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Bacteria as Multicellular Organisms
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“Even the interaction with the surrounding environment can be crucial for defining cellular cooperation and the evolution of microbial communities [16,17,18,19,20].”
From Microbiota of Cheese Ecosystems: A Perspective on Cheesemaking (2025) · cites this paper as [20]
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“Shapiro & Dworkin, 1997; Shapiro, 1998; Bassler, 2002; Henke & Bassler, 2004), parasitology (reviewed by West et al., 2001, 2003), and agronomy (reviewed by Denison et al., 2003).”
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“In this literature it is often assumed that cooperation is favoured because it provides a benefit at the population or species leve”
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“, bacterial colonies can exhibit growth patterns which are reminiscent of Diffusion Limited Aggregation clusters [292] and other growth patterns [39,40,107,183,288].”
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BacSim, a simulator for individual-based modelling of bacterial colony growth
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“The existing extensive literature on modelling bacterial colony growth is based on classical mathematical population models (Pirt, 1967; Grimson & Barker, 1994) and cellular automaton models (Ben-Jacob et al., 1994; Shapiro & Dworkin, 1997 ).”
MethodThe cognitive cell: bacterial behavior reconsidered
Lyon, P. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00264 · Cited by 411
“On the other hand, if enteric bacteria are capable of dynamic predictive behavior, rising temperatures should induce respiratory repression.”
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“‘superorganisms’ (Wheeler, 1911; Marais, 1925; Wells et al., 1929; Emerson, 1932; Wynne-Edwards, 1962, 1993; Seeley, 1989, 1997; Wilson & Sober, 1989; Ho¨lldobler & Wilson, 1990, 2009; Shapiro & Dworkin, 1997; Shapiro, 1998; Sober & Wilson, 1998; Reeve & Ho¨lldobler, 2007; Wilson & Wilson, 2007).”
Addiction Modules and Programmed Cell Death and Antideath in Bacterial Cultures
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Programmed Cell Death in Bacterial Populations
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“The products of the asg genes act early in development to sense the appropriate nutritional signals and initiate the formation of fruiting bodies (33).”
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“In a sense, the collective behavior of a bacterial population converts it too into a type of multicellular ‘‘individual’’ (Shapiro and Dworkin 1997).”
BackgroundSpiers, A. J., Kahn, S. G., Bohannon, J., Travisano, M., & Rainey, P. B. (2002) · Genetics · doi:10.1093/genetics/161.1.33 · Cited by 286
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“As such, natural selection has taken advantage of these mechanisms to solve a variety of problems faced by many group-living organisms including bacteria colonies [10,112], gregarious athropods [2,50,73,74], fish schools [28,99] and herding mammals [26,56].”
BackgroundFormation of complex bacterial colonies via self-generated vortices
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Tansley Review No. 107. Heterocyst and akinete differentiation in cyanobacteria
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“Since similar properties are seen in multicellular development, biofilm formation has been viewed by some as a developmental process (Shapiro, 1988, 1998; O’Toole et al., 2000; Bonner, 2001; Kaiser, 2001; Stoodley et al., 2002; Wolpert et al., 2002; Aguilar et al., 2007; Monds and O’Toole, 2009).”
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“In the 1990s, Marty and I organized a couple of meetings at Woods Hole Marine Biological Laboratory on bacterial multicellularity and, in 1997, we published the first book on Bacteria as Multicellular Organisms (Shapiro & Dworkin, 1997).”
BackgroundSelf-citationThe role of quorum sensing in the in vivo virulence of
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“the Myxobacteria and the Actinomycetes, to today’s pervading view that nearly all bacteria are capable of multicellular behaviors [2].”
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“Will the generic models developed here be applicable in such circumstances? It is clear that both pattern formation and morphotype transition require a mode of organized cellular communication and cooperative multicellular behavior (72), demonstrating once again that, under specific conditions, certain microbial popul…”
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Stewart, I., Webb, P. M., Schlüter, P. J., & Shaw, G. R. (2006) · Environmental Health · doi:10.1186/1476-069x-5-6 · Cited by 215
On the evolution of bacterial multicellularity
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Ben‐Jacob, E. (1997) · Contemporary Physics · doi:10.1080/001075197182405 · Cited by 198
“However, bacterial colonies in nature must regularly cope with hostile environmental conditions [5] [11].”
BackgroundThe quantum vacuum and the cosmological constant problem
Rugh, S. E., & Zinkernagel, H. (2002) · Studies in History and Philosophy of Science Part B Studies in History and Philosophy of Modern Physics · doi:10.1016/s1355-2198(02)00033-3 · Cited by 273
Mendelson, N. H., Bourque, A., Wilkening, K., et al. (1999) · Journal of Bacteriology · doi:10.1128/jb.181.2.600-609.1999 · Cited by 196
The significances of bacterial colony patterns
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Self-citationStudies of bacterial branching growth using reaction–diffusion models for colonial development
Golding, I., Kozlovsky, Y., Cohen, I., & Ben-Jacob, E. (1998) · Physica A Statistical Mechanics and its Applications · doi:10.1016/s0378-4371(98)00345-8 · Cited by 190
“During the course of evolution, bacteria have developed sophisticated cooperative behavior and intricate communication capabilities [1–5].”
