Biomarkers for oralization during long-term proton pump inhibitor therapy predict survival in cirrhosis
Open accessAbstract
Proton pump inhibitors (PPI) are an invaluable therapy option for acid related diseases; however, PPI therapy is also linked to a series of side effects in cirrhosis, such as microbiome alterations, spontaneous bacterial peritonitis and hepatic encephalopathy. Decision tools to balance benefits and risks of PPI therapy are largely missing. In this study, we tested gut-derived biomarkers to identify PPI-associated dysbiosis, its association with gut barrier function and liver-related mortality. In this observational study, faecal microbiome composition data obtained from 16S rDNA sequencing of 90 cirrhotic patients with and without long-term PPI use and additional potential biomarkers identified from the literature were evaluated for their predictive value regarding PPI-associated dysbiosis and liver-related three-year mortality. In addition, faecal calprotectin, faecal zonulin and serum lipopolysaccharides were assessed as markers for intestinal inflammation, gut permeability and bacterial translocation. Streptococcus salivarius, Veillonella parvula and the genus Streptococcus were significantly increased in patients with long-term PPI therapy and performed well as biomarkers for PPI-associated dysbiosis (accuracy: 74%, 72% and 74%, respectively). The abundance of Streptococcus salivarius was linked to intestinal inflammation and gut barrier dysfunction, whereas the abundance of Veillonella parvula showed associations with liver disease severity; both were independent predictors for liver-related three-year mortality. Gut-derived biomarkers of PPI-associated dysbiosis are linked to worse outcome and a potential option to evaluate the risks of adverse events during long-term PPI therapy.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
PPI use is connected to fecal microbiota oralization and worse anti-PD-1 outcomes.
“As previously reported, they also link PPI use with fecal microbiota oralization32 and adverse outcomes in response to anti-PD-1 therapy33.”
From Intestinal microbiota signatures of clinical response and immune-related adverse events in melanoma patients treated with anti-PD-1 (2022) · cites this paper as [32]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
QIIME allows analysis of high-throughput community sequencing data
Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Peña, A. G., Goodrich, J. K., Gordon, J. I., et al. (2010) · Nature Methods · doi:10.1038/nmeth.f.303 · Cited by 34,887 · see citing works
Search and clustering orders of magnitude faster than BLAST
Edgar, R. C. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq461 · Cited by 20,617 · see citing works
UCHIME improves sensitivity and speed of chimera detection
Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C., & Knight, R. (2011) · Bioinformatics · doi:10.1093/bioinformatics/btr381 · Cited by 15,114 · see citing works
Database resources of the National Center for Biotechnology Information: update
Wheeler, D. L. (2003) · Nucleic Acids Research · doi:10.1093/nar/gkh073 · Cited by 10,691 · see citing works
Propensity Score-Matching Methods for Nonexperimental Causal Studies
Dehejia, R., & Wahba, S. (2002) · The Review of Economics and Statistics · doi:10.1162/003465302317331982 · Cited by 4,777 · see citing works
Alterations of the human gut microbiome in liver cirrhosis
Qin, N., Yang, F., Li, A., Prifti, E., Chen, Y., Shao, L., Guo, J., Le Chatelier, E., Yao, J., Wu, L., et al. (2014) · Nature · doi:10.1038/nature13568 · Cited by 2,177 · see citing works
Database resources of the National Center for Biotechnology Information
Coordinators, N. R. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv1290 · Cited by 1,459 · see citing works
