The ribonome: a dominant force in co‐ordinating gene expression

Untitled work

Bartel (2004) · doi:10.1016/s0092-8674(04)00045-5 · Cited by 34,714 · see citing works

Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells

Valadi, H., Ekström, K., Bossios, A., Sjöstrand, M., Lee, J. J., & Lötvall, J. O. (2007) · Nature Cell Biology · doi:10.1038/ncb1596 · Cited by 12,834 · see citing works

Correlation between Protein and mRNA Abundance in Yeast

Gygi, S. P., Rochon, Y., Franza, B. R., & Aebersold, R. (1999) · Molecular and Cellular Biology · doi:10.1128/mcb.19.3.1720 · Cited by 3,819 · see citing works

Transcriptional regulatory code of a eukaryotic genome

Harbison, C. T., Gordon, D. B., Lee, T. I., Rinaldi, N. J., MacIsaac, K. D., Danford, T., Hannett, N. M., Tagne, J., Reynolds, D. B., Yoo, J. Y., et al. (2004) · Nature · doi:10.1038/nature02800 · Cited by 2,116 · see citing works

Embryonic stem cell-derived microvesicles reprogram hematopoietic progenitors: evidence for horizontal transfer of mRNA and protein delivery

Ratajczak, J., Miękus, K., Kucia, M., Zhang, J., Reca, R., Dvořák, P., & Ratajczak, M. Z. (2006) · Leukemia · doi:10.1038/sj.leu.2404132 · Cited by 1,630 · see citing works

Relief of microRNA-Mediated Translational Repression in Human Cells Subjected to Stress

Bhattacharyya, S. N., Habermacher, R., Martiné, U., Closs, E. I., & Filipowicz, W. (2006) · Cell · doi:10.1016/j.cell.2006.04.031 · Cited by 1,332 · see citing works

RNA regulons: coordination of post-transcriptional events

Keene, J. D. (2007) · Nature Reviews Genetics · doi:10.1038/nrg2111 · Cited by 1,321 · see citing works

RNA-binding proteins in human genetic disease

Gebauer, F., Schwarzl, T., Valcárcel, J., & Hentze, M. W. (2020) · Nature Reviews Genetics · doi:10.1038/s41576-020-00302-y · Cited by 1,174 · see citing works

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation

Lu, P., Vogel, C., Wang, R., Yao, X., & Marcotte, E. M. (2007) · Nature Biotechnology · doi:10.1038/nbt1270 · Cited by 1,139 · see citing works

CLIP Identifies Nova-Regulated RNA Networks in the Brain

Ule, J., Jensen, K. B., Ruggiu, M., Mele, A., Ule, A., & Darnell, R. B. (2003) · Science · doi:10.1126/science.1090095 · Cited by 1,120 · see citing works

Exosomes: endosomal-derived vesicles shipping extracellular messages

Février, B., & Raposo, G. (2004) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2004.06.003 · Cited by 1,013 · see citing works

From Birth to Death: The Complex Lives of Eukaryotic mRNAs

Moore, M. J. (2005) · Science · doi:10.1126/science.1111443 · Cited by 1,003 · see citing works

The spliceosome deposits multiple proteins 20–24 nucleotides upstream of mRNA exon–exon junctions

Hir, H. L., Izaurralde, E., Maquat, L. E., & Moore, M. J. (2000) · The EMBO Journal · doi:10.1093/emboj/19.24.6860 · Cited by 970 · see citing works

A Unified Theory of Gene Expression

Orphanides, G., & Reinberg, D. (2002) · Cell · doi:10.1016/s0092-8674(02)00655-4 · Cited by 898 · see citing works

Involvement of MicroRNA in AU-Rich Element-Mediated mRNA Instability

Jing, Q., Huang, S., Guth, S., Zarubin, T., Motoyama, A. B., Chen, J., Padova, F. D., Lin, S., Gram, H., & Han, J. (2005) · Cell · doi:10.1016/j.cell.2004.12.038 · Cited by 849 · see citing works

Shuttling of pre-mRNA binding proteins between nucleus and cytoplasm

Piñol-Roma, S., & Dreyfuss, G. (1992) · Nature · doi:10.1038/355730a0 · Cited by 842 · see citing works

