Cited by 18Clusterin in disease pathologyHeat shock proteins researchProtein Structure and Dynamics

The DOI matches its Crossref record; 7 of the 7 references it cites were found in a registry or an index.

Structural analyses define the molecular basis of clusterin chaperone function

Open access
Yuste-Checa, Patricia, Carvajal, Alonso I., Mi, Chenchen, Paatz, Sarah, Hartl, F. Ulrich, Bracher, Andreas·2025·Nature Structural & Molecular Biology

Published version of a preprint

Abstract

Clusterin (apolipoprotein J), a conserved glycoprotein abundant in blood and cerebrospinal fluid, functions as a molecular chaperone and apolipoprotein. Dysregulation of clusterin is linked to late-onset Alzheimer disease. Despite its prominent role in extracellular proteostasis, the mechanism of clusterin function remained unclear. Here, we present crystal structures of human clusterin, revealing a discontinuous three-domain architecture. Structure-based mutational analysis demonstrated that two disordered, hydrophobic peptide tails enable diverse activities. Resembling the substrate-binding regions of small heat-shock proteins, these sequences mediate clusterin’s chaperone function in suppressing amyloid-β, tau and α-synuclein aggregation. In conjunction with conserved surface areas, the tail segments also participate in clusterin binding to cell surface receptors and cellular uptake. While contributing to lipoprotein formation, the hydrophobic tails remain accessible for chaperone function in the lipoprotein complex. The remarkable versatility of these sequences allows clusterin to function alone or bound to lipids in maintaining the solubility of aberrant extracellular proteins and facilitating their clearance by endocytosis and lysosomal degradation.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1038/s41594-025-01631-4