Proton pump inhibitors affect the gut microbiome
Imhann, F., Bonder, M. J., Vich Vila, A., Fu, J., Mujagic, Z., Vork, L., Tigchelaar, E. F., Jankipersadsing, S. A., Cenit, M. C., Harmsen, H. J. M., et al. (2016) · Gut · doi:10.1136/gutjnl-2015-310376 · Cited by 1,371 · see citing works
Altered profile of human gut microbiome is associated with cirrhosis and its complications
Bajaj, J. S., Heuman, D. M., Hylemon, P. B., Sanyal, A. J., White, M. B., Monteith, P., Noble, N. A., Unser, A. B., Daita, K., Fisher, A. R., et al. (2014) · Journal of Hepatology · doi:10.1016/j.jhep.2013.12.019 · Cited by 1,099 · see citing works
Interleukin‐8, a chemotactic and inflammatory cytokine
Baggiolini, M., & Clark‐Lewis, I. (1992) · FEBS Letters · doi:10.1016/0014-5793(92)80909-z · Cited by 991 · see citing works
Proton pump inhibitors alter the composition of the gut microbiota
Jackson, M. A., Goodrich, J. K., Maxan, M.-E., Freedberg, D. E., Abrams, J. A., Poole, A. C., Sutter, J. L., Welter, D., Ley, R. E., Bell, J. T., et al. (2016) · Gut · doi:10.1136/gutjnl-2015-310861 · Cited by 895 · see citing works
Self-citationCalypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions
Zakrzewski, M., Proietti, C., Ellis, J. J., Hasan, S., Brion, M., Berger, B. W., & Krause, L. (2016) · Bioinformatics · doi:10.1093/bioinformatics/btw725 · Cited by 568 · see citing works
Proton Pump Inhibitors Exacerbate NSAID-Induced Small Intestinal Injury by Inducing Dysbiosis
Wallace, J. L., Syer, S., Denou, E., de Palma, G., Vong, L., McKnight, W., Jury, J., Bolla, M., Bercik, P., Collins, S. M., et al. (2011) · Gastroenterology · doi:10.1053/j.gastro.2011.06.075 · Cited by 460 · see citing works
Freedberg, D. E., Toussaint, N. C., Chen, S. P., Ratner, A. J., Whittier, S., Wang, T. C., Wang, H. H., & Abrams, J. A. (2015) · Gastroenterology · doi:10.1053/j.gastro.2015.06.043 · Cited by 322 · see citing works
Self-citationChen, P., Stärkel, P., Turner, J. R., Ho, S. B., & Schnabl, B. (2015) · Hepatology · doi:10.1002/hep.27489 · Cited by 312 · see citing works
Cosseau, C., Devine, D. A., Dullaghan, E., Gardy, J. L., Chikatamarla, A., Gellatly, S., Yu, L. L., Pistolic, J., Falsafi, R., Tagg, J., et al. (2008) · Infection and Immunity · doi:10.1128/iai.00188-08 · Cited by 293 · see citing works
Ecology of viridans streptococci in the oral cavity and pharynx
Frandsen, E. V. G., Pedrazzoli, V., & Kilian, M. (1991) · Oral Microbiology and Immunology · doi:10.1111/j.1399-302x.1991.tb00466.x · Cited by 258 · see citing works
Llorente, C., Jepsen, P., Inamine, T., Wang, L., Bluemel, S., Wang, H. J., Loomba, R., Bajaj, J. S., Schubert, M. L., Sikaroodi, M., et al. (2017) · Nature Communications · doi:10.1038/s41467-017-00796-x · Cited by 257 · see citing works
Xie, Y., Bowe, B. C., Li, T., Xian, H., Yan, Y., & Al‐Aly, Z. (2017) · BMJ Open · doi:10.1136/bmjopen-2016-015735 · Cited by 231 · see citing works
Kaci, G., Goudercourt, D., Dennin, V., Pot, B., Dore, J. M., Ehrlich, S. D., Renault, P., Blottière, H. M., Daniel, C., & Delorme, C. (2013) · Applied and Environmental Microbiology · doi:10.1128/aem.03133-13 · Cited by 222 · see citing works
Dam, G., Vilstrup, H., Watson, H., & Jepsen, P. (2016) · Hepatology · doi:10.1002/hep.28737 · Cited by 190 · see citing works
Tsai, C.-F., Chen, M., Wang, Y., Chu, C., Huang, Y., Lin, H., Hou, M., Lee, F., Su, T., & Lu, C. (2016) · Gastroenterology · doi:10.1053/j.gastro.2016.09.007 · Cited by 175 · see citing works
Influence of Proton-Pump Inhibitors on the Luminal Microbiota in the Gastrointestinal Tract
Tsuda, A., Suda, W., Morita, H., Takanashi, K., Takagi, A., Koga, Y., & Hattori, M. (2015) · Clinical and Translational Gastroenterology · doi:10.1038/ctg.2015.20 · Cited by 164 · see citing works
