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A tale of three next generation sequencing platforms: comparison of Ion torrent, pacific biosciences and illumina MiSeq sequencers

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Microbiome diversity and dysbiosis in aquaculture

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Microbiota comparison of Pacific white shrimp intestine and sediment at freshwater and marine cultured environment

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Healthy microbiome: a key to successful and sustainable shrimp aquaculture

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Acute hepatopancreatic necrosis disease in penaeid shrimp

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White spot syndrome virus (WSSV) infection impacts intestinal microbiota composition and function in Litopenaeus vannamei

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Aquaculture industry prospective from gut microbiome of fish and shellfish: An overview

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A meta-analysis reveals the environmental and host factors shaping the structure and function of the shrimp microbiota

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Exploring the interactions between the gut microbiome and the shifting surrounding aquatic environment in fisheries and aquaculture: A review

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Microbiome analysis of Pacific white shrimp gut and rearing water from Malaysia and Vietnam: implications for aquaculture research and management

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Progress in the gut microbiota in exploring shrimp disease pathogenesis and incidence

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Dietary prebiotic inulin benefits on growth performance, antioxidant capacity, immune response and intestinal microbiota in Pacific white shrimp (Litopenaeus vannamei) at low salinity

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Metagenomic analysis of composition, function and cycling processes of microbial community in water, sediment and effluent of Litopenaeus vannamei farming environments under different culture modes

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Host-microbiome interaction in fish and shellfish: An overview

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Shrimp disease progression increases the gut bacterial network complexity and abundances of keystone taxa

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Microbial community characterization of shrimp survivors to AHPND challenge test treated with an effective shrimp probiotic (Vibrio diabolicus)

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Doing More with Less: A Comparison of 16S Hypervariable Regions in Search of Defining the Shrimp Microbiota

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Toxic effect of chronic waterborne copper exposure on growth, immunity, anti-oxidative capacity and gut microbiota of Pacific white shrimp Litopenaeus vannamei

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Intestinal bacterial signatures of the “cotton shrimp-like” disease explain the change of growth performance and immune responses in Pacific white shrimp (Litopenaeus vannamei)

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Metagenomics in bioflocs and their effects on gut microbiome and immune responses in Pacific white shrimp

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Exploring the Impact of the Biofloc Rearing System and an Oral WSSV Challenge on the Intestinal Bacteriome of Litopenaeus vannamei

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Disease outbreak accompanies the dispersive structure of shrimp gut bacterial community with a simple core microbiota

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Vibrio pathogens and their toxins in aquaculture: A comprehensive review

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Gastrointestinal microbiota imbalance is triggered by the enrichment of Vibrio in subadult Litopenaeus vannamei with acute hepatopancreatic necrosis disease

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Effects of Bacillus aryabhattai TBRC8450 on vibriosis resistance and immune enhancement in Pacific white shrimp, Litopenaeus vannamei

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Temporal dynamics of bacterial communities in the water and sediments of sea cucumber (Apostichopus japonicus) culture ponds

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Replacement of fishmeal by fermented soybean meal could enhance the growth performance but not significantly influence the intestinal microbiota of white shrimp Litopenaeus vannamei

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Lactic Acid Bacteria in Shellfish: Possibilities and Challenges

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Impact of Aquaculture Practices on Intestinal Bacterial Profiles of Pacific Whiteleg Shrimp Litopenaeus vannamei

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Vibrio parahaemolyticus alters the community composition and function of intestinal microbiota in Pacific white shrimp, Penaeus vannamei

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OTUs and ASVs Produce Comparable Taxonomic and Diversity from Shrimp Microbiota 16S Profiles Using Tailored Abundance Filters

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Analysis of microbiota in the stomach and midgut of two penaeid shrimps during probiotic feeding

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Spatiotemporal successions of shrimp gut microbial colonization: high consistency despite distinct species pool

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A meta-analysis reveals universal gut bacterial signatures for diagnosing the incidence of shrimp disease

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Bacterial analysis in the early developmental stages of the black tiger shrimp (Penaeus monodon)

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Toxic effect of chronic nitrite exposure on growth and health in Pacific white shrimp Litopenaeus vannamei

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Quantitative prediction of shrimp disease incidence via the profiles of gut eukaryotic microbiota

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Bacterial concentration and diversity in fresh tropical shrimps (Penaeus notialis) and the surrounding brackish waters and sediment

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Association between the body weight of growing pigs and the functional capacity of their gut microbiota

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Probiotics: Comprehensive Exploration of the Growth Promotion Mechanisms in Shrimps

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A review of shrimp aquaculture and factors affecting the gut microbiome

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Updated roles of the gut microbiota in exploring shrimp etiology, polymicrobial pathogens, and disease incidence

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Antibiotic-resistant bacteria and gut microbiome communities associated with wild-caught shrimp from the United States versus imported farm-raised retail shrimp

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The emerging pathogen Enterocytozoon hepatopenaei drives a degenerative cyclic pattern in the hepatopancreas microbiome of the shrimp (Penaeus vannamei)

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Improvement of aquaculture water quality by mixed Bacillus and its effects on microbial community structure

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The Effect of Disease and Season to Hepatopancreas and Intestinal Mycobiota of Litopenaeus vannamei

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Taxonomic and functional changes in the microbiota of the white shrimp (Litopenaeus vannamei) associated with postlarval ontogenetic development