Cites

7 of 7 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 83

  1. Wilson, M. R., Satapathy, S. & Vendruscolo, M. Extracellular protein homeostasis in neurodegenerative diseases. Nat. Rev. Neurol. 19, 235–245 (2023).
  2. Wyatt, A. R., Yerbury, J. J., Ecroyd, H. & Wilson, M. R. Extracellular chaperones and proteostasis. Annu. Rev. Biochem. 82, 295–322 (2013). · DOI
  3. Rohne, P., Prochnow, H. & Koch-Brandt, C. The CLU-files: disentanglement of a mystery. Biomol. Concepts 7, 1–15 (2016). · DOI
  4. Satapathy, S. & Wilson, M. R. The dual roles of clusterin in extracellular and intracellular proteostasis. Trends Biochem. Sci. 46, 652–660 (2021). · DOI
  5. Wilson, M. R. & Zoubeidi, A. Clusterin as a therapeutic target. Expert Opin. Ther. Targets 21, 201–213 (2017). · DOI
  6. Blaschuk, O., Burdzy, K. & Fritz, I. B. Purification and characterization of a cell-aggregating factor (clusterin), the major glycoprotein in ram rete testis fluid. J. Biol. Chem. 258, 7714–7720 (1983). · DOI
  7. Fritz, I. B., Burdzy, K., Setchell, B. & Blaschuk, O. Ram rete testis fluid contains a protein (clusterin) which influences cell–cell interactions in vitro. Biol. Reprod. 28, 1173–1188 (1983). · DOI
  8. Jenne, D. E. & Tschopp, J. Molecular structure and functional characterization of a human complement cytolysis inhibitor found in blood and seminal plasma: identity to sulfated glycoprotein 2, a constituent of rat testis fluid. Proc. Natl Acad. Sci. USA 86, 7123–7127 (1989). · DOI
  9. Menny, A. et al. Structural basis of soluble membrane attack complex packaging for clearance. Nat. Commun. 12, 6086 (2021). · DOI
  10. de Silva, H. V. et al. A 70-kDa apolipoprotein designated ApoJ is a marker for subclasses of human plasma high density lipoproteins. J. Biol. Chem. 265, 13240–13247 (1990). · DOI
  11. Jenne, D. E. et al. Clusterin (complement lysis inhibitor) forms a high density lipoprotein complex with apolipoprotein A-I in human plasma. J. Biol. Chem. 266, 11030–11036 (1991). · DOI
  12. Lu, Y. et al. The functional role of lipoproteins in atherosclerosis: novel directions for diagnosis and targeting therapy. Aging Dis. 13, 491–520 (2022). · DOI
  13. Raulin, A. C., Martens, Y. A. & Bu, G. Lipoproteins in the central nervous system: from biology to pathobiology. Annu. Rev. Biochem. 91, 731–759 (2022). · DOI · Paper page
  14. Suzuki, T. et al. Predominant apolipoprotein J exists as lipid-poor mixtures in cerebrospinal fluid. Ann. Clin. Lab. Sci. 32, 369–376 (2002).
  15. Humphreys, D. T., Carver, J. A., Easterbrook-Smith, S. B. & Wilson, M. R. Clusterin has chaperone-like activity similar to that of small heat shock proteins. J. Biol. Chem. 274, 6875–6881 (1999). · DOI
  16. Hammad, S. M., Ranganathan, S., Loukinova, E., Twal, W. O. & Argraves, W. S. Interaction of apolipoprotein J–amyloid β-peptide complex with low density lipoprotein receptor-related protein-2/megalin. A mechanism to prevent pathological accumulation of amyloid β-peptide. J. Biol. Chem. 272, 18644–18649 (1997). · DOI
  17. Kim, Y.-M. et al. Clusterin binding modulates the aggregation and neurotoxicity of amyloid-β(1–42). Mol. Neurobiol. 59, 6228–6244 (2022). · DOI
  18. Narayan, P. et al. The extracellular chaperone clusterin sequesters oligomeric forms of the amyloid-β(1–40) peptide. Nat. Struct. Mol. Biol. 19, 79–83 (2011). · DOI
  19. Scheidt, T. et al. Secondary nucleation and elongation occur at different sites on Alzheimer’s amyloid-β aggregates. Sci. Adv. 5, eaau3112 (2019). · DOI
  20. Yerbury, J. J. et al. The extracellular chaperone clusterin influences amyloid formation and toxicity by interacting with prefibrillar structures. FASEB J. 21, 2312–2322 (2007). · DOI
  21. Wojtas, A. M. et al. Clusterin ameliorates tau pathology in vivo by inhibiting fibril formation. Acta Neuropathol. Commun. 8, 210 (2020). · DOI
  22. Yuste-Checa, P. et al. The extracellular chaperone clusterin enhances tau aggregate seeding in a cellular model. Nat. Commun. 12, 4863 (2021). · DOI
  23. Whiten, D. R. et al. Single-molecule characterization of the interactions between extracellular chaperones and toxic α-synuclein oligomers. Cell Rep. 23, 3492–3500 (2018). · DOI
  24. McHattie, S. & Edington, N. Clusterin prevents aggregation of neuropeptide 106–126 in vitro. Biochem. Biophys. Res. Commun. 259, 336–340 (1999). · DOI
  25. Xu, F., Karnaukhova, E. & Vostal, J. G. Human cellular prion protein interacts directly with clusterin protein. Biochim. Biophys. Acta 1782, 615–620 (2008). · DOI
  26. Itakura, E., Chiba, M., Murata, T. & Matsuura, A. Heparan sulfate is a clearance receptor for aberrant extracellular proteins. J. Cell Biol. 219, e201911126 (2020). · DOI
  27. Wyatt, A. R. et al. Clusterin facilitates in vivo clearance of extracellular misfolded proteins. Cell. Mol. Life Sci. 68, 3919–3931 (2011). · DOI · Paper page
  28. Lambert, J. C. et al. Genome-wide association study identifies variants at CLU and CR1 associated with Alzheimer’s disease. Nat. Genet. 41, 1094–1099 (2009). · DOI · Paper page
