Essential roles for the products of the napABCD genes, but not napFGH, in periplasmic nitrate reduction by Escherichia coli K-12
Open accessAbstract
The seven nap genes at minute 47 on the Escherichia coli K-12 chromosome encode a functional nitrate reductase located in the periplasm. The molybdoprotein, NapA, is known to be essential for nitrate reduction. We now demonstrate that the two c-type cytochromes, the periplasmic NapB and the membrane-associated NapC, as well as a fourth polypeptide, NapD, are also essential for nitrate reduction in the periplasm by physiological substrates such as glycerol, formate and glucose. None of the three iron-sulphur proteins, NapF, NapG or NapH, are essential, irrespective of whether the bacteria are grown anaerobically in the presence of nitrate or fumarate as a terminal electron acceptor, or by glucose fermentation. Mutation of napD resulted in the total loss of Methyl Viologen-dependent nitrate reductase activity of the molybdoprotein, NapA, consistent with an earlier suggestion by others that NapD might be required for post-translational modification of NapA.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
napB gene deletion mutants in R. sphaeroides and E. coli exhibit very little activity.
“napB gene deletion mutants in R. sphaeroides215 and E. coli102 exhibit very little activity”
From Nitrate and periplasmic nitrate reductases (2014) · cites this paper as [102]
Mutational studies on R. sphaeroides, E. coli, and Wolinella succinogenes have given insight into the significance of each auxiliary nap gene in nitrate reduction via Nap.
“Mutational studies conducted on R. sphaeroides,215 E. coli,102 and Wolinella succinogenes105 have given insight into the significance of each auxiliary nap gene in nitrate reduction via Nap.”
From Nitrate and periplasmic nitrate reductases (2014) · cites this paper as [102]
NapC is considered an essential component of electron transport to NapA in organisms in which it is found.
“NapC, a tetra-heme transmembrane protein, is also considered to be an essential component of electron transport to NapA in organisms in which it is found.102”
From Nitrate and periplasmic nitrate reductases (2014) · cites this paper as [102]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Molecular cloning: A laboratory manual
Deininger, P. L. (1990) · Analytical Biochemistry · doi:10.1016/0003-2697(90)90595-z · Cited by 84,684 · see citing works
Thomas, P. E., Ryan, D. E., & Levin, W. (1976) · Analytical Biochemistry · doi:10.1016/0003-2697(76)90067-1 · Cited by 1,065 · see citing works
New method for generating deletions and gene replacements in Escherichia coli
Hamilton, C. M., Aldea, M., Washburn, B. K., Babitzke, P., & Kushner, S. R. (1989) · Journal of Bacteriology · doi:10.1128/jb.171.9.4617-4622.1989 · Cited by 678 · see citing works
Berks, B. C., Ferguson, S. J., Moir, J. W. B., & Richardson, D. J. (1995) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/0005-2728(95)00092-5 · Cited by 596 · see citing works
Site-directed insertion and deletion mutagenesis with cloned fragments in Escherichia coli
Winans, S. C., Elledge, S. J., Krueger, J. H., & Walker, G. C. (1985) · Journal of Bacteriology · doi:10.1128/jb.161.3.1219-1221.1985 · Cited by 336 · see citing works
Haddock, B. A., & Jones, C. W. (1977) · Bacteriological Reviews · doi:10.1128/mmbr.41.1.47-99.1977 · Cited by 291 · see citing works
Crystal structure of the first dissimilatory nitrate reductase at 1.9 Å solved by MAD methods
Dias, J. M., Than, M. E., Humm, A., Huber, R., Bourenkov, G. P., Bartunik, H. D., Bursakov, S., Calvete, J., Caldeira, J., Carneiro, C., et al. (1999) · Structure · doi:10.1016/s0969-2126(99)80010-0 · Cited by 286 · see citing works