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Aranson, I. S., Sokolov, A., Kessler, J. O., et al. (2007) · Physical Review E · doi:10.1103/physreve.75.040901 · Cited by 186
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Origins and Early Evolution of Predation
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Size doesn’t matter: towards a more inclusive philosophy of biology
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“Their communal activities range from carrying out coordinated cascades of metabolic processes to the regulation of host-parasite interaction and environmental modification (Dworkin 1997; Shapiro 1998; Hooper et al. 1998; 2001; Kolenbrander 2000; Crespi 2001).”
BackgroundScreening of traditional Chinese medicinal plants for quorum-sensing inhibitors activity
Koh, K. H., & Tham, F. Y. (2011) · Journal of Microbiology Immunology and Infection · doi:10.1016/j.jmii.2009.10.001 · Cited by 172
Taking a genetic scalpel to the Streptomyces colony
Chater, K. F. (1998) · Microbiology · doi:10.1099/00221287-144-6-1465 · Cited by 171
mazEF: a chromosomal toxin-antitoxin module that triggers programmed cell death in bacteria
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Mycelium Differentiation and Antibiotic Production in Submerged Cultures ofStreptomyces coelicolor
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Corning, P. A. (1998) · Journal of Social and Evolutionary Systems · doi:10.1016/s1061-7361(00)80003-x · Cited by 162
“For instance, colonies of the predatory myxobacterium (Myxocuccus xanthus) are jointly able to engulf much larger prey than any one or a few could do and, more important, are able collectively to secrete digestive enzymes in concentrations that would otherwise be dissipated in the surrounding medium (Bonner, 1988; Sha…”
BackgroundSynergy and self‐organization in the evolution of complex systems
Corning, P. A. (1995) · Systems Research · doi:10.1002/sres.3850120204 · Cited by 156
Allison, C., Emödy, L., Coleman, N., et al. (1994) · The Journal of Infectious Diseases · doi:10.1093/infdis/169.5.1155 · Cited by 156
“lence may be extended to other pathogenic swarming bacteria, such as Serratia and Clostridium species [6, 17].”
BackgroundSelf-engineering capabilities of bacteria
Ben‐Jacob, E., & Levine, H. (2005) · Journal of The Royal Society Interface · doi:10.1098/rsif.2005.0089 · Cited by 150
“information and internal assessment of external chemical messages [ 8-13 ].”
BackgroundMethodInfluentialSeeley, T. D., & Visscher, P. K. (2003) · Behavioral Ecology and Sociobiology · doi:10.1007/s00265-003-0664-6 · Cited by 151
“This is the " quorum sensing hypothesis, " related to quorum sensing in bacteria (Shapiro and Dworkin 1997), and studied already in ants (Pratt et al. 2002).”
BackgroundStudies of Bacterial Branching Growth Using Reaction-Diffusion Models for Colonial DevelopmentPreprint
Golding, I., Kozlovsky, Y., Cohen, I., & Ben‐Jacob, E. (1998) · Cited by 150
Deadly competition between sibling bacterial colonies
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Ben‐Jacob, E. (2003) · Philosophical Transactions of the Royal Society A Mathematical Physical and Engineering Sciences · doi:10.1098/rsta.2003.1199 · Cited by 143
“After a while, these cells di¬erentiate back to swimmers, lling in new regions of a `consolidation phase' (Shapiro 1988, 1995; Albrecht-Buehler 1990; Rauprich et al .”
BackgroundInterface growth and pattern formation in bacterial colonies
Matsushita, M., Wakita, J.-I., Itoh, H., et al. (1998) · Physica A Statistical Mechanics and its Applications · doi:10.1016/s0378-4371(97)00511-6 · Cited by 146
Immobilized Cell Technologies for the Dairy Industry
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Kolter, R., & Losick, R. M. (1998) · Science · doi:10.1126/science.280.5361.226 · Cited by 143
Filamentous Fungi: the Indeterminate Lifestyle and Microbial Ecology
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“Bacteria, in many cases, attempt to mimic the indeterminate lifestyle of the filamentous fungi, with its many advantages, by creating aggregated multicellular entities [99].”
BackgroundLubricating bacteria model for branching growth of bacterial colonies
Kozlovsky, Y., Cohen, I., Golding, I., & Ben‐Jacob, E. (1999) · Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics · doi:10.1103/physreve.59.7025 · Cited by 143
“Here we present an additional model which specifically includes an evolution equation for the lubricant excreted by the bacteria.”