  29. Choi-Miura, N. H., Takahashi, Y., Nakano, Y., Tobe, T. & Tomita, M. Identification of the disulfide bonds in human plasma protein SP-40,40 (apolipoprotein-J). J. Biochem. 112, 557–561 (1992). · DOI
  30. Chang, V. T. et al. Glycoprotein structural genomics: solving the glycosylation problem. Structure 15, 267–273 (2007). · DOI
  31. Liu, J., Tan, H. & Rost, B. Loopy proteins appear conserved in evolution. J. Mol. Biol. 322, 53–64 (2002). · DOI
  32. Jaya, N., Garcia, V. & Vierling, E. Substrate binding site flexibility of the small heat shock protein molecular chaperones. Proc. Natl Acad. Sci. USA 106, 15604–15609 (2009). · DOI
  33. Kriehuber, T. et al. Independent evolution of the core domain and its flanking sequences in small heat shock proteins. FASEB J. 24, 3633–3642 (2010). · DOI
  34. Woods, C. N., Ulmer, L. D., Guttman, M., Bush, M. F. & Klevit, R. E. Disordered region encodes α-crystallin chaperone activity toward lens client γD-crystallin. Proc. Natl Acad. Sci. USA 120, e2213765120 (2023). · DOI
  35. Beeg, M. et al. Clusterin binds to Aβ1–42 oligomers with high affinity and interferes with peptide aggregation by inhibiting primary and secondary nucleation. J. Biol. Chem. 291, 6958–6966 (2016). · DOI
  36. Arosio, P., Knowles, T. P. & Linse, S. On the lag phase in amyloid fibril formation. Phys. Chem. Chem. Phys. 17, 7606–7618 (2015). · DOI
  37. Spatharas, P. M. et al. Clusterin in Alzheimer’s disease: an amyloidogenic inhibitor of amyloid formation? Biochim. Biophys. Acta, Mol. Basis Dis. 1868, 166384 (2022). · DOI
  38. Leeb, C., Eresheim, C. & Nimpf, J. Clusterin is a ligand for apolipoprotein E receptor 2 (ApoER2) and very low density lipoprotein receptor (VLDLR) and signals via the Reelin-signaling pathway. J. Biol. Chem. 289, 4161–4172 (2014). · DOI · Paper page
  39. Mahon, M. G., Lindstedt, K. A., Hermann, M., Nimpf, J. & Schneider, W. J. Multiple involvement of clusterin in chicken ovarian follicle development. Binding to two oocyte-specific members of the low density lipoprotein receptor gene family. J. Biol. Chem. 274, 4036–4044 (1999). · DOI
  40. Rudenko, G. et al. Structure of the LDL receptor extracellular domain at endosomal pH. Science 298, 2353–2358 (2002). · DOI · Paper page
  41. Kounnas, M. Z. et al. Identification of glycoprotein 330 as an endocytic receptor for apolipoprotein J/clusterin. J. Biol. Chem. 270, 13070–13075 (1995). · DOI
  42. Andersen, O. M., Benhayon, D., Curran, T. & Willnow, T. E. Differential binding of ligands to the apolipoprotein E receptor 2. Biochemistry 42, 9355–9364 (2003). · DOI · Paper page
  43. Clark, L. E. et al. VLDLR and ApoER2 are receptors for multiple alphaviruses. Nature 602, 475–480 (2022). · DOI
  44. Fernandez-de-Retana, S. et al. Characterization of ApoJ-reconstituted high-density lipoprotein (rHDL) nanodisc for the potential treatment of cerebral β-amyloidosis. Sci. Rep. 7, 14637 (2017). · DOI
  45. Bibow, S. et al. Solution structure of discoidal high-density lipoprotein particles with a shortened apolipoprotein A-I. Nat. Struct. Mol. Biol. 24, 187–193 (2017). · DOI
  46. Henry, N. et al. Lipidated apolipoprotein E4 structure and its receptor binding mechanism determined by a combined cross-linking coupled to mass spectrometry and molecular dynamics approach. PLoS Comput. Biol. 14, e1006165 (2018). · DOI · Paper page
  47. Mamun, M. et al. Decoding Clu (clusterin): conquering cancer treatment resistance and immunological barriers. Int. Immunopharmacol. 137, 112355 (2024). · DOI
  48. Walsh, D. M. et al. A facile method for expression and purification of the Alzheimer’s disease-associated amyloid β-peptide. FEBS J. 276, 1266–1281 (2009). · DOI
  49. Büssow, K. et al. Structural genomics of human proteins—target selection and generation of a public catalogue of expression clones. Microb. Cell Fact. 4, 21 (2005). · DOI
  50. Catanzariti, A. M., Soboleva, T. A., Jans, D. A., Board, P. G. & Baker, R. T. An efficient system for high-level expression and easy purification of authentic recombinant proteins. Protein Sci. 13, 1331–1339 (2004). · DOI
  51. Yuste-Checa, P. & Hartl, F. U. Gibson assembly. protocols.io https://doi.org/10.17504/protocols.io.ewov1de6yvr2/v1 (2025). · DOI
  52. Durocher, Y., Perret, S. & Kamen, A. High-level and high-throughput recombinant protein production by transient transfection of suspension-growing human 293-EBNA1 cells. Nucleic Acids Res. 30, E9 (2002). · DOI
  53. Li, Z., Michael, I. P., Zhou, D., Nagy, A. & Rini, J. M. Simple piggyBac transposon-based mammalian cell expression system for inducible protein production. Proc. Natl Acad. Sci. USA 110, 5004–5009 (2013). · DOI
  54. Yuste-Checa, P. & Hartl, F. U. Induced pluripotent stem cells (iPSCs) differentiation into iNeurons. protocols.io https://doi.org/10.17504/protocols.io.eq2lyxz3wgx9/v1 (2025). · DOI