Seto, C. T., Jeraldo, P., Orenstein, R., Chia, N., & DiBaise, J. K. (2014) · Microbiome · doi:10.1186/2049-2618-2-42 · Cited by 163 · see citing works
van den Bogert, B., Meijerink, M., Zoetendal, E. G., Wells, J. M., & Kleerebezem, M. (2014) · PLoS ONE · doi:10.1371/journal.pone.0114277 · Cited by 159 · see citing works
Liquid-phase microextraction and capillary electrophoresis of acidic drugs
Pedersen‐Bjergaard, S., & Rasmussen, K. E. (2000) · Electrophoresis · doi:10.1002/(sici)1522-2683(20000201)21:3 · Cited by 156 · see citing works
Bajaj, J. S., Cox, I. J., Betrapally, N. S., Heuman, D. M., Schubert, M. L., Ratneswaran, M., Hylemon, P. B., White, M. B., Daita, K., Noble, N. A., et al. (2014) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00268.2014 · Cited by 143 · see citing works
O’Leary, J. G., Reddy, K. R., Wong, F. S.-H., Kamath, P. S., Patton, H. M., Biggins, S. W., Fallon, M. B., García–Tsao, G., Subramanian, R., Malik, R., et al. (2014) · Clinical Gastroenterology and Hepatology · doi:10.1016/j.cgh.2014.07.060 · Cited by 132 · see citing works
The influence of oral Veillonella species on biofilms formed by Streptococcus species
Mashima, I., & Nakazawa, F. (2014) · Anaerobe · doi:10.1016/j.anaerobe.2014.05.003 · Cited by 125 · see citing works
Hughes, C. V., Kolenbrander, P. E., Andersen, R. N., & Moore, L. V. H. (1988) · Applied and Environmental Microbiology · doi:10.1128/aem.54.8.1957-1963.1988 · Cited by 121 · see citing works
Bajaj, J. S., Acharya, C., Fagan, A., White, M. B., Gavis, E. A., Heuman, D. M., Hylemon, P. B., Fuchs, M. A., Puri, P., Schubert, M. L., et al. (2018) · The American Journal of Gastroenterology · doi:10.1038/s41395-018-0085-9 · Cited by 120 · see citing works
Horvath, A., Leber, B., Schmerboeck, B., Tawdrous, M., Zettel, G., Hartl, A., Madl, T., Stryeck, S., Fuchs, D., Lemesch, S., et al. (2016) · Alimentary Pharmacology & Therapeutics · doi:10.1111/apt.13788 · Cited by 118 · see citing works
Self-citationDultz, G., Piiper, A., Zeuzem, S., Kronenberger, B., & Waidmann, O. (2014) · Alimentary Pharmacology & Therapeutics · doi:10.1111/apt.13061 · Cited by 116 · see citing works
Min, Y. W., Lim, K. S., Min, B., Gwak, G., Paik, Y., Choi, M. S., Lee, J., Kim, J. J., Koh, K. C., Paik, S. W., et al. (2014) · Alimentary Pharmacology & Therapeutics · doi:10.1111/apt.12875 · Cited by 110 · see citing works
Decompensated cirrhosis and microbiome interpretation
Bajaj, J. S., Betrapally, N. S., & Gillevet, P. M. (2015) · Nature · doi:10.1038/nature14851 · Cited by 100 · see citing works
Merli, M., Lucidi, C., Gregorio, V. D., Giannelli, V., Giusto, M., Ceccarelli, G., Riggio, O., & Venditti, M. (2014) · Liver International · doi:10.1111/liv.12593 · Cited by 95 · see citing works
Stadlbauer, V., Horvath, A., Ribitsch, W., Schmerböck, B., Schilcher, G., Lemesch, S., Stiegler, P., Rosenkranz, A. R., Fickert, P., & Leber, B. (2017) · Scientific Reports · doi:10.1038/s41598-017-15650-9 · Cited by 81 · see citing works
Self-citationReceptor Recognition of and Immune Intracellular Pathways for Veillonella parvula Lipopolysaccharide
Matera, G., Muto, V., Vinci, M., Zicca, E., Abdollahi‐Roodsaz, S., van de Veerdonk, F. L., Kullberg, B. J., Liberto, M. C., van der Meer, J. W. M., Focà, A., et al. (2009) · Clinical and Vaccine Immunology · doi:10.1128/cvi.00310-09 · Cited by 76 · see citing works
Mostefaoui, Y., Bart, C., Frenette, M., et al. (2004) · Cellular Microbiology · doi:10.1111/j.1462-5822.2004.00420.x · Cited by 72 · see citing works
Mandorfer, M., Bota, S. I., Schwabl, P., Bucsics, T., Pfisterer, N., Summereder, C., Hagmann, M., Blacky, A., Ferlitsch, A., Sieghart, W., et al. (2014) · PLoS ONE · doi:10.1371/journal.pone.0110503 · Cited by 65 · see citing works
Use and overuse of proton pump inhibitors in cirrhotic patients.