Jones, R. W., & Garland, P. B. (1977) · Biochemical Journal · doi:10.1042/bj1640199 · Cited by 268 · see citing works
Nitrate reductase in Escherichia coli K-12: involvement of chlC, chlE, and chlG loci
Stewart, V. J., & MacGregor, C. H. (1982) · Journal of Bacteriology · doi:10.1128/jb.151.2.788-799.1982 · Cited by 257 · see citing works
Haddock, B. A., & Jones, C. W. (1977) · Bacteriological Reviews · doi:10.1128/br.41.1.47-99.1977 · Cited by 241 · see citing works
Rabin, R. S., & Stewart, V. J. (1993) · Journal of Bacteriology · doi:10.1128/jb.175.11.3259-3268.1993 · Cited by 223 · see citing works
Prototype of a Heme Chaperone Essential for Cytochrome c Maturation
Schulz, H., Hennecke, H., & Thöny‐Meyer, L. (1998) · Science · doi:10.1126/science.281.5380.1197 · Cited by 196 · see citing works
Requirement of Fnr and NarL functions for nitrate reductase expression in Escherichia coli K-12
Stewart, V. J. (1982) · Journal of Bacteriology · doi:10.1128/jb.151.3.1320-1325.1982 · Cited by 177 · see citing works
Structure and function of a periplasmic nitrate reductase in Alcaligenes eutrophus H16
Siddiqui, R. A., Warnecke‐Eberz, U., Hengsberger, A., Schneider, B., Kostka, S., & Friedrich, B. (1993) · Journal of Bacteriology · doi:10.1128/jb.175.18.5867-5876.1993 · Cited by 175 · see citing works
Blasco, F., Iobbi‐Nivol, C., Giordano, G., Chippaux, M., & Bonnefoy, V. (1989) · Molecular and General Genetics MGG · doi:10.1007/bf00331275 · Cited by 170 · see citing works
Blasco, F., Iobbi‐Nivol, C., Ratouchniak, J., Bonnefoy, V., & Chippaux, M. (1990) · Molecular and General Genetics MGG · doi:10.1007/bf00283030 · Cited by 168 · see citing works
POTTER, L. C., MILLINGTON, P., GRIFFITHS, L., THOMAS, G. H., & COLE, J. A. (1999) · Biochemical Journal · doi:10.1042/0264-6021:3440077 · Cited by 160 · see citing works
Self-citationA seven‐gene operon essential for formate‐dependent nitrite reduction to ammonia by enteric bacteria
Hussain, H. A., Grove, J. I., Griffiths, L., Busby, S. J. W., & Cole, J. A. (1994) · Molecular Microbiology · doi:10.1111/j.1365-2958.1994.tb01004.x · Cited by 156 · see citing works
Self-citationGrove, J. I., Tanapongpipat, S., Thomas, G. H., Griffiths, L., Crooke, H., & Cole, J. A. (1996) · Molecular Microbiology · doi:10.1046/j.1365-2958.1996.383914.x · Cited by 153 · see citing works
Self-citationNucleotide sequence of the erythromycin resistance gene of the conjugative transposon Tn1545
Trieu‐Cuot, P., Poyart, C., Carlier, C., & Courvalin, P. M. (1990) · Nucleic Acids Research · doi:10.1093/nar/18.12.3660 · Cited by 151 · see citing works
Berks, B. C., Richardson, D. J., Reilly, A., Willis, A. C., & Ferguson, S. J. (1995) · Biochemical Journal · doi:10.1042/bj3090983 · Cited by 138 · see citing works
Bedzyk, L. A., Wang, T., & Ye, R. W. (1999) · Journal of Bacteriology · doi:10.1128/jb.181.9.2802-2806.1999 · Cited by 127 · see citing works
Roldán, M. D., Sears, H. J., Cheesman, M. R., Ferguson, S. J., THOMSON, A. J., Berks, B. C., & Richardson, D. J. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.44.28785 · Cited by 124 · see citing works
Purification and characterization of the periplasmic nitrate reductase from Thiosphaera pantotropha
Berks, B. C., RICHARDSON, D. J., Robinson, C. V., Reilly, A., Aplin, R. T., & Ferguson, S. J. (1994) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1994.tb18605.x · Cited by 115 · see citing works
The regulation of metabolism in facultative bacteria III. The effect of nitrate
WIMPENNY, J. W. T., & COLE, J. (1967) · Biochimica et Biophysica Acta (BBA) - General Subjects · doi:10.1016/0304-4165(67)90298-x · Cited by 115 · see citing works
Self-citationDarwin, A. J., Hussain, H. A., Griffiths, L., Grove, J. I., Sambongi, Y., Busby, S. J. W., & Cole, J. A. (1993) · Molecular Microbiology · doi:10.1111/j.1365-2958.1993.tb01255.x · Cited by 99 · see citing works
