Modelling human embryoid body cell adhesion to a combinatorial library of polymer surfaces
Open accessAbstract
Designing materials to control biology is an intense focus of biomaterials and regenerative medicine research. Discovering and designing materials with appropriate biological compatibility or active control of cells and tissues is being increasingly undertaken using high throughput synthesis and assessment methods. We report a relatively simple but powerful machine-learning method of generating models that link microscopic or molecular properties of polymers or other materials to their biological effects. We illustrate the potential of these methods by developing the first robust, predictive, quantitative, and purely computational models of adhesion of human embryonic stem cell embryoid bodies (hEB) to the surfaces of a 496-member polymer micro array library.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Mediation of biomaterial-cell interactions by adsorbed proteins: a review
Wilson, C. J., Clegg, R. E., Leavesley, D. I., & Pearcy, M. J. (2005) · Tissue Engineering · doi:10.1089/ten.2005.11.1 · Cited by 1,696 · see citing works
Nanoliter-scale synthesis of arrayed biomaterials and application to human embryonic stem cells
Anderson, D. G., Levenberg, S., & Langer, R. (2004) · Nature Biotechnology · doi:10.1038/nbt981 · Cited by 747 · see citing works
Self-citationQuantitative Structure–Property Relationship Modeling of Diverse Materials Properties
Le, T. C., Epa, V. C., Burden, F. R., & Winkler, D. A. (2012) · Chemical Reviews · doi:10.1021/cr200066h · Cited by 563 · see citing works
Self-citationThe Impact of Contact Angle on the Biocompatibility of Biomaterials
Menzies, K. L., & Jones, L. (2010) · Optometry and Vision Science · doi:10.1097/opx.0b013e3181da863e · Cited by 561 · see citing works
Combinatorial development of biomaterials for clonal growth of human pluripotent stem cells
Mei, Y., Saha, K., Bogatyrev, S. R., Yang, J., Hook, A. L., Kalcioglu, Z. I., Cho, S., Mitalipova, M. M., Pyzocha, N., Rojas, F., et al. (2010) · Nature Materials · doi:10.1038/nmat2812 · Cited by 543 · see citing works
Self-citationAdhesion of cells to polystyrene surfaces.
Curtis, A. S. G., Forrester, J. V., McInnes, C. J., & Lawrie, F. (1983) · The Journal of Cell Biology · doi:10.1083/jcb.97.5.1500 · Cited by 437 · see citing works
An algorithm-based topographical biomaterials library to instruct cell fate
Unadkat, H. V., Hulsman, M., Cornelissen, K., Papenburg, B. J., Truckenmüller, R. K., Carpenter, A. E., Weßling, M., Post, G. F., Uetz, M., Reinders, M. J. T., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1109861108 · Cited by 380 · see citing works
Combinatorial discovery of polymers resistant to bacterial attachment
Hook, A. L., Chang, C., Yang, J., Luckett, J., Cockayne, A., Atkinson, S., Mei, Y., Bayston, R., Irvine, D. J., Langer, R., et al. (2012) · Nature Biotechnology · doi:10.1038/nbt.2316 · Cited by 374 · see citing works
Self-citationRobust QSAR Models Using Bayesian Regularized Neural Networks
Burden, F. R., & Winkler, D. A. (1999) · Journal of Medicinal Chemistry · doi:10.1021/jm980697n · Cited by 242 · see citing works
Self-citationYang, J., Mei, Y., Hook, A. L., Taylor, M., Urquhart, A. J., Bogatyrev, S. R., Langer, R., Anderson, D. G., Davies, M. C., & Alexander, M. R. (2010) · Biomaterials · doi:10.1016/j.biomaterials.2010.08.028 · Cited by 102 · see citing works
Self-citationUrquhart, A. J., Taylor, M., Anderson, D. G., Langer, R., Davies, M. C., & Alexander, M. R. (2007) · Analytical Chemistry · doi:10.1021/ac071560k · Cited by 80 · see citing works
Self-citationOptimal Sparse Descriptor Selection for QSAR Using Bayesian Methods
Burden, F. R., & Winkler, D. A. (2009) · QSAR & Combinatorial Science · doi:10.1002/qsar.200810173 · Cited by 76 · see citing works
Self-citationHigh Throughput Surface Characterisation of a Combinatorial Material Library
Urquhart, A. J., Anderson, D. G., Taylor, M., Alexander, M. R., Langer, R., & Davies, M. C. (2007) · Advanced Materials · doi:10.1002/adma.200700949 · Cited by 75 · see citing works
Self-citationMapping the Interactions among Biomaterials, Adsorbed Proteins, and Human Embryonic Stem Cells