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Quantifying the importance of external and internal sources to the gut microbiota in juvenile and adult shrimp

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Dysbiosis of the shrimp ( Penaeus monodon ) gut microbiome with AHPND outbreaks revealed by 16S rRNA metagenomics analysis

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Analysis of bacterial community functional diversity in late-stage shrimp (Litopenaeus vannamei) ponds using Biolog EcoPlates and PICRUSt2

Zhao, Q., Xie, F., Zhang, F., Zhou, K., Sun, H., Zhao, Y., & Yang, Q. (2021) · Aquaculture · doi:10.1016/j.aquaculture.2021.737288 · Cited by 42

Community structure of bacterioplankton and its relationship with environmental factors in the upper reaches of the Heihe River in Qinghai Plateau

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A Review: Microbes and Their Effect on Growth Performance of Litopenaeus vannamei (White Leg Shrimps) during Culture in Biofloc Technology System

Raza, B., Zheng, Z., Zhu, J., & Yang, W. T. (2024) · Microorganisms · doi:10.3390/microorganisms12051013 · Cited by 40

Association of the microbiota dysbiosis in the hepatopancreas of farmed crayfish (Procambarus clarkii) with disease outbreaks

Wu, Z., Zhang, Q., Zhang, T., Chen, J., Wang, S., Hao, J., Lin, Y., & Li, A. (2021) · Aquaculture · doi:10.1016/j.aquaculture.2021.736492 · Cited by 40

Contrasting patterns of bacterial communities in the rearing water and gut of Penaeus vannamei in response to exogenous glucose addition

Huang, L., Guo, H., Liu, Z., Chen, C., Wang, K., Huang, X., Chen, W., Zhu, Y., Yan, M., & Zhang, D. (2022) · Marine Life Science & Technology · doi:10.1007/s42995-021-00124-9 · Cited by 40

Transcriptome analyses reveal Litopenaeus vannamei hemocytes response to lipopolysaccharide

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Longitudinal variations in the gastrointestinal microbiome of the white shrimp, Litopenaeus vannamei

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Microbiome of Penaeus vannamei Larvae and Potential Biomarkers Associated With High and Low Survival in Shrimp Hatchery Tanks Affected by Acute Hepatopancreatic Necrosis Disease

Reyes, G., Betancourt, I., Andrade, B., Panchana, F., Román, R., Ochoa, L. S., Trujillo, L. E., & Bayot, B. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.838640 · Cited by 38

Intestinal microbiota in white spot syndrome virus infected red swamp crayfish (Procambarus clarkii) at different health statuses

Chen, H., Wang, Y., Zhang, J., & Bao, J. (2021) · Aquaculture · doi:10.1016/j.aquaculture.2021.736826 · Cited by 35

Gut microbiota of Pacific white shrimp ( Litopenaeus vannamei ) exhibits distinct responses to pathogenic and non-pathogenic Vibrio parahaemolyticus

Chang, Y.-T., Ko, H.-T., Wu, P.-L., Kumar, R., Wang, H., & Lu, H. (2023) · Microbiology Spectrum · doi:10.1128/spectrum.01180-23 · Cited by 38

Metagenomic comparison of structure and function of microbial community between water, effluent and shrimp intestine of higher place Litopenaeus vannamei ponds

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Complete replacement of fishmeal by soybean and poultry meals in Pacific whiteleg shrimp feeds: Growth and tolerance to EMS/AHPND and WSSV challenge

McLean, E., Barrows, F. T., Craig, S. R., Alfrey, K. B., & Tran, L. (2020) · Aquaculture · doi:10.1016/j.aquaculture.2020.735383 · Cited by 34

White spot syndrome virus (WSSV) disturbs the intestinal microbiota of shrimp (Penaeus vannamei) reared in biofloc and clear seawater

Valente, C. D. S., Rodiles, A., Marques, M. R. F., & Merrifield, D. L. (2020) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-020-10816-4 · Cited by 34

Effects of dietary hydrolyzable tannins on growth performance, antioxidant capacity, intestinal microflora and resistance against Vibrio parahaemolyticus of juvenile Pacific white shrimp, Litopenaeus vannamei (Boone, 1931)

Zhu, X.-F., Guo, H., Li, G., & Zhu, C. (2021) · Aquaculture Reports · doi:10.1016/j.aqrep.2021.100601 · Cited by 33

The intestine microbiota of shrimp and its impact on cultivation

Zeng, S., He, J., & Huang, Z. (2024) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-024-13213-3 · Cited by 33

Assessing the intestinal bacterial community of farmed Nile tilapia (Oreochromis niloticus) by high-throughput absolute abundance quantification

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Shrimp microbiome and immune development in the early life stages

Angthong, P., Chaiyapechara, S., & Rungrassamee, W. (2023) · Developmental & Comparative Immunology · doi:10.1016/j.dci.2023.104765 · Cited by 33

Microbiome differences between river-dwelling and cave-adapted populations of the fish Astyanax mexicanus (De Filippi, 1853)

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Effects of long-term starvation on health indices, gut microbiota and innate immune response of fresh water crayfish, marron (Cherax cainii, Austin 2002)

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A gelatinized lipopeptide diet effectively modulates immune response, disease resistance and gut microbiome in Penaeus vannamei challenged with Vibrio parahaemolyticus

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Microbiome analysis of Litopenaeus vannamei reveals Vibrio as main risk factor of white faeces syndrome

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