Self-citationEnoch, H. G., & Lester, R. L. (1974) · Biochemical and Biophysical Research Communications · doi:10.1016/s0006-291x(74)80416-x · Cited by 96 · see citing works
Reyes, F., Roldán, M. D., Klipp, W., del Castillo, F. J., & Moreno‐Vivián, C. (1996) · Molecular Microbiology · doi:10.1111/j.1365-2958.1996.tb02475.x · Cited by 95 · see citing works
narI region of the Escherichia coli nitrate reductase (nar) operon contains two genes
Sodergren, E. J., & DeMoss, J. A. (1988) · Journal of Bacteriology · doi:10.1128/jb.170.4.1721-1729.1988 · Cited by 75 · see citing works
POPE, N. R., & Cole, J. A. (1982) · Microbiology · doi:10.1099/00221287-128-1-219 · Cited by 62 · see citing works
Self-citationBiochemical and immunological evidence for a second nitrate reductase in Escherichia coli K12
Iobbi‐Nivol, C., Santini, C., Bonnefoy, V., & Giordano, G. (1987) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1987.tb13438.x · Cited by 59 · see citing works
Transposition of Tn1545-delta 3 in the pathogenic Neisseriae: a genetic tool for mutagenesis
Nassif, X., Puaoi, D., & So, M. (1991) · Journal of Bacteriology · doi:10.1128/jb.173.7.2147-2154.1991 · Cited by 59 · see citing works
REYES, F., GAVIRA, M., CASTILLO, F., & MORENO-VIVIÁN, C. (1998) · Biochemical Journal · doi:10.1042/bj3310897 · Cited by 56 · see citing works
Chaudhry, G. R., & MacGregor, C. H. (1983) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(20)81967-x · Cited by 46 · see citing works
The CcmE protein fromEscherichia coliis a haem-binding protein
Reid, E., Eaves, D. J., & Cole, J. A. (1998) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.1998.tb13914.x · Cited by 45 · see citing works
Self-citationPurification and further characterization of the second nitrate reductase of Escherichia coli K12
Iobbi‐Nivol, C., Santini, C., Blasco, F., & Giordano, G. (1990) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1990.tb15450.x · Cited by 44 · see citing works
Blasco, F., Nunzi, F., Pommier, J., Brasseur, R., Chippaux, M., & Giordano, G. (1992) · Molecular Microbiology · doi:10.1111/j.1365-2958.1992.tb02002.x · Cited by 40 · see citing works
Thomas, G. H., POTTER, L. C., & Cole, J. A. (1999) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.1999.tb13564.x · Cited by 37 · see citing works
Self-citationTanapongpipat, S., Reid, E. G. F., Cole, J. A., & Crooke, H. (1998) · Biochemical Journal · doi:10.1042/bj3340355 · Cited by 25 · see citing works
Self-citation
Flagged first, then by citations
Cited by
Sorted by citations
The mononuclear molybdenum enzymes
Hille, R., Hall, J., & Basu, P. (2014) · Chemical Reviews · doi:10.1021/cr400443z · Cited by 1,738 · see citing works
Richardson, D. J. (2000) · Microbiology · doi:10.1099/00221287-146-3-551 · Cited by 544 · see citing works
Denitrifying genes in bacterial and Archaeal genomes
Philippot, L. (2002) · Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression · doi:10.1016/s0167-4781(02)00420-7 · Cited by 510 · see citing works
Functional, biochemical and genetic diversity of prokaryotic nitrate reductases
Richardson, D. J., Berks, B. C., Russell, D. A., Spiro, S., & Taylor, C. J. (2001) · Cellular and Molecular Life Sciences · doi:10.1007/pl00000845 · Cited by 466 · see citing works
Nitrate and periplasmic nitrate reductases
Sparacino-Watkins, C., Stolz, J. F., & Basu, P. (2014) · Chem. Soc. Rev. · doi:10.1039/c3cs60249d · Cited by 426 · see citing works
Enzymology and bioenergetics of respiratory nitrite ammonification
Simon, J. (2002) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2002.tb00616.x · Cited by 403 · see citing works