Chávez-Tapia, N. C., Téllez-Ávila, F. I., García-Leiva, J., & Valdovinos, M. A. (2008) · PubMed · Cited by 60 · see citing works
Sieczkowska, A., Landowski, P., Zagożdżon, P., Kamińska, B., & Lifschitz, C. H. (2015) · The Journal of Pediatrics · doi:10.1016/j.jpeds.2015.01.004 · Cited by 44 · see citing works
Proton pump inhibitor prescription abuse and sepsis in cirrhosis
Picardi, A. (2016) · World Journal of Gastrointestinal Pharmacology and Therapeutics · doi:10.4292/wjgpt.v7.i1.1 · Cited by 9 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
McCulloch, J. A., Davar, D., Rodrigues, R. R., Badger, J. H., Fang, J. R., Cole, A. M., Balaji, A. K., Vetizou, M., Prescott, S. M., Fernandes, M. R., et al. (2022) · Nature Medicine · doi:10.1038/s41591-022-01698-2 · Cited by 472 · see citing works
Dysbiosis, gut barrier dysfunction and inflammation in dementia: a pilot study
Stadlbauer, V., Engertsberger, L., Komarova, I., Feldbacher, N., Leber, B., Pichler, G., Fink, N., Scarpatetti, M., Schippinger, W., Schmidt, R., et al. (2020) · BMC Geriatrics · doi:10.1186/s12877-020-01644-2 · Cited by 182 · see citing works
Self-citation
- Authors
- Horvath, A., Rainer, F., Bashir, M., Leber, B., Schmerboeck, B., Klymiuk, I., Groselj-Strele, A., Durdevic, M., Freedberg, D. E., Abrams, J. A., Fickert, P., Stiegler, P., & Stadlbauer, V.
- Affiliations
- Medical University of Graz (AT)
- Columbia University Irving Medical Center (US)
- Corresponding author
- Horvath, Angela
- ORCID
- Venue
- Scientific Reports
- Published
- 2019-08-19
- Volume
- 9
- Issue
- 1
- Pages
- 12000-12000
- ISSN
- 2045-2322 (ISSN-L)
- PMC
- PMC6700098
- OpenAlex
- W2968783145
- Cited by
- 93
- References
- 44
- Citations by year
- 2026: 10 · 2025: 14 · 2024: 10 · 2023: 16 · 2022: 12 · 2021: 17 · 2020: 13 · 2019: 1
- FWCI
- 3.56
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Scientific Reports (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Austrian Science Fund (P24362)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Medicine › Hepatology › Liver Disease and Transplantation
- Health Sciences › Medicine › Gastroenterology › Gastrointestinal motility and disorders
- Keywords
- proton pump inhibitors, liver cirrhosis, gut dysbiosis, oralization, fecal microbiota, Streptococcus salivarius, Veillonella parvula, Streptococcus, liver-related mortality, intestinal barrier dysfunction, intestinal inflammation, bacterial translocation, fecal calprotectin, serum lipopolysaccharide, hepatic encephalopathy, spontaneous bacterial peritonitis
- MeSH terms
- Gastrointestinal Microbiome, Aged, Feces, Female, Humans, Intestinal Mucosa, Liver Cirrhosis, Male, Middle Aged, Mortality, Prognosis, Biomarkers, Proportional Hazards Models, Treatment Outcome, Proton Pump Inhibitors, Dysbiosis
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review