Molecular signature of CD34+ hematopoietic stem and progenitor cells of patients with CML in chronic phase
Abstract
In this study, we provide a molecular signature of highly enriched CD34+ cells from bone marrow of untreated patients with chronic myelogenous leukemia (CML) in chronic phase in comparison with normal CD34+ cells using microarrays covering 8746 genes. Expression data reflected several BCR-ABL-induced effects in primary CML progenitors, such as transcriptional activation of the classical mitogen-activated protein kinase pathway and the phosphoinositide-3 kinase/AKT pathway as well as downregulation of the proapoptotic gene IRF8. Moreover, novel transcriptional changes in comparison with normal CD34+ cells were identified. These include upregulation of genes involved in the transforming growth factorbeta pathway, fetal hemoglobin genes, leptin receptor, sorcin, tissue inhibitor of metalloproteinase 1, the neuroepithelial cell transforming gene 1 and downregulation of selenoprotein P. Additionally, genes associated with early hematopoietic stem cells (HSC) and leukemogenesis such as HoxA9 and MEIS1 were transcriptionally activated. Differential expression of differentiation-associated genes suggested an altered composition of the CD34+ cell population in CML. This was confirmed by subset analyses of chronic phase CML CD34+ cells showing an increase of the proportion of megakaryocyte-erythroid progenitors, whereas the proportion of HSC and granulocyte-macrophage progenitors was decreased in CML. In conclusion, our results give novel insights into the biology of CML and could provide the basis for identification of new therapeutic targets.
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Genes on AML-specific loops were enriched in hematopoiesis and myeloid transformation pathways.
“Gene set enrichment analysis showed that genes on AML-specific loops were enriched in hematopoiesis and myeloid transformation pathways28,29 (Extended Data Fig. 4c).”
From Subtype-specific 3D genome alteration in acute myeloid leukaemia (2022) · cites this paper as [29]
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- Authors
- Diaz-Blanco, E., Bruns, I., Neumann, F., Fischer, J. C., Graef, T., Rosskopf, M., Brors, B., Pechtel, S., Bork, S., Koch, A., Baer, A., Rohr, U.-P., Kobbe, G., Haeseler, A. V., Gattermann, N., Haas, R., & Kronenwett, R.
- Affiliations
- Heinrich Heine University Düsseldorf (DE)
- German Cancer Research Center (DE)
- University of Vienna (AT)
- Corresponding author
- Kronenwett, R
- ORCID
- Venue
- Leukemia
- Published
- 2007-01-25
- Volume
- 21
- Issue
- 3
- Pages
- 494-504
- ISSN
- 0887-6924 (ISSN-L)
- 1476-5551
- OpenAlex
- W2564723484
- Cited by
- 148
- References
- 78
- Citations by year
- 2026: 4 · 2025: 3 · 2024: 6 · 2023: 5 · 2022: 4 · 2021: 10 · 2020: 6 · 2019: 6 · 2018: 2 · 2017: 8 · 2016: 4 · 2015: 10 · 2014: 5 · 2013: 12 · 2012: 7
- FWCI
- 9.58
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Leukemia (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Health Sciences › Medicine › Hematology › Chronic Myeloid Leukemia Treatments
- Health Sciences › Medicine › Hematology › Acute Myeloid Leukemia Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Retinoids in leukemia and cellular processes
- Keywords
- chronic myeloid leukemia, chronic phase, CD34+ hematopoietic stem and progenitor cells, BCR-ABL, gene expression signatures, MAPK signaling, phosphoinositide 3-kinase/Akt pathway, IRF8, HOXA9, MEIS1, megakaryocyte-erythroid progenitors, CFU-GM, fetal hemoglobin, selenoprotein P, leukemogenesis, therapeutic target
- MeSH terms
- Cell Adhesion, Cell Differentiation, Cell Division, DNA, Neoplasm, Hematopoietic Stem Cells, Humans, Neoplasm Proteins, Receptors, Cell Surface, RNA, Messenger, RNA, Neoplasm, Neoplastic Stem Cells, Signal Transduction, Leukemia, Myelogenous, Chronic, BCR-ABL Positive, Leukemia, Myeloid, Chronic-Phase, Up-Regulation, Gene Expression Regulation, Leukemic, Fusion Proteins, bcr-abl, Apoptosis, Receptors, Growth Factor, DNA, Complementary, Antigens, CD34, Gene Expression Profiling, Intercellular Signaling Peptides and Proteins, Receptors, Leptin
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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