Brondijk, T. H. C., Fiegen, D., Richardson, D. J., & Cole, J. A. (2002) · Molecular Microbiology · doi:10.1046/j.1365-2958.2002.02875.x · Cited by 342 · see citing works
Self-citationThe Tat protein translocation pathway and its role in microbial physiology
Berks, B. C., Palmer, T., & Sargent, F. (2003) · Advances in microbial physiology/Advances in Microbial Physiology · doi:10.1016/s0065-2911(03)47004-5 · Cited by 251 · see citing works
Biosynthesis of inorganic nanomaterials using microbial cells and bacteriophages
Choi, Y., & Lee, S. Y. (2020) · Nature Reviews Chemistry · doi:10.1038/s41570-020-00221-w · Cited by 186 · see citing works
Schwartz, E., Henne, A., Cramm, R., Eitinger, T., Friedrich, B., & Gottschalk, G. (2003) · Journal of Molecular Biology · doi:10.1016/s0022-2836(03)00894-5 · Cited by 176 · see citing works
Stanley‐Wall, N. R., Findlay, K., Berks, B. C., & Palmer, T. (2001) · Journal of Bacteriology · doi:10.1128/jb.183.1.139-144.2001 · Cited by 169 · see citing works
POTTER, L. C., MILLINGTON, P., GRIFFITHS, L., THOMAS, G. H., & COLE, J. A. (1999) · Biochemical Journal · doi:10.1042/0264-6021:3440077 · Cited by 160 · see citing works
Self-citationThe prokaryotic Mo/W-bisPGD enzymes family: A catalytic workhorse in bioenergetic
Grimaldi, S., Schoepp‐Cothenet, B., Ceccaldi, P., Guigliarelli, B., & Magalon, A. (2013) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/j.bbabio.2013.01.011 · Cited by 159 · see citing works
Gao, H., Yang, Z. K., Barua, S., Reed, S. B., Romine, M. F., Nealson, K. H., Fredrickson, J. K., Tiedje, J. M., & Zhou, J. Z. (2009) · The ISME Journal · doi:10.1038/ismej.2009.40 · Cited by 153 · see citing works
Nitrate reduction in the periplasm of gram-negative bacteria
Potter, L., Angove, H., Richardson, D., & Cole, J. (2001) · Advances in Microbial Physiology · doi:10.1016/s0065-2911(01)45002-8 · Cited by 152 · see citing works
Self-citationLopez, C. A., Rivera-Chávez, F., Byndloss, M. X., & Bäumler, A. J. (2015) · Infection and Immunity · doi:10.1128/iai.00351-15 · Cited by 138 · see citing works
Kern, M., & Simon, J. (2009) · Biochimica et Biophysica Acta (BBA) - Bioenergetics · doi:10.1016/j.bbabio.2008.12.010 · Cited by 128 · see citing works
Clegg, S. J., Yu, F., Griffiths, L., & Cole, J. A. (2002) · Molecular Microbiology · doi:10.1046/j.1365-2958.2002.02858.x · Cited by 124 · see citing works
Self-citationComplete Genome Sequence of the Chemolithoautotrophic Marine Magnetotactic Coccus Strain MC-1
Schübbe, S., Williams, T. J., Xie, G. G., Kiss, H. E., Brettin, T. S., Martinez, D., Ross, C. A., Schüler, D., Cox, B. L., Nealson, K. H., et al. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.02874-08 · Cited by 115 · see citing works
Molybdenum enzymes in bacteria and their maturation
Magalon, A., Fedor, J. G., Walburger, A., & Weiner, J. H. (2011) · Coordination Chemistry Reviews · doi:10.1016/j.ccr.2010.12.031 · Cited by 114 · see citing works
The coordination and function of the redox centres of the membrane-bound nitrate reductases
Blasco, F., Guigliarelli, B., Magalon, A., Asso, M., Giordano, G., & Rothery, R. A. (2001) · Cellular and Molecular Life Sciences · doi:10.1007/pl00000846 · Cited by 113 · see citing works
The twin-arginine transport system: moving folded proteins across membranes
Sargent, F. (2007) · Biochemical Society Transactions · doi:10.1042/bst0350835 · Cited by 108 · see citing works
Gescher, J., Cordova, C. D., & Spormann, A. M. (2008) · Molecular Microbiology · doi:10.1111/j.1365-2958.2008.06183.x · Cited by 104 · see citing works
Sequence analysis of bacterial redox enzyme maturation proteins (REMPs)
Turner, R. J., Papish, A. L., & Sargent, F. (2004) · Canadian Journal of Microbiology · doi:10.1139/w03-117 · Cited by 102 · see citing works
Wu, Z., Wang, J., Liu, J., Wang, Y., Bi, C., & Zhang, X. (2019) · Microbial Cell Factories · doi:10.1186/s12934-019-1067-3 · Cited by 99 · see citing works
