for DNA-free crop genome editing
Wu, H., Zhang, K., Zhang, Z., Wang, J., Jia, P., Cong, L., Li, J., Duan, Y., Ke, F., Zhang, F., et al. (2022) · Plant Science · doi:10.1016/j.plantsci.2022.111436 · Cited by 11
Genome editing of medicinal plants: Advances, challenges, and prospects
Chen, W., Shi, Y., Lv, Z., & Chen, W. (2026) · Journal of Integrative Plant Biology · doi:10.1111/jipb.70110 · Cited by 10
Engineering Conditional Transgene Expression in Nicotiana benthamiana
Garcia‐Perez, E., Vázquez‐Vilar, M., & Orzáez, D. (2025) · Plant Biotechnology Journal · doi:10.1111/pbi.70350 · Cited by 10
“However, innovations, such as the use of morphogenic regulator genes (Cody et al. 2017; Gordon-Kamm et al. 2019) and transformation of embryonic axes or meristems (Ganguly et al. 2020; Maher et al. 2020), have significantly accelerated this process.”
Alok, A., Raman, V., D’Agostino, L. W., Kshetry, A. O., Mohan, K., Wang, C., Gunapati, S., Stupar, R. M., Patil, G. B., & Zhang, F. (2025) · PLANT PHYSIOLOGY · doi:10.1093/plphys/kiaf640 · Cited by 10
Tackling Lentil Biotic Stresses in the Genomic Era
de la Vega, M. P., Garcı́a, P., Gutierrez-Gonzalez, J. J., & de Miera, L. E. S. (2022) · Springer eBooks · doi:10.1007/978-3-030-91043-3_5 · Cited by 10
Unlocking Nature’s Clock: CRISPR Technology in Flowering Time Engineering
Hodaei, A., & Werbrouck, S. (2023) · Plants · doi:10.3390/plants12234020 · Cited by 10
“Recent advances include improvements in delivery using improved Agrobacterium strains [208,209], viral delivery [210], improvements in regeneration using morphogenic regulators [211,212], and new approaches to use multiplex gene editing to study many genes simultaneously [213,214].”
BackgroundDebernardi, J. M., Tricoli, D. M., Ercoli, M. F., Hayta, Ş., Ronald, P. C., Palatnik, J. F., & Dubcovsky, J. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.08.23.263905 · Cited by 10
Barragán‐Borrero, V., Lopes, A. D. S., Batista, E. D. R., Höfer, M., Elias, R., Chakraborty, A., Ponce-Mañe, A., Descombes, C., Diezma‐Navas, L., Petraki, L., et al. (2026) · New Phytologist · doi:10.1111/nph.70919 · Cited by 9
“…of GRF-GIF chimeric morphogenic regulators, shown to significantly boost transformation, editing, and regeneration efficiencies in plants (Debernardi et al ., 2020; Maher et al ., 2020; Vandeputte et al ., 2024; Swinnen et al ., 2025), could further boost these processes in SP162 and other genotypes.”
Genetic transformation and gene delivery strategies in Carica papaya L.
Tuo, D., Ma, C., Yan, P., Kong, H., Zhou, P., Guo, A., Zhao, H., & Shen, W. (2023) · Tropical Plants · doi:10.48130/tp-2023-0005 · Cited by 9
Bulle, M., Sheri, V., Aileni, M., & Zhang, B. (2023) · Plants · doi:10.3390/plants12193448 · Cited by 10
“…Baby Boom ( BBM ), and Wuschel2 ( WUS2 ), has been shown to improve plant regeneration, thus, resulting in an increase in nuclear transformation efficiency [104–106], but their effect on plastid in vitro regeneration efficiency remains to be demonstrated in recalcitrant species, such as chili pepper.”
Novel Delivery Methods for CRISPR-Based Plant Genome Editing
Prestwich, B. D., Cardi, T., Bakhsh, A., Nicolia, A., & Bhati, K. K. (2023) · Springer eBooks · doi:10.1007/978-3-031-46150-7_3 · Cited by 9
Jin, K., Tian, N., Ferreira, J., Sandhu, D., Xiao, L., Gu, M., Luo, Y., Zhang, X., Liu, G., Liu, Z., et al. (2022) · Biomolecules · doi:10.3390/biom12050688 · Cited by 9
“PMKV060 was donated by Daniel Voytas [36] (Addgene plasmid #133315; (accessed on 16 January 2020) http://n2t.net/addgene:133315; RRID: Addgene_133315).”
MethodReducing costs, improving profits: A low-cost culture media for woody plants micropropagation
Castro-Camba, R., Vielba, J. M., Covelo, P., Vidal, N., & Sánchez, C. (2023) · Journal of Forest Science · doi:10.17221/56/2023-jfs · Cited by 8
Metadata
- Authors
- Maher, M. F., Nasti, R. A., Vollbrecht, M., Starker, C. G., Clark, M. D., & Voytas, D. F.
- Affiliations
- University of Minnesota (US)
- Corresponding author
- Voytas, Daniel F.
- ORCID
- Venue
- Nature Biotechnology
- Published
- 2019-12-16
- Volume
- 38
- Issue
- 1
- Pages
- 84-89
- ISSN
- 0733-222X (ISSN-L)
- 1087-0156
- 1546-1696
- PMC
- PMC6954279
- OpenAlex
- W2995711654
- Cited by
- 541
- References
- 27
- Citations by year
- 2026: 64 · 2025: 86 · 2024: 68 · 2023: 78 · 2022: 94 · 2021: 93 · 2020: 55 · 2019: 2
- FWCI
- 20.08
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Nature Biotechnology (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (T32-GM008347)
- Hackett Fund of the University of Minnesota TechAccel
- TechAccel
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › CRISPR and Genetic Engineering
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant tissue culture and regeneration
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Molecular Biology Research
- Keywords
- Cas9, single guide RNA, somatic cells, dicotyledonous plants, transgenerational inheritance, developmental regulators, epigenome, genome editing
- MeSH terms
- Gene Editing, CRISPR-Associated Protein 9, Base Sequence, Mutation, Plant Proteins, Soil, Nicotiana, Meristem, Plant Shoots, Transgenes, Plants, Genetically Modified, Seedlings
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