  55. Yuste-Checa, P. Clusterin purification from HEK293E cells. protocols.io https://doi.org/10.17504/protocols.io.bvvkn64w (2021). · DOI
  56. Bracher, A., Yuste-Checa, P. & Hartl, F. U. Very low-density lipoprotein receptor (VLDLR)–C-tag purification from HEK293E cells. protocols.io https://doi.org/10.17504/protocols.io.j8nlkoqw1v5r/v1 (2024). · DOI
  57. Bracher, A. & Hartl, F. U. GFP–Clu-tails purification from Escherichia coli cells. protocols.io https://doi.org/10.17504/protocols.io.n2bvj3w55lk5/v1 (2025). · DOI
  58. Linse, S. Expression and purification of intrinsically disordered Aβ peptide and setup of reproducible aggregation kinetics experiment. Methods Mol. Biol. 2141, 731–754 (2020). · DOI
  59. Yuste-Checa, P., Wischnewski, N. & Hartl, F. U. Purification of recombinant amyloid β peptide (M1–42) from Escherichia coli. protocols.io https://doi.org/10.17504/protocols.io.3byl4z2k2vo5/v1 (2025). · DOI
  60. Bracher, A., Yuste-Checa, P., Basquin, J., Conti, E. & Hartl, F. U. Crystallization of clusterin mutant TL1 (human Clu-Δ(214–238)). protocols.io https://doi.org/10.17504/protocols.io.bp2l68kndgqe/v1 (2025). · DOI
  61. Kabsch, W.XDS. Acta Crystallogr. D Biol. Crystallogr. 66, 125–132 (2010). · DOI · Paper page
  62. Evans, P. Scaling and assessment of data quality. Acta Crystallogr. D Biol. Crystallogr. 62, 72–82 (2006). · DOI
  63. Evans, P. R. & Murshudov, G. N. How good are my data and what is the resolution? Acta Crystallogr. D Biol. Crystallogr. 69, 1204–1214 (2013). · DOI
  64. French, G. & Wilson, K. On the treatment of negative intensity observations. Acta Crystallogr. A 34, 517–525 (1978). · DOI
  65. Potterton, E., Briggs, P., Turkenburg, M. & Dodson, E. A graphical user interface to the CCP4 program suite. Acta Crystallogr. D Biol. Crystallogr. 59, 1131–1137 (2003). · DOI
  66. Vagin, A. A. & Isupov, M. N. Spherically averaged phased translation function and its application to the search for molecules and fragments in electron-density maps. Acta Crystallogr. D Biol. Crystallogr. 57, 1451–1456 (2001). · DOI
  67. Varadi, M. et al. AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models. Nucleic Acids Res. 50, D439–D444 (2022). · DOI · Paper page
  68. Emsley, P. & Cowtan, K. Coot: model-building tools for molecular graphics. Acta Crystallogr. D Biol. Crystallogr. 60, 2126–2132 (2004). · DOI · Paper page
  69. Murshudov, G. N. et al. REFMAC5 for the refinement of macromolecular crystal structures. Acta Crystallogr. D Biol. Crystallogr. 67, 355–367 (2011). · DOI
  70. Liebschner, D. et al. Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in PHENIX. Acta Crystallogr. D Struct. Biol. 75, 861–877 (2019). · DOI · Paper page
  71. Kleywegt, G. T. & Jones, T. A. A super position. CCP4/ESF-EACBM Newsletter on Protein Crystallography 31, 9–14 (1994).
  72. Gouet, P., Courcelle, E., Stuart, D. I. & Metoz, F. ESPript: multiple sequence alignments in PostScript. Bioinformatics 15, 305–308 (1999). · DOI
  73. Ashkenazy, H. et al. ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules. Nucleic Acids Res. 44, W344–W350 (2016). · DOI · Paper page
  74. Yuste-Checa, P., Bracher, A. & Hartl, F. U. Prevention of rhodanese aggregation assay. protocols.io https://doi.org/10.17504/protocols.io.j8nlkdbrxg5r/v1 (2025). · DOI
  75. Yuste-Checa, P. & Hartl, F. U. Amyloid β (M1–42) aggregation monitored by thioflavin-T (ThT) fluorescence in a plate reader. protocols.io https://doi.org/10.17504/protocols.io.bp2l68ky5gqe/v1 (2025). · DOI
  76. Yuste-Checa, P. & Hartl, F. U. N-terminal protein labeling. protocols.io https://doi.org/10.17504/protocols.io.rm7vzxpbrgx1/v1 (2024). · DOI
  77. Yuste-Checa, P. & Hartl, F. U. Clusterin cellular uptake assay. protocols.io https://doi.org/10.17504/protocols.io.14egn3k2yl5d/v1 (2024). · DOI
  78. Bracher, A., Yuste-Checa, P. & Hartl, F. U. Clusterin–VLDLR-ed binding assay. protocols.io https://doi.org/10.17504/protocols.io.4r3l26m2qv1y/v1 (2025). · DOI
  79. Yuste-Checa, P., Bracher, A. & Hartl, F. U. Solid phase binding assay—clusterin binding to very low-density lipoprotein receptor (VLDLR). protocols.io https://doi.org/10.17504/protocols.io.yxmvm36kol3p/v1 (2024). · DOI
  80. Yuste-Checa, P., Bracher, A. & Hartl, F. U. Formation and isolation of Clu phospholipid particles. protocols.io https://doi.org/10.17504/protocols.io.bp2l6x59zlqe/v1 (2024). · DOI
  81. Yuste-Checa, P., Mi, C. & Hartl, F. U. Preparation of negative stain transmission electron microscopy grids. protocols.io https://doi.org/10.17504/protocols.io.4r3l29x1jv1y/v1 (2025). · DOI
  82. Bracher, A. & Schneider, S. Munich crystallography BAG [dataset, proposal MX-2377, beamline ID23-1, session date 2021-12-02]. European Synchrotron Radiation Facility https://doi.org/10.15151/ESRF-ES-541098252 (2024). · DOI
  83. Fisher, C., Beglova, N. & Blacklow, S. C. Structure of an LDLR–RAP complex reveals a general mode for ligand recognition by lipoprotein receptors. Mol. Cell 22, 277–283 (2006). · DOI · Paper page