Transport and proofreading of proteins by the twin-arginine translocation (Tat) system in bacteria
Robinson, C., Matos, C. F. R. O., Beck, D. K., Ren, C., Lawrence, J., Vasisht, N., & Mendel, S. (2010) · Biochimica et Biophysica Acta (BBA) - Biomembranes · doi:10.1016/j.bbamem.2010.11.023 · Cited by 98 · see citing works
Vázquez-Torres, A., & Bäumler, A. J. (2016) · Current Opinion in Microbiology · doi:10.1016/j.mib.2015.09.002 · Cited by 92 · see citing works
Beliaev, A. S., Thompson, D. K., Khare, T., Lim, H., Brandt, C. C., Li, G., Murray, A. E., Heidelberg, J. F., Giometti, C. S., Yates, J. R., et al. (2002) · OMICS A Journal of Integrative Biology · doi:10.1089/15362310252780834 · Cited by 90 · see citing works
Nitrous oxide production in soil isolates of nitrate‐ammonifying bacteria
Streminska, M., Felgate, H., Rowley, G., Richardson, D. J., & Baggs, E. M. (2011) · Environmental Microbiology Reports · doi:10.1111/j.1758-2229.2011.00302.x · Cited by 88 · see citing works
BRONDIJK, T. H. C., NILAVONGSE, A., FILENKO, N., RICHARDSON, D. J., & COLE, J. A. (2004) · Biochemical Journal · doi:10.1042/bj20031115 · Cited by 87 · see citing works
Self-citationKatzen, F., Deshmukh, M., Daldal, F., & Beckwith, J. (2002) · The EMBO Journal · doi:10.1093/emboj/cdf405 · Cited by 87 · see citing works
Delgado, M. J., Bonnard, N., Tresierra-Ayala, Á., Bedmar, E. J., & Müller, P. (2003) · Microbiology · doi:10.1099/mic.0.26620-0 · Cited by 87 · see citing works
Lin, I. W., Lok, C., & Che, C. (2014) · Chemical Science · doi:10.1039/c4sc00138a · Cited by 84 · see citing works
Clarke, T. A., Cole, J. A., Richardson, D. J., & Hemmings, A. M. (2007) · Biochemical Journal · doi:10.1042/bj20070321 · Cited by 83 · see citing works
Self-citationSimon, J., Sänger, M., Schuster, S. C., & Groß, R. (2003) · Molecular Microbiology · doi:10.1046/j.1365-2958.2003.03544.x · Cited by 81 · see citing works
Simpson, P. J. L., Richardson, D. J., & Codd, R. (2009) · Microbiology · doi:10.1099/mic.0.034421-0 · Cited by 77 · see citing works
Sears, H. J., Sawers, G., Berks, B. C., Ferguson, S. J., & Richardson, D. J. (2000) · Microbiology · doi:10.1099/00221287-146-11-2977 · Cited by 76 · see citing works
Structural diversity in twin-arginine signal peptide-binding proteins
Maillard, J., Spronk, C. A. E. M., Buchanan, G., Lyall, V., Richardson, D. J., Palmer, T., Vuister, G. W., & Sargent, F. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0703967104 · Cited by 74 · see citing works
Marietou, A., Richardson, D., Cole, J., & Mohan, S. (2005) · FEMS Microbiology Letters · doi:10.1016/j.femsle.2005.05.042 · Cited by 68 · see citing works
Self-citationConstructing the wonders of the bacterial world: biosynthesis of complex enzymes
Sargent, F. (2007) · Microbiology · doi:10.1099/mic.0.2006/004762-0 · Cited by 68 · see citing works
Biogenesis of a Respiratory Complex Is Orchestrated by a Single Accessory Protein
Lanciano, P., Vergnes, A., Grimaldi, S., Guigliarelli, B., & Magalon, A. (2007) · Journal of Biological Chemistry · doi:10.1074/jbc.m700994200 · Cited by 66 · see citing works
Schulz, H., Pellicioli, E. C., & Thöny‐Meyer, L. (2000) · Molecular Microbiology · doi:10.1046/j.1365-2958.2000.02083.x · Cited by 62 · see citing works
Biogenesis of membrane bound respiratory complexes in Escherichia coli
Price, C. E., & Driessen, A. J. M. (2010) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2010.01.019 · Cited by 61 · see citing works
Nitrogen Metabolism Genes from Temperate Marine Sediments
Reyes, C., Schneider, D., Lipka, M., Thürmer, A., Böttcher, M. E., & Friedrich, M. W. (2017) · Marine Biotechnology · doi:10.1007/s10126-017-9741-0 · Cited by 57 · see citing works