Movement of Eukaryotic mRNAs Between Polysomes and Cytoplasmic Processing Bodies

Brengues, M., Teixeira, D., & Parker, R. (2005) · Science · doi:10.1126/science.1115791 · Cited by 796 · see citing works

Integrated Genomic and Proteomic Analyses of Gene Expression in Mammalian Cells

Tian, Q., Stepaniants, S., Mao, M., Weng, L., Feetham, M. C., Doyle, M. J., Yi, E. C., Dai, H. A., Thórsson, V., Eng, J. K., et al. (2004) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m400055-mcp200 · Cited by 778 · see citing works

Precision and functional specificity in mRNA decay

Wang, Y., Liu, C. L., Storey, J. D., Tibshirani, R. J., Herschlag, D., & Brown, P. O. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.092538799 · Cited by 708 · see citing works

The Regulation of Exosome Secretion: a Novel Function of the p53 Protein

Yu, X., Harris, S. L., & Levine, A. J. (2006) · Cancer Research · doi:10.1158/0008-5472.can-05-4579 · Cited by 688 · see citing works

Complementary Profiling of Gene Expression at the Transcriptome and Proteome Levels in Saccharomyces cerevisiae

Griffin, T. J., Gygi, S. P., Ideker, T. E., Rist, B., Eng, J. K., Hood, L., & Aebersold, R. H. (2002) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m200001-mcp200 · Cited by 663 · see citing works

Extensive Association of Functionally and Cytotopically Related mRNAs with Puf Family RNA-Binding Proteins in Yeast

Gerber, A. P., Herschlag, D., & Brown, P. O. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0020079 · Cited by 651 · see citing works

RNA-binding proteins in human genetic disease

Lukong, K. E., Chang, K.-W., Khandjian, E. W., & Richard, S. (2008) · Trends in Genetics · doi:10.1016/j.tig.2008.05.004 · Cited by 649 · see citing works

The Trojan exosome hypothesis

Gould, S. J., Booth, A. M., & Hildreth, J. E. K. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1831413100 · Cited by 638 · see citing works

RIP-Chip: the isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts

Keene, J. D., Komisarow, J. M., & Friedersdorf, M. B. (2006) · Nature Protocols · doi:10.1038/nprot.2006.47 · Cited by 612 · see citing works

Diverse RNA-Binding Proteins Interact with Functionally Related Sets of RNAs, Suggesting an Extensive Regulatory System

Hogan, D. J., Riordan, D. P., Gerber, A. P., Herschlag, D., & Brown, P. O. (2008) · PLoS Biology · doi:10.1371/journal.pbio.0060255 · Cited by 609 · see citing works

Decay Rates of Human mRNAs: Correlation With Functional Characteristics and Sequence AttributesPreprint

Yang, E., van Nimwegen, E., Zavolan, M., Rajewsky, N., Schroeder, M., Magnasco, M., & Darnell, J. E., Jr. (2003) · Genome Research · doi:10.1101/gr.1272403 · Cited by 598 · see citing works

Phosphorylation of HuR by Chk2 Regulates SIRT1 Expression

Abdelmohsen, K., Pullmann, R., Lal, A., Kim, H. H., Galbán, S., Yang, X., Blethrow, J. D., Walker, M., Shubert, J., Gillespie, D. A., et al. (2007) · Molecular Cell · doi:10.1016/j.molcel.2007.01.011 · Cited by 527 · see citing works

Introns and the origin of nucleus–cytosol compartmentalization

Martin, W. F., & Koonin, E. V. (2006) · Nature · doi:10.1038/nature04531 · Cited by 497 · see citing works

Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm

Li, X., MacArthur, S., Bourgon, R., Nix, D. A., Pollard, D. A., Iyer, V. N., Hechmer, A., Simirenko, L., Stapleton, M., Hendriks, C. L. L., et al. (2008) · eScholarship (California Digital Library) · doi:10.1371/journal.pbio.0060027 · Cited by 479 · see citing works

Eukaryotic mRNPs May Represent Posttranscriptional Operons

Keene, J. D., & Tenenbaum, S. A. (2002) · Molecular Cell · doi:10.1016/s1097-2765(02)00559-2 · Cited by 457 · see citing works

RNA-binding protein HuR enhances p53 translation in response to ultraviolet light irradiation

Mazan-Mamczarz, K., Galbán, S., de Silanes, I. L., Martindale, J. L., Atasoy, U., Keene, J. D., & Gorospe, M. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1432104100 · Cited by 445 · see citing works

Oncogenic Ras and Akt signaling contribute to glioblastoma formation by differential recruitment of existing mRNAs to polysomes.