Metadata

Authors
Yuste-Checa, P., Carvajal, A. I., Mi, C., Paatz, S., Hartl, F. U., & Bracher, A.
Affiliations
  • Max Planck Institute of Biochemistry (DE)
  • Munich Cluster for Systems Neurology (DE)
Corresponding author
  • Hartl, F. Ulrich
  • Bracher, Andreas
Venue
Nature Structural & Molecular Biology
Published
2025-08-08
Volume
32
Issue
10
Pages
2035-2045
ISSN
  • 1545-9985 (ISSN-L)
  • 1545-9993
OpenAlex
W4413055983
Cited by
18
References
7
Citations by year
2026: 18
FWCI
7.45
Type
journal article
Language
en
Open access
Locations
  • Nature Structural & Molecular Biology (publishedVersion, cc-by)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
  • Europe PMC (PubMed Central) (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • Open access LMU (Ludwid Maxmilian's Universitat Munchen) (submittedVersion, cc-by)
Funders
  • Max-Planck-Förderstiftung
  • Deutsche Forschungsgemeinschaft (EXC 2145, EXC 2145SyNergy, 390857198)
  • European Synchrotron Radiation Facility (ID23‐1)
  • Max-Planck-Gesellschaft
  • Max-Planck-Institut für Bildungsforschung
Topics
  • Health Sciences › Medicine › Oncology › Clusterin in disease pathology
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Heat shock proteins research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
Keywords
clusterin, molecular chaperones, protein aggregation inhibition, amyloid-beta, tau protein, alpha-synuclein, intrinsically disordered regions, crystal structure, Alzheimer's disease, endocytosis, lysosomal degradation, cell surface receptor binding
MeSH terms
Protein Domains, Amino Acid Sequence, Humans, Models, Molecular, Protein Binding, Amyloid beta-Peptides, Crystallography, X-Ray, Molecular Chaperones, Clusterin, alpha-Synuclein

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review