Decompensated cirrhosis and microbiome interpretation
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Cirrhosis stage correlates positively with Enterobacteriaceae and negatively with Lachnospiraceae.
“These changes seem to develop progressively, as cirrhosis stage is positively correlated with Enterobacteriaceae and negatively correlated with Lachnospiraceae33,34.”
From The gut microbiome and liver cancer: mechanisms and clinical translation (2017) · cites this paper as [34]
The intestinal microbiota of patients with compensated cirrhosis differs from that of patients with decompensated cirrhosis, suggesting cirrhosis stage rather than underlying liver disease drives gut microbiota changes.
“The finding that the intestinal microbiota of patients with compensated cirrhosis differs from that of patients with decompensated cirrhosis34 suggests that cirrhosis stage, rather than the underlying liver disease, drives gut microbiota changes.”
From The gut microbiome and liver cancer: mechanisms and clinical translation (2017) · cites this paper as [34]
Cognitive impairment arising due to hepatic encephalopathy is mediated by microbial disturbances and can be reversed with oral antibiotic treatment.
“For example, it is well established that the cognitive impairment arising due to hepatic encephalopathy is mediated by microbial disturbances and can be reversed with oral antibiotic treatment (414–417).”
From Signalling cognition: The gut microbiota and hypothalamic-pituitary-adrenal axis (2023) · cites this paper as [414]
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Cites
Metagenomic biomarker discovery and explanation
Segata, N., Izard, J., Waldron, L., Gevers, D., Miropolsky, L., Garrett, W. S., & Huttenhower, C. (2011) · Genome Biology · doi:10.1186/gb-2011-12-6-r60 · Cited by 16,192 · see citing works
Changes of Intestinal Functions in Liver Cirrhosis
Fukui, H., & Wiest, R. (2016) · Inflammatory Intestinal Diseases · doi:10.1159/000444436 · Cited by 6,820 · see citing works
Alterations of the human gut microbiome in liver cirrhosis
Qin, N., Yang, F., Li, A., Prifti, E., Chen, Y., Shao, L., Guo, J., Le Chatelier, E., Yao, J., Wu, L., et al. (2014) · Nature · doi:10.1038/nature13568 · Cited by 2,177 · see citing works
Schuppan, D., & Afdhal, N. H. (2008) · The Lancet · doi:10.1016/s0140-6736(08)60383-9 · Cited by 2,089 · see citing works
Altered profile of human gut microbiome is associated with cirrhosis and its complications
Bajaj, J. S., Heuman, D. M., Hylemon, P. B., Sanyal, A. J., White, M. B., Monteith, P., Noble, N. A., Unser, A. B., Daita, K., Fisher, A. R., et al. (2014) · Journal of Hepatology · doi:10.1016/j.jhep.2013.12.019 · Cited by 1,099 · see citing works
Self-citationCharacterization of fecal microbial communities in patients with liver cirrhosis
Chen, Y., Yang, F., Lu, H., Wang, B., Chen, Y., Lei, D., Wang, Y., Zhu, B., & Li, L. (2011) · Hepatology · doi:10.1002/hep.24423 · Cited by 1,038 · see citing works
Linkage of gut microbiome with cognition in hepatic encephalopathy
Bajaj, J. S., Ridlon, J. M., Hylemon, P. B., Thacker, L. R., Heuman, D. M., Smith, S., Sikaroodi, M., & Gillevet, P. M. (2012) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00190.2011 · Cited by 547 · see citing works
Self-citationBajaj, J. S., Hylemon, P. B., Ridlon, J. M., Heuman, D. M., Daita, K., White, M. B., Monteith, P., Noble, N. A., Sikaroodi, M., & Gillevet, P. M. (2012) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00152.2012 · Cited by 525 · see citing works
Self-citationBajaj, J. S., Heuman, D. M., Sanyal, A. J., Hylemon, P. B., Sterling, R. K., Stravitz, R. T., Fuchs, M., Ridlon, J. M., Daita, K., Monteith, P., et al. (2013) · PLoS ONE · doi:10.1371/journal.pone.0060042 · Cited by 430 · see citing works
Large-Scale Survey of Gut Microbiota Associated With MHE Via 16S rRNA-Based Pyrosequencing
Zhang, Z., Zhai, H., Geng, J., Yu, R., Ren, H.-Q., Fan, H., & Shi, P. (2013) · The American Journal of Gastroenterology · doi:10.1038/ajg.2013.221 · Cited by 188 · see citing works
Elkrief, L., Chouinard, P., Bendersky, N., Hajage, D., Larroque, B., Babany, G., Kutala, B. K., Francoz, C., Boyer, N., Moreau, R., et al. (2014) · Hepatology · doi:10.1002/hep.27228 · Cited by 164 · see citing works
Bajaj, J. S., Cox, I. J., Betrapally, N. S., Heuman, D. M., Schubert, M. L., Ratneswaran, M., Hylemon, P. B., White, M. B., Daita, K., Noble, N. A., et al. (2014) · American Journal of Physiology-Gastrointestinal and Liver Physiology · doi:10.1152/ajpgi.00268.2014 · Cited by 143 · see citing works
Self-citationGastric acid reduction leads to an alteration in lower intestinal microflora
Kanno, T., Matsuki, T., Oka, M., Utsunomiya, H., Inada, K., Magari, H., Inoue, I., Maekita, T., Ueda, K., Enomoto, S., et al. (2009) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2009.02.109 · Cited by 113 · see citing works
Quantitative Assessment of the Human Gut Microbiome Using Multitag Pyrosequencing
Gillevet, P. M., Sikaroodi, M., Keshavarzian, A., & Mutlu, E. (2010) · Chemistry & Biodiversity · doi:10.1002/cbdv.200900322 · Cited by 105 · see citing works
Self-citationA longitudinal systems biology analysis of lactulose withdrawal in hepatic encephalopathy
Bajaj, J. S., Gillevet, P. M., Patel, N. R., Ahluwalia, V., Ridlon, J. M., Kettenmann, B., Schubert, C. M., Sikaroodi, M., Heuman, D. M., Crossey, M. M. E., et al. (2012) · Metabolic Brain Disease · doi:10.1007/s11011-012-9303-0 · Cited by 96 · see citing works
Self-citationUse and overuse of proton pump inhibitors in cirrhotic patients.