Rajasekhar, V. K., Viale, A., Socci, N. D., Wiedmann, M., Hu, X., & Holland, E. C. (2003) · Molecular Cell · doi:10.1016/s1097-2765(03)00395-2 · Cited by 420 · see citing works

Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays

Tenenbaum, S. A., Carson, C. C., Lager, P. J., & Keene, J. D. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.97.26.14085 · Cited by 397 · see citing works

Tumour-derived microvesicles carry several surface determinants and mRNA of tumour cells and transfer some of these determinants to monocytes

Baj‐Krzyworzeka, M., Szatanek, R., Węglarczyk, K., Baran, J., Urbanowicz, B., Brański, P., Ratajczak, M. Z., & Zembala, M. (2005) · Cancer Immunology Immunotherapy · doi:10.1007/s00262-005-0075-9 · Cited by 397 · see citing works

Functional Specificity among Ribosomal Proteins Regulates Gene Expression

Komili, S., Farny, N. G., Roth, F. P., & Silver, P. A. (2007) · Cell · doi:10.1016/j.cell.2007.08.037 · Cited by 390 · see citing works

Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53

Wang, T., Zeng, J., Lowe, C. B., Sellers, R. G., Salama, S. R., Yang, M., Burgess, S. M., Brachmann, R. K., & Haussler, D. H. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0703637104 · Cited by 389 · see citing works

Genomic-scale measurement of mRNA turnover and the mechanisms of action of the anti-cancer drug flavopiridol

Lam, L. T., Pickeral, O. K., Peng, A. C., Rosenwald, A., Hurt, E. M., Giltnane, J. M., Averett, L., Zhao, H. G., Davis, R. E., Sathyamoorthy, M., et al. (2001) · Genome biology · doi:10.1186/gb-2001-2-10-research0041 · Cited by 371 · see citing works

Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs

Landthaler, M., Gaidatzis, D., Rothballer, A., Chen, P., Soll, S. J., Dinic, L., Ojo, T., Hafner, M., Zavolan, M., & Tuschl, T. (2008) · RNA · doi:10.1261/rna.1351608 · Cited by 355 · see citing works

Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae

Washburn, M. P., Koller, A. A., Oshiro, G., Ulaszek, R. R., Plouffe, D., Deciu, C., Winzeler, E. A., & Yates, J. R. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0634629100 · Cited by 354 · see citing works

Genome-Wide Analysis of mRNA Stability Using Transcription Inhibitors and Microarrays Reveals Posttranscriptional Control of Ribosome Biogenesis Factors

Grigull, J., Mnaimneh, S., Pootoolal, J., Robinson, M. D., & Hughes, T. R. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.12.5534-5547.2004 · Cited by 342 · see citing works

HuR binding to cytoplasmic mRNA is perturbed by heat shock

Gallouzi, I., Brennan, C. M., Stenberg, M. G., Swanson, M. S., Eversole, A., Maizels, N., & STEITZ, J. A. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.97.7.3073 · Cited by 326 · see citing works

Origin of retroviruses from cellular moveable genetic elements

Temin, H. M. (1980) · Cell · doi:10.1016/0092-8674(80)90420-1 · Cited by 307 · see citing works

A Universal Framework for Regulatory Element Discovery across All Genomes and Data Types

Elemento, O., Slonim, N., & Tavazoie, S. (2007) · Molecular Cell · doi:10.1016/j.molcel.2007.09.027 · Cited by 306 · see citing works

Multilevel Regulation of Gene Expression by MicroRNAs

Makeyev, E. V., & Maniatis, T. (2008) · Science · doi:10.1126/science.1152326 · Cited by 300 · see citing works