BackgroundBoles, B. R., & McCarter, L. L. (2002) · Journal of Bacteriology · doi:10.1128/jb.184.21.5946-5954.2002 · Cited by 140
New aspects of the continuous phase transition in the scalar noise model (SNM) of collective motion
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“A O ] 1 5 N ov 2 00 6”
From snowflake formation to growth of bacterial colonies
Ben‐Jacob, E. (1993) · Contemporary Physics · doi:10.1080/00107519308222085 · Cited by 139
Immobilization of Infant Fecal Microbiota and Utilization in an in vitro Colonic Fermentation Model
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Spatio-temporal assembly of functional mineral scaffolds within microbial biofilms
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“Shapiro's proposal in 1988 was based largely on observing colony morphogenesis.(44) Bacterial morphogenesis is now considered an adaptive strategy for nearly all bacteria, among them Actinobacteria, Myxococcus and Firmicutes.”
BackgroundYang, Z., Ma, X., Tong, L. M., et al. (2000) · Journal of Bacteriology · doi:10.1128/jb.182.20.5793-5798.2000 · Cited by 134
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On Cellular Automaton Approaches to Modeling Biological Cells
Alber, M., Kiskowski, M. A., Glazier, J. A., & Jiang, Y. (2003) · The IMA volumes in mathematics and its applications · doi:10.1007/978-0-387-21696-6_1 · Cited by 132
“Philosophically, CA are attractive because their large-scale behaviors are completely self-organized rather than arising from responses to externally imposed signals [9, 133].”
BackgroundMethodInfluentialPierson, L. S., & Pierson, E. A. (1996) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.1996.tb08034.x · Cited by 125
Chen, H., Zhu, Y., & Hu, K. (2009) · Applied Soft Computing · doi:10.1016/j.asoc.2009.08.023 · Cited by 124
“In such a perspective, the bacterial colony behaves much like a multi-cellular organism or a social community [23].”
BackgroundPelling, A. E., Li, Y., Shi, W., & Gimzewski, J. K. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0501207102 · Cited by 122
“B live mainly as single- or multispecies multicellular communities (1, 2), usually assuming the form of surfaceassociated cell assemblages, or biofilms (3–5).”
BackgroundKim, H., Calcutt, M. J., Schmidt, F. J., & Chater, K. F. (2000) · Journal of Bacteriology · doi:10.1128/jb.182.5.1313-1320.2000 · Cited by 125
Evolutionary Cheating in Escherichia coli Stationary Phase Cultures
Vulić, M., & Kolter, R. (2001) · Genetics · doi:10.1093/genetics/158.2.519 · Cited by 121
Metagenomics and biological ontology
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Zhang, R., Brennan, T. J., & Lo, A. W. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1406755111 · Cited by 129
McMeekin, T. A., Bowman, J. P., McQuestin, O. J., Mellefont, L., Ross, T., & Tamplin, M. L. (2008) · International Journal of Food Microbiology · doi:10.1016/j.ijfoodmicro.2008.06.026 · Cited by 116
van Wezel, G. P., van der Meulen, J., Kawamoto, S., et al. (2000) · Journal of Bacteriology · doi:10.1128/jb.182.20.5653-5662.2000 · Cited by 115
Learning from Bacteria about Natural Information Processing
Ben‐Jacob, E. (2009) · Annals of the New York Academy of Sciences · doi:10.1111/j.1749-6632.2009.05022.x · Cited by 113
When Is Self-Organization Used in Biological Systems?
Seeley, T. D. (2002) · Biological Bulletin · doi:10.2307/1543484 · Cited by 112
“…their communicational networks (peripheral nervous systems) and central computers (central nervous systems); plants at all levels of evolutionary sophistication (nonvascular and vascular forms); and bacterial colonies (reviewed in Camazine et al., 2001; see also Shapiro and Dworkin, 1998).”
Background
Metadata
- Authors
- Shapiro, J. A.
- Corresponding author
- Shapiro, James A.
- ORCID
- Shapiro, James A.
- Venue
- Scientific American
- Published
- 1988-06
- Volume
- 258
- Issue
- 6
- Pages
- 82-89
- ISSN
- 0036-8733 (ISSN-L)
- OpenAlex
- W2037294630
- Cited by
- 524
- References
- 0
- Citations by year
- 2026: 3 · 2025: 13 · 2024: 12 · 2023: 11 · 2022: 4 · 2021: 15 · 2020: 10 · 2019: 11 · 2018: 12 · 2017: 11 · 2016: 18 · 2015: 17 · 2014: 20 · 2013: 13 · 2012: 21
- FWCI
- 2.37
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Scientific American (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Bacterial biofilms and quorum sensing
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Keywords
- bacteria, multicellularity, bacterial aggregation, bacterial social behavior, biofilm
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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