Mei, Y., Gerecht, S., Taylor, M., Urquhart, A. J., Bogatyrev, S. R., Cho, S., Davies, M. C., Alexander, M. R., Langer, R., & Anderson, D. G. (2009) · Advanced Materials · doi:10.1002/adma.200803184 · Cited by 73 · see citing works
Self-citationAn Optimal Self‐Pruning Neural Network and Nonlinear Descriptor Selection in QSAR
Burden, F. R., & Winkler, D. A. (2009) · QSAR & Combinatorial Science · doi:10.1002/qsar.200810202 · Cited by 65 · see citing works
Self-citationProtein interactions with surfaces: cellular responses, complement activation, and newer methods
Szott, L. M., & Horbett, T. A. (2011) · Current Opinion in Chemical Biology · doi:10.1016/j.cbpa.2011.04.021 · Cited by 64 · see citing works
Gasteiger, J. (2006) · Journal of Medicinal Chemistry · doi:10.1021/jm0608964 · Cited by 52 · see citing works
Robinson, K. G., Nie, T., Baldwin, A. D., Yang, E., Kiick, K. L., & Akins, R. E. (2012) · Journal of Biomedical Materials Research Part A · doi:10.1002/jbm.a.34075 · Cited by 50 · see citing works
Taylor, M., Urquhart, A. J., Anderson, D. G., Williams, P. M., Langer, R., Alexander, M. R., & Davies, M. C. (2008) · Macromolecular Rapid Communications · doi:10.1002/marc.200800171 · Cited by 34 · see citing works
Self-citationTaylor, M., Urquhart, A. J., Anderson, D. G., Langer, R., Davies, M. C., & Alexander, M. R. (2008) · Surface and Interface Analysis · doi:10.1002/sia.2969 · Cited by 33 · see citing works
Self-citationHook, A. L., Yang, J., Chen, X., Roberts, C. J., Mei, Y., Anderson, D. G., Langer, R., Alexander, M. R., & Davies, M. C. (2011) · Soft Matter · doi:10.1039/c1sm06063e · Cited by 21 · see citing works
Self-citationWinkler, D. A., & Burden, F. R. (2012) · Molecular BioSystems · doi:10.1039/c2mb05439f · Cited by 15 · see citing works
Self-citation
Flagged first, then by citations
Cited by
Sorted by citations
Muratov, E. N., Bajorath, J., Sheridan, R. P., Tetko, I. V., Filimonov, D., Poroikov, V., Oprea, T. I., Baskin, I. I., Varnek, A., Roitberg, A., et al. (2020) · Chemical Society Reviews · doi:10.1039/d0cs00098a · Cited by 913 · see citing works
Self-citationRelevance Vector Machines: Sparse Classification Methods for QSAR
Burden, F. R., & Winkler, D. A. (2015) · Journal of Chemical Information and Modeling · doi:10.1021/acs.jcim.5b00261 · Cited by 51 · see citing works
Self-citationToward Interpretable Machine Learning Models for Materials Discovery
Mikulskis, P., Alexander, M. R., & Winkler, D. A. (2019) · Advanced Intelligent Systems · doi:10.1002/aisy.201900045 · Cited by 43 · see citing works
Self-citation
- Authors
- Epa, V. C., Yang, J., Mei, Y., Hook, A. L., Langer, R., Anderson, D. G., Davies, M. C., Alexander, M. R., & Winkler, D. A.
- Affiliations
- Commonwealth Scientific and Industrial Research Organisation (AU)
- University of Nottingham (GB)
- Koch Institute for Integrative Cancer Research At MIT (US)
- Corresponding author
- Winkler, David A.
- ORCID
- Venue
- Journal of Materials Chemistry
- Publisher
- Royal Society of Chemistry (RSC)
- Published
- 2012
- Volume
- 22
- Issue
- 39
- Pages
- 20902
- ISSN
- 0959-9428 (ISSN-L)
- 1364-5501
- PMC
- PMC3787298
- OpenAlex
- W2097122306
- Cited by
- 55
- References
- 22
- Citations by year
- 2026: 5 · 2025: 1 · 2024: 4 · 2023: 3 · 2022: 2 · 2021: 6 · 2020: 4 · 2019: 4 · 2018: 3 · 2017: 3 · 2016: 3 · 2015: 6 · 2014: 7 · 2013: 2 · 2012: 1
- FWCI
- 2.35
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- Journal of Materials Chemistry (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- DSpace@MIT (Massachusetts Institute of Technology) (submittedVersion, cc-by-nc-sa)
- Nottingham ePrints (University of Nottingham) (submittedVersion)
- Repository@Nottingham (University of Nottingham) (submittedVersion, cc-by)
- PMC
- Funders
- Wellcome Trust (085245)
- Topics
- Physical Sciences › Materials Science › Materials Chemistry › Machine Learning in Materials Science
- Physical Sciences › Materials Science › Surfaces, Coatings and Films › Polymer Surface Interaction Studies
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular Mechanics and Interactions
- Keywords
- cell adhesion, polymer microarrays, machine learning, polymer surface properties, biomaterials, high-throughput materials screening
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review