Why is Hu where? Shuttling of early-response-gene messenger RNA subsets

Keene, J. D. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.1.5 · Cited by 294 · see citing works

Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster

Gerber, A. P., Luschnig, S., Krasnow, M. A., Brown, P. O., & Herschlag, D. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0509260103 · Cited by 277 · see citing works

Comparative Analysis of mRNA Targets for Human PUF-Family Proteins Suggests Extensive Interaction with the miRNA Regulatory System

Galgano, A., Forrer, M., Jaśkiewicz, Ł., Kanitz, A., Zavolan, M., & Gerber, A. P. (2008) · PLoS ONE · doi:10.1371/journal.pone.0003164 · Cited by 266 · see citing works

The ribosome filter hypothesis

Mauro, V. P., & Edelman, G. M. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.192442499 · Cited by 260 · see citing works

Posttranscriptional gene regulation by RNA-binding proteins during oxidative stress: implications for cellular senescence

Abdelmohsen, K., Kuwano, Y., Kim, H. H., & Gorospe, M. (2008) · Biological Chemistry · doi:10.1515/bc.2008.022 · Cited by 258 · see citing works

Reprogramming fibroblasts to express T-cell functions using cell extracts

Håkelien, A.-M., Landsverk, H. B., Robl, J. M., Skålhegg, B. S., & Collas, P. (2002) · Nature Biotechnology · doi:10.1038/nbt0502-460 · Cited by 237 · see citing works

p38-Dependent Phosphorylation of the mRNA Decay-Promoting Factor KSRP Controls the Stability of Select Myogenic Transcripts

Briata, P., Forcales, S. V., Ponassi, M., Corte, G., Chen, C., Karin, M., Puri, P., & Gherzi, R. (2005) · Molecular Cell · doi:10.1016/j.molcel.2005.10.021 · Cited by 236 · see citing works

Lipopolysaccharide-induced Methylation of HuR, an mRNA-stabilizing Protein, by CARM1

Li, H., Park, S., Kilburn, B., Jelinek, M. A., Henschen-Edman, A. H., Aswad, D. W., Stallcup, M. R., & Laird‐Offringa, I. A. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m206187200 · Cited by 233 · see citing works

Ribonucleoprotein infrastructure regulating the flow of genetic information between the genome and the proteome

Keene, J. D. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.111145598 · Cited by 230 · see citing works

Global analysis of Escherichia coli RNA degradosome function using DNA microarrays

Bernstein, J. A., Lin, P.-H., Cohen, S. N., & Lin‐Chao, S. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0308747101 · Cited by 230 · see citing works

Yeast Mitochondrial Biogenesis: A Role for the PUF RNA-Binding Protein Puf3p in mRNA Localization

Saint-Georges, Y., Garcia, M., Delaveau, T., Jourdren, L., Crom, S. L., Lemoine, S., Tanty, V., Devaux, F., & Jacq, C. (2008) · PLoS ONE · doi:10.1371/journal.pone.0002293 · Cited by 230 · see citing works

Coupling and coordination in gene expression processes: a systems biology view

Komili, S., & Silver, P. A. (2008) · Nature Reviews Genetics · doi:10.1038/nrg2223 · Cited by 218 · see citing works

Signalling pathways regulating nucleo-cytoplasmic shuttling of the mRNA-binding protein HuR

Doller, A., Pfeilschifter, J. M., & Eberhardt, W. (2008) · Cellular Signalling · doi:10.1016/j.cellsig.2008.05.007 · Cited by 215 · see citing works

AMP-Activated Kinase Regulates Cytoplasmic HuR

Wang, W., Fan, J., Yang, X., Fürer-Galbán, S., de Silanes, I. L., von Kobbe, C., Guo, J., Georas, S. N., Foufelle, F., Hardie, D. G., et al. (2002) · Molecular and Cellular Biology · doi:10.1128/mcb.22.10.3425-3436.2002 · Cited by 208 · see citing works

Analysis of Turnover and Translation Regulatory RNA-Binding Protein Expression through Binding to Cognate mRNAs