Gavira, M., Roldán, M. D., Castillo, F., & Moreno-Vivián, C. (2002) · Journal of Bacteriology · doi:10.1128/jb.184.6.1693-1702.2002 · Cited by 55 · see citing works
Nilavongse, A., Brondijk, T. H. C., Overton, T. W., Richardson, D. J., Leach, E. R., & Cole, J. A. (2006) · Microbiology · doi:10.1099/mic.0.29157-0 · Cited by 54 · see citing works
Self-citationGates, A. J., Hughes, R. O., Sharp, S. R., Millington, P. D., Nilavongse, A., Cole, J. A., Leach, E.-R., Jepson, B., Richardson, D. J., & Butler, C. S. (2003) · FEMS Microbiology Letters · doi:10.1016/s0378-1097(03)00122-8 · Cited by 53 · see citing works
Self-citationKern, M., & Simon, J. (2008) · Molecular Microbiology · doi:10.1111/j.1365-2958.2008.06361.x · Cited by 51 · see citing works
Respiration of Nitrate and Nitrite
Cole, J. A., & Richardson, D. J. (2008) · EcoSal Plus · doi:10.1128/ecosal.3.2.5 · Cited by 48 · see citing works
Self-citationInsights on nitrate respiration by Shewanella
Chen, Y., & Wang, F. (2015) · Frontiers in Marine Science · doi:10.3389/fmars.2014.00080 · Cited by 46 · see citing works
Laurinavichene, T. V., & Tsygankov, A. A. (2001) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2001.tb10790.x · Cited by 46 · see citing works
Olmo-Mira, M. F., Gavira, M., Richardson, D. J., Castillo, F., Moreno-Vivián, C., & Roldán, M. D. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m406502200 · Cited by 44 · see citing works
Stanfill, S. B., Hecht, S. S., Joerger, A. C., González, P. J., Maia, L. B., Rivas, M. G., Moura, J. J. G., Gupta, A., Brun, N. E. L., Crack, J. C., et al. (2023) · Critical Reviews in Toxicology · doi:10.1080/10408444.2023.2264327 · Cited by 44 · see citing works
The Nitrogen Cycle: Denitrification and its Relationship to N2 Fixation
van Spanning, R. J. M., Delgado, M. J., & Richardson, D. J. (2005) · Springer eBooks · doi:10.1007/1-4020-3544-6_13 · Cited by 44 · see citing works
The function, biogenesis and regulation of the electron transport chains in Campylobacter jejuni
Taylor, A. J., & Kelly, D. J. (2019) · Advances in microbial physiology/Advances in Microbial Physiology · doi:10.1016/bs.ampbs.2019.02.003 · Cited by 43 · see citing works
Clegg, S. J., Jia, W., & Cole, J. A. (2006) · Microbiology · doi:10.1099/mic.0.28688-0 · Cited by 43 · see citing works
Self-citationEscherichia coli Cytochrome c Nitrite Reductase NrfA
Clarke, T. A., Mills, P. C., Poock, S. R., Butt, J. N., Cheesman, M. R., Cole, J. A., Hinton, J. C. D., Hemmings, A. M., Kemp, G. L., Söderberg, C. A. G., et al. (2008) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(07)37004-3 · Cited by 42 · see citing works
Self-citationAllen, J. W. A., Tomlinson, E. J., Hong, L., & Ferguson, S. J. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m204963200 · Cited by 42 · see citing works
Kern, M., Mager, A. M., & Simon, J. (2007) · Microbiology · doi:10.1099/mic.0.2007/009928-0 · Cited by 41 · see citing works
Biochemical and Mutational Characterization of the Heme Chaperone CcmE Reveals a Heme Binding Site
Enggist, E., Schneider, M. J., Schulz, H., & Thöny‐Meyer, L. (2002) · Journal of Bacteriology · doi:10.1128/jb.185.1.175-183.2003 · Cited by 41 · see citing works
Clarke, T. A., Vl, D., Seward, H. E., Burlat, B., Cole, J. A., Hemmings, A. M., & Richardson, D. J. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m407604200 · Cited by 40 · see citing works
Self-citationThe Tat Protein Export Pathway
Palmer, T., Sargent, F., & Berks, B. C. (2010) · EcoSal Plus · doi:10.1128/ecosalplus.4.3.2 · Cited by 39 · see citing works
Biosynthesis and Insertion of the Molybdenum Cofactor
Magalon, A., & Mendel, R. R. (2015) · EcoSal Plus · doi:10.1128/ecosalplus.esp-0006-2013 · Cited by 38 · see citing works
The Dissimilatory Reduction of Nitrate to Ammonia by Anaerobic Bacteria
Mohan, S. B., & Cole, J. A. (2007) · Elsevier eBooks · doi:10.1016/b978-044452857-5.50008-4 · Cited by 38 · see citing works
Self-citationRedundancy and specificity of multiple trigger factor chaperones in Desulfitobacteria
Maillard, J., Genevaux, P., & Holliger, C. (2011) · Microbiology · doi:10.1099/mic.0.050880-0 · Cited by 34 · see citing works
Toxicogenomic response of Pseudomonas aeruginosa to ortho-phenylphenol
Nde, C. W., Jang, H.-J., Toghrol, F., & Bentley, W. E. (2008) · BMC Genomics · doi:10.1186/1471-2164-9-473 · Cited by 33 · see citing works
Alst, N. E. V., Sherrill, L. A., Iglewski, B. H., & Haidaris, C. G. (2009) · Canadian Journal of Microbiology · doi:10.1139/w09-065 · Cited by 33 · see citing works
Koziaeva, V. V., Dziuba, M. V., Leão, P., Uzun, M., Krutkina, M. S., & Grouzdev, D. S. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.02290 · Cited by 31 · see citing works
Designing a periplasmic photosynthetic biohybrid system for succinate and electric energy production
Liang, G., Xu, X., Chen, X., Wu, J., Song, W., Wei, W., Liu, J., Li, X., Liu, L., & Gao, C. (2023) · Chemical Engineering Journal · doi:10.1016/j.cej.2023.147152 · Cited by 31 · see citing works
Putative mineral-specific proteins synthesized by a metal reducing bacterium
Lower, B. H. (2005) · American Journal of Science · doi:10.2475/ajs.305.6-8.687 · Cited by 30 · see citing works
Taoka, A., Yoshimatsu, K., Kanemori, M., & Fukumori, Y. (2003) · Canadian Journal of Microbiology · doi:10.1139/w03-028 · Cited by 28 · see citing works
Ellington, M. J., Sawers, R. G., Sears, H. J., Spiro, S., Richardson, D. J., & Ferguson, S. J. (2003) · Microbiology · doi:10.1099/mic.0.26277-0 · Cited by 26 · see citing works
BRIGÉ, A., COLE, J. A., HAGEN, W. R., GUISEZ, Y., & Van BEEUMEN, J. J. (2001) · Biochemical Journal · doi:10.1042/0264-6021:3560851 · Cited by 23 · see citing works
Self-citationLuo, Z., Li, Q., Xie, Y.-G., Lv, A.-P., Qi, Y.-L., Li, M., Qu, Y.-N., Liu, Z., Li, Y.-X., Rao, Y.-Z., et al. (2024) · The ISME Journal · doi:10.1093/ismejo/wrad031 · Cited by 23 · see citing works
The Tat-dependent protein translocation pathway
Hou, B., & Brüser, T. (2011) · BioMolecular Concepts · doi:10.1515/bmc.2011.040 · Cited by 21 · see citing works
NapB Restores cytochrome c biosynthesis in bacterial dsbD-deficient mutants
Guo, K., Xue, F., Sun, W., Han, S., Wu, S., & Gao, H. (2022) · Communications Biology · doi:10.1038/s42003-022-03034-3 · Cited by 20 · see citing works
Grahl, S., Maillard, J., Spronk, C. A. E. M., Vuister, G. W., & Sargent, F. (2012) · Molecular Microbiology · doi:10.1111/j.1365-2958.2012.08005.x · Cited by 17 · see citing works
Wang, O., Melnyk, R. A., Mehta‐Kolte, M. G., Youngblut, M. D., Carlson, H. K., & Coates, J. D. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.00376 · Cited by 15 · see citing works
Fuchs, H., Ullrich, S. R., & Hedrich, S. (2024) · Scientific Reports · doi:10.1038/s41598-024-54097-7 · Cited by 14 · see citing works
Bianucci, E., Fullana, C., Furlán, A., & Castro, S. (2013) · Enzyme and Microbial Technology · doi:10.1016/j.enzmictec.2013.07.007 · Cited by 14 · see citing works
Subsurface biogeochemical cycling of nitrogen in the actively serpentinizing Samail Ophiolite, Oman
Rempfert, K. R., Nothaft, D. B., Kraus, E., Asamoto, C. K., Evans, R. D., Spear, J. R., Matter, J., Kopf, S., & Templeton, A. S. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1139633 · Cited by 14 · see citing works
Klatte, T., Evans, L. E., Whitehead, R. N., & Cole, J. A. (2011) · Biochemical Society Transactions · doi:10.1042/bst0390321 · Cited by 13 · see citing works
Self-citationEnggist, E., & Thöny‐Meyer, L. (2003) · Journal of Bacteriology · doi:10.1128/jb.185.13.3821-3827.2003 · Cited by 13 · see citing works
Liu, Y.-W., Hitchcock, A., Salmon, R. C., & Kelly, D. J. (2014) · Microbiology · doi:10.1099/mic.0.080713-0 · Cited by 12 · see citing works
Schulz, H., & Thöny‐Meyer, L. (2000) · Journal of Bacteriology · doi:10.1128/jb.182.23.6831-6833.2000 · Cited by 11 · see citing works
Seif-Eddine, M., Biaso, F., Arias-Cartín, R., Pilet, E., Rendon, J., Lyubenova, S., Seduk, F., Guigliarelli, B., Magalon, A., & Grimaldi, S. (2017) · ChemPhysChem · doi:10.1002/cphc.201700571 · Cited by 10 · see citing works
Kanukollu, S., Voget, S., Pohlner, M., Vandieken, V., Petersen, J., Kyrpides, N. C., Woyke, T., Shapiro, N., Göker, M., Klenk, H., et al. (2016) · Standards in Genomic Sciences · doi:10.1186/s40793-016-0143-0 · Cited by 10 · see citing works
Thakur, P., & Gauba, P. (2024) · Biochemical Genetics · doi:10.1007/s10528-024-10677-w · Cited by 8 · see citing works
Tamegai, H., IKEDA, E., Kato, C., & Horikoshi, K. (2007) · Bioscience Biotechnology and Biochemistry · doi:10.1271/bbb.70256 · Cited by 8 · see citing works
Inexpensive microbial dipstick diagnostic for nitrate in water
Aukema, K. G., & Wackett, L. P. (2019) · Environmental Science Water Research & Technology · doi:10.1039/c8ew00834e · Cited by 6 · see citing works
History of Maturation of Prokaryotic Molybdoenzymes—A Personal View
Magalon, A. (2023) · Molecules · doi:10.3390/molecules28207195 · Cited by 4 · see citing works
The Nrf H Cytochrome c Quinol Dehydrogenase
Rodrigues, M. L., Pereira, I. A. C., & Archer, M. (2011) · Encyclopedia of Inorganic and Bioinorganic Chemistry · doi:10.1002/9781119951438.eibc0648 · Cited by 3 · see citing works
Kim, H. R. (2003) · Bulletin of the Korean Chemical Society · doi:10.5012/bkcs.2003.24.12.1849 · Cited by 1 · see citing works
House, B. (2003) · Research Exchange (Washington State University)
Cole, J. A. (2014) · ASM Press eBooks · doi:10.1128/9781555815806.ch14
Self-citationGenetic and Environmental Mediators of Salmonella Infection
Huang, Y. (2007) · NCSU Libraries Repository (North Carolina State University Libraries)
Nitrogen metabolism in iron-respiring bacteria
Hsieh, C. L. (2003)
The Nrf H Cytochrome c Quinol Dehydrogenase
Rodrigues, M. L., Pereira, I. A. C., & Archer, M. (2004) · Handbook of Metalloproteins · doi:10.1002/0470028637.met221
- Authors
- POTTER, L. C., & COLE, J. A.
- Affiliations
- University of Birmingham (GB)
- ORCID
- COLE, Jeffrey A.
- Venue
- Biochemical Journal
- Publisher
- Portland Press Ltd.
- Published
- 1999-11-08
- Volume
- 344
- Issue
- 1
- Pages
- 69-76
- ISSN
- 0264-6021 (ISSN-L)
- 1470-8728
- PMC
- PMC1220615
- OpenAlex
- W1993696884
- Cited by
- 93
- References
- 38
- Citations by year
- 2024: 3 · 2023: 2 · 2022: 1 · 2020: 1 · 2019: 4 · 2018: 1 · 2017: 1 · 2016: 1 · 2015: 4 · 2014: 4 · 2013: 3 · 2012: 1
- FWCI
- 8.33
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Biochemical Journal (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- Directorate for Biological Sciences
- Medical Research Council
- Topics
- Physical Sciences › Energy › Renewable Energy, Sustainability and the Environment › Metalloenzymes and iron-sulfur proteins
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Physical Sciences › Materials Science › Materials Chemistry › Enzyme Structure and Function
- Keywords
- gene essentiality, post-translational modification, Escherichia coli K-12, glycerol, formate, glucose
- MeSH terms
- Bacterial Proteins, Base Sequence, Cytochrome c Group, Electron Transport, Escherichia coli, Fermentation, Fumarates, Genes, Bacterial, Glucose, Mutation, Nitrate Reductases, Oxidation-Reduction, Plasmids, Gene Deletion, DNA Primers, Nitric Acid, Periplasm, Escherichia coli Proteins, Nitrate Reductase
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review