Chávez-Tapia, N. C., Téllez-Ávila, F. I., García-Leiva, J., & Valdovinos, M. A. (2008) · PubMed · Cited by 60 · see citing works
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Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights
Pasolli, E., Truong, D. T., Malik, F., Waldron, L., & Segata, N. (2016) · PLOS Computational Biology · doi:10.1371/journal.pcbi.1004977 · Cited by 659 · see citing works
The gut microbiome and liver cancer: mechanisms and clinical translation
Yu, L.-X., & Schwabe, R. F. (2017) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/nrgastro.2017.72 · Cited by 634 · see citing works
Signalling cognition: The gut microbiota and hypothalamic-pituitary-adrenal axis
Rusch, J. A., Layden, B. T., & Dugas, L. R. (2023) · Frontiers in Endocrinology · doi:10.3389/fendo.2023.1130689 · Cited by 415 · see citing works
A randomized clinical trial of fecal microbiota transplant for alcohol use disorder
Bajaj, J. S., Gavis, E. A., Fagan, A., Wade, J. B., Thacker, L. R., Fuchs, M., Patel, S., Davis, B., Meador, J., Puri, P., et al. (2021) · Hepatology · doi:10.1002/hep.31496 · Cited by 262 · see citing works
Self-citationAcharya, C., Betrapally, N. S., Gillevet, P. M., Sterling, R. K., Akbarali, H., White, M. B., Ganapathy, D., Fagan, A., Sikaroodi, M., & Bajaj, J. S. (2017) · Alimentary Pharmacology & Therapeutics · doi:10.1111/apt.13858 · Cited by 175 · see citing works
Self-citationSung, C. M., Lin, Y.-F., Chen, K.-F., Ke, H.-M., Huang, H.-Y., Gong, Y.-N., Tsai, W.-S., You, J.-F., Lu, M. J., Cheng, H.-T., et al. (2019) · Cellular and Molecular Gastroenterology and Hepatology · doi:10.1016/j.jcmgh.2019.04.008 · Cited by 127 · see citing works
Horvath, A., Rainer, F., Bashir, M., Leber, B., Schmerboeck, B., Klymiuk, I., Groselj-Strele, A., Durdevic, M., Freedberg, D. E., Abrams, J. A., et al. (2019) · Scientific Reports · doi:10.1038/s41598-019-48352-5 · Cited by 93 · see citing works
HCV eradication does not impact gut dysbiosis or systemic inflammation in cirrhotic patients
Bajaj, J. S., Sterling, R. K., Betrapally, N. S., Nixon, D. E., Fuchs, M., Daita, K., Heuman, D. M., Sikaroodi, M., Hylemon, P. B., White, M. B., et al. (2016) · Alimentary Pharmacology & Therapeutics · doi:10.1111/apt.13732 · Cited by 63 · see citing works
Self-citationThe Human Gut Microbiome in Liver Diseases
Davis, B., & Bajaj, J. (2017) · Seminars in Liver Disease · doi:10.1055/s-0037-1602763 · Cited by 34 · see citing works
Self-citationQin, N., Le Chatelier, E., Guo, J., Prifti, E., Li, L., & Ehrlich, S. D. (2015) · Nature · doi:10.1038/nature14852 · Cited by 3 · see citing works
- Authors
- Bajaj, J. S., Betrapally, N. S., & Gillevet, P. M.
- Affiliations
- Virginia Commonwealth University (US)
- George Mason University (US)
- Corresponding author
- Bajaj, Jasmohan S.
- Venue
- Nature
- Published
- 2015-09-16
- Volume
- 525
- Issue
- 7569
- Pages
- E1-E2
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- PMC
- PMC4617624
- OpenAlex
- W2414212485
- Cited by
- 100
- References
- 16
- Citations by year
- 2025: 5 · 2024: 10 · 2023: 6 · 2022: 8 · 2021: 13 · 2020: 13 · 2019: 16 · 2018: 6 · 2017: 12 · 2016: 9 · 2015: 2
- FWCI
- 5.73
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Nature (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- Funders
- U.S. Department of Veterans Affairs (I01 CX001076)
- National Institute of Diabetes and Digestive and Kidney Diseases (R01DK087913)
- Topics
- Health Sciences › Medicine › Hepatology › Liver Disease and Transplantation
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Medicine › Pathology and Forensic Medicine › Alcohol Consumption and Health Effects
- Keywords
- decompensated cirrhosis, gut microbiota, liver cirrhosis, oral microbiota, proton pump inhibitor therapy, biomarkers, alcoholic liver disease, alcoholism
- MeSH terms
- Humans, Liver Cirrhosis, Gastrointestinal Tract, Metagenomics, Microbiota
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