Pullmann, R., Kim, H. H., Abdelmohsen, K., Lal, A., Martindale, J. L., Yang, X., & Gorospe, M. (2007) · Molecular and Cellular Biology · doi:10.1128/mcb.00500-07 · Cited by 199 · see citing works

Post-transcriptional gene regulation: From genome-wide studies to principles

Halbeisen, R. E., Galgano, A., Scherrer, T., & Gerber, A. P. (2007) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-007-7447-6 · Cited by 195 · see citing works

Protein Kinase Cα-dependent Phosphorylation of the mRNA-stabilizing Factor HuR: Implications for Posttranscriptional Regulation of Cyclooxygenase-2

Doller, A., Huwiler, A., Müller, R., Radeke, H. H., Pfeilschifter, J. M., & Eberhardt, W. (2007) · Molecular Biology of the Cell · doi:10.1091/mbc.e06-09-0850 · Cited by 191 · see citing works

Alteration of Marrow Cell Gene Expression, Protein Production, and Engraftment into Lung by Lung-Derived Microvesicles: A Novel Mechanism for Phenotype Modulation

Aliotta, J. M., Sanchez-Guijo, F. M., Dooner, G. J., Johnson, K. W., Dooner, M. S., Greer, K., Greer, D. A., Pimentel, J., Kolankiewicz, L. M., Puente, N. A., et al. (2007) · Stem Cells · doi:10.1634/stemcells.2007-0128 · Cited by 180 · see citing works

Integrating gene and protein expression data: pattern analysis and profile mining

Cox, B., Kislinger, T., & Emili, A. (2005) · Methods · doi:10.1016/j.ymeth.2004.08.021 · Cited by 176 · see citing works

Search for organising principles: understanding in systems biology

Mesarović, M., Keene, J. D., & Sreenath, S. N. (2004) · Systems Biology · doi:10.1049/sb:20045010 · Cited by 168 · see citing works

A systems view of mRNP biologyPreprint

Hieronymus, H., & Silver, P. A. (2004) · Genes & Development · doi:10.1101/gad.1256904 · Cited by 157 · see citing works

Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1.

Gao, F., Carson, C. C., Levine, T., & Keene, J. D. (1994) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.91.23.11207 · Cited by 156 · see citing works

Ribonomic Analysis of Human Pum1 Reveals <i>cis-trans</i> Conservation across Species despite Evolution of Diverse mRNA Target Sets

Morris, A. R., Mukherjee, N., & Keene, J. D. (2008) · Molecular and Cellular Biology · doi:10.1128/mcb.00155-08 · Cited by 155 · see citing works

Early evolution of histone mRNA 3′ end processing

López, M. D., & Samuelsson, T. (2007) · RNA · doi:10.1261/rna.782308 · Cited by 152 · see citing works

Partitioning and translation of mRNAs encoding soluble proteins on membrane-bound ribosomes

Lerner, R. S., Seiser, R. M., Zheng, T., Lager, P. J., Reedy, M. C., Keene, J. D., & Nicchitta, C. V. (2003) · RNA · doi:10.1261/rna.5610403 · Cited by 150 · see citing works

Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance

Hendrickson, D. G., Hogan, D. J., Herschlag, D., Ferrell, J. E., & Brown, P. O. (2008) · PLoS ONE · doi:10.1371/journal.pone.0002126 · Cited by 143 · see citing works

Signal sequence- and translation-independent mRNA localization to the endoplasmic reticulum

Pyhtila, B. M., Zheng, T., Lager, P. J., Keene, J. D., Reedy, M. C., & Nicchitta, C. V. (2008) · RNA · doi:10.1261/rna.721108 · Cited by 141 · see citing works

The ARE‐dependent mRNA‐destabilizing activity of BRF1 is regulated by protein kinase B

Schmidlin, M., Lu, M., Leuenberger, S. A., Stoecklin, G., Mallaun, M., Gross, B., Gherzi, R., Heß, D., Hemmings, B. A., & Moroni, C. (2004) · The EMBO Journal · doi:10.1038/sj.emboj.7600477 · Cited by 138 · see citing works

AMP-activated Protein Kinase-regulated Phosphorylation and Acetylation of Importin α1

Wang, W., Yang, X., Kawai, T., de Silanes, I. L., Mazan-Mamczarz, K., Chen, P., Chook, Y. M., Quensel, C., Köhler, M., & Gorospe, M. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m409014200 · Cited by 126 · see citing works

HuR in the Mammalian Genotoxic Response: Post-Transcriptional Multitasking

Gorospe, M. (2003) · Cell Cycle · doi:10.4161/cc.2.5.491 · Cited by 121 · see citing works

Differential Phosphorylation and Subcellular Localization of La RNPs Associated with Precursor tRNAs and Translation-Related mRNAs

Intine, R. V. A., Tenenbaum, S. A., Sakulich, A. L., Keene, J. D., & Maraia, R. J. (2003) · Molecular Cell · doi:10.1016/s1097-2765(03)00429-5 · Cited by 114 · see citing works

BRF1 Protein Turnover and mRNA Decay Activity Are Regulated by Protein Kinase B at the Same Phosphorylation Sites

Benjamin, D., Schmidlin, M., Lu, M., Gross, B., & Moroni, C. (2006) · Molecular and Cellular Biology · doi:10.1128/mcb.01099-06 · Cited by 91 · see citing works

Global analysis of mRNA stability in the archaeon Sulfolobus

Andersson, A. F., Lundgren, M., Eriksson, S., Rosenlund, M., Bernander, R., & Nilsson, P. (2006) · Genome biology · doi:10.1186/gb-2006-7-10-r99 · Cited by 90 · see citing works

Identification of coexpressed gene clusters in a comparative analysis of transcriptome and proteome in mouse tissues

Mijalski, T., Harder, A., Halder, T., Kersten, M., Horsch, M., Strom, T. M., Liebscher, V., Lottspeich, F., de Angelis, M. H., & Beckers, J. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0407672102 · Cited by 88 · see citing works

Stable Ribosome Binding to the Endoplasmic Reticulum Enables Compartment-specific Regulation of mRNA Translation

Stephens, S. B., Dodd, R. D., Brewer, J. W., Lager, P. J., Keene, J. D., & Nicchitta, C. V. (2005) · Molecular Biology of the Cell · doi:10.1091/mbc.e05-07-0685 · Cited by 86 · see citing works

Phosphorylated HuR shuttles in cycles

Kim, H. H., & Gorospe, M. (2008) · Cell Cycle · doi:10.4161/cc.7.20.6884 · Cited by 84 · see citing works

Immediate early response of the circadian polyA ribonuclease nocturnin to two extracellular stimuli

Garbarino‐Pico, E., Niu, S., Rollag, M. D., Strayer, C. A., Besharse, J. C., & Green, C. B. (2007) · RNA · doi:10.1261/rna.286507 · Cited by 82 · see citing works

Book review of "The origin of sex: three billion years of genetic recombination" by Lynn Margulis and Dorion Sagan, Yale University Press, New Haven and London

Robson, S. C. (1987) · ResearchOnline - JCU (James Cook University) · Cited by 82 · see citing works

Differential Recruitment of the Splicing Machinery during Transcription Predicts Genome-Wide Patterns of mRNA Splicing

Moore, M. J., Schwartzfarb, E. M., Silver, P. A., & Yu, M. C. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.12.006 · Cited by 70 · see citing works

Identification of a set of KSRP target transcripts upregulated by PI3K-AKT signaling

Ruggiero, T., Trabucchi, M., Ponassi, M., Corte, G., Chen, C., Al‐Haj, L., Khabar, K. S. A., Briata, P., & Gherzi, R. (2007) · BMC Molecular Biology · doi:10.1186/1471-2199-8-28 · Cited by 63 · see citing works

Translation arrest and ribonomics in post‐ischemic brain: layers and layers of players

DeGracia, D. J., Jamison, J. T., Szymanski, J. J., & Lewis, M. K. (2008) · Journal of Neurochemistry · doi:10.1111/j.1471-4159.2008.05561.x · Cited by 58 · see citing works

Patterns of coordinate down-regulation of ARE-containing transcripts following immune cell activation

Raghavan, A., Dhalla, M., Bakheet, T. M., Ogilvie, R. L., Louis, I. V.-S., Khabar, K. S. A., Williams, B. R. G., & Bohjanen, P. R. (2004) · Genomics · doi:10.1016/j.ygeno.2004.08.007 · Cited by 57 · see citing works

Synthetic RNA circuits

Davidson, E. A., & Ellington, A. D. (2006) · Nature Chemical Biology · doi:10.1038/nchembio846 · Cited by 56 · see citing works

Pathways for compartmentalizing protein synthesis in eukaryotic cells: the template-partitioning model

Nicchitta, C. V., Lerner, R. S., Stephens, S. B., Dodd, R. D., & Pyhtila, B. M. (2005) · Biochemistry and Cell Biology · doi:10.1139/o05-147 · Cited by 50 · see citing works

Global Analysis of HuR-Regulated Gene Expression in Colon Cancer Systems of Reducing Complexity

de Silanes, I. L., Fan, J., Galbán, C. J., Spencer, R. G. S., Becker, K. G., & Gorospe, M. (2004) · Gene Expression · doi:10.3727/000000004783992215 · Cited by 41 · see citing works

Identification of Transformation-Related Pathways in a Breast Epithelial Cell Model Using a Ribonomics Approach

Mazan-Mamczarz, K., Hagner, P. R., Dai, B., Wood, W. H., Zhang, Y., Becker, K. G., Liu, Z., & Gartenhaus, R. B. (2008) · Cancer Research · doi:10.1158/0008-5472.can-08-2393 · Cited by 40 · see citing works

Biological Clocks and the Coordination Theory of RNA Operons and RegulonsPreprint

Keene, J. D. (2007) · Cold Spring Harbor Symposia on Quantitative Biology · doi:10.1101/sqb.2007.72.013 · Cited by 35 · see citing works

RNA-binding proteins to assess gene expression states of co-cultivated cells in response to tumor cells.

Penalva, L. O. F., Burdick, M. D., Lin, S. M., Sutterlüty, H., & Keene, J. D. (2004) · Molecular Cancer · doi:10.1186/1476-4598-3-24 · Cited by 34 · see citing works

Biological Rhythms Workshop I: Introduction to ChronobiologyPreprint

Kuhlman, S. J., Mackey, S. R., & Duffy, J. F. (2007) · Cold Spring Harbor Symposia on Quantitative Biology · doi:10.1101/sqb.2007.72.059 · Cited by 27 · see citing works

Post-transcriptional control of gene expression through subcellular relocalization of mRNA binding proteins

Cammas, A., Lewis, S. M., Vagner, S., & Holčı́k, M. (2008) · Biochemical Pharmacology · doi:10.1016/j.bcp.2008.05.022 · Cited by 25 · see citing works

Origin of the Eukaryotic Nucleus

Sandman, K., & Reeve, J. N. (1998) · Science · doi:10.1126/science.280.5363.499d · Cited by 19 · see citing works

Chromosomal Organization: Mingling with the Neighbors

Aten, J. A., & Kanaar, R. (2006) · PLoS Biology · doi:10.1371/journal.pbio.0040155 · Cited by 17 · see citing works

Integrative Regulatory Mapping Indicates that the RNA-Binding Protein HuR Couples Pre-mRNA Processing and mRNA Stability

Mukherjee, N., Corcoran, D. L., Nusbaum, J. D., Reid, D. W., Georgiev, S., Hafner, M., Ascano, M., Tuschl, T., Ohler, U., & Keene, J. D. (2011) · Molecular Cell · doi:10.1016/j.molcel.2011.06.007 · Cited by 654 · see citing works

Emerging roles of non-coding RNAs in brain evolution, development, plasticity and disease

Qureshi, I., & Mehler, M. F. (2012) · Nature reviews. Neuroscience · doi:10.1038/nrn3234 · Cited by 561 · see citing works

The ALS disease protein TDP-43 is actively transported in motor neuron axons and regulates axon outgrowth

Fallini, C., Bassell, G. J., & Rossoll, W. (2012) · Human Molecular Genetics · doi:10.1093/hmg/dds205 · Cited by 247 · see citing works

Sequence-non-specific effects of RNA interference triggers and microRNA regulators

Olejniczak, M., Galka-Marciniak, P., & Krzyżosiak, W. J. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp829 · Cited by 201 · see citing works

MacroRNA underdogs in a microRNA world: Evolutionary, regulatory, and biomedical significance of mammalian long non-protein-coding RNA

Lipovich, L., Johnson, R., & Lin, C. (2010) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2010.10.001 · Cited by 201 · see citing works

Primary Role for Endoplasmic Reticulum-bound Ribosomes in Cellular Translation Identified by Ribosome Profiling

Reid, D. W., & Nicchitta, C. V. (2011) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.312280 · Cited by 177 · see citing works

Roles of Puf proteins in mRNA degradation and translation

Miller, M. A., & Olivas, W. M. (2010) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.69 · Cited by 147 · see citing works

PRIDB: a protein-RNA interface database

Lewis, B. A., Walia, R. R., Terribilini, M., Ferguson, J., Zheng, C. Y., Honavar, V., & Dobbs, D. L. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq1108 · Cited by 147 · see citing works

Mechanisms coordinating ELAV/Hu mRNA regulons

Simone, L. E., & Keene, J. D. (2013) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2012.12.006 · Cited by 143 · see citing works

Widespread uncoupling between transcriptome and translatome variations after a stimulus in mammalian cells

Tebaldi, T., Re, A., Viero, G., Pegoretti, I., Passerini, A., Blanzieri, E., & Quattrone, A. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-220 · Cited by 131 · see citing works

Emerging complexity of the HuD/ELAVl4 gene; implications for neuronal development, function, and dysfunction

Bronicki, L. M., & Jasmin, B. J. (2013) · RNA · doi:10.1261/rna.039164.113 · Cited by 126 · see citing works

Neuron-specific ELAV/Hu proteins suppress HuR mRNA during neuronal differentiation by alternative polyadenylation

Mansfield, K. D., & Keene, J. D. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr1114 · Cited by 112 · see citing works

Systematic analysis of posttranscriptional gene expression

Morris, A. R., Mukherjee, N., & Keene, J. D. (2009) · WIREs Systems Biology and Medicine · doi:10.1002/wsbm.54 · Cited by 109 · see citing works

N 6 -methyladenosine is required for the hypoxic stabilization of specific mRNAs

Fry, N. J., Law, B. A., Ilkayeva, O., Holley, C. L., & Mansfield, K. D. (2017) · RNA · doi:10.1261/rna.061044.117 · Cited by 110 · see citing works

MicroRNAs in rheumatoid arthritis

Ceribelli, A., Nahid, M. A., Satoh, M., & Chan, E. K. L. (2011) · FEBS Letters · doi:10.1016/j.febslet.2011.05.020 · Cited by 104 · see citing works

Cytoplasmic ribonucleoprotein (RNP) bodies and their relationship to GW/P bodies

Moser, J. J., & Fritzler, M. J. (2009) · The International Journal of Biochemistry & Cell Biology · doi:10.1016/j.biocel.2009.11.018 · Cited by 97 · see citing works

Post-transcriptional RNA regulons affecting cell cycle and proliferation

Blackinton, J. G., & Keene, J. D. (2014) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2014.05.014 · Cited by 95 · see citing works

Minireview: Global Regulation and Dynamics of Ribonucleic Acid

Keene, J. D. (2010) · Endocrinology · doi:10.1210/en.2009-1250 · Cited by 90 · see citing works

RNA–protein analysis using a conditional CRISPR nuclease

Lee, H., Haurwitz, R. E., Apffel, A., Zhou, K., Smart, B., Wenger, C. D., Laderman, S. S., Bruhn, L., & Doudna, J. A. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1302807110 · Cited by 89 · see citing works

MicroRNAs and autoimmunity

Ceribelli, A., Satoh, M., & Chan, E. K. L. (2012) · Current Opinion in Immunology · doi:10.1016/j.coi.2012.07.011 · Cited by 86 · see citing works

Regulation of non-coding RNA networks in the nervous system—What's the REST of the story?

Qureshi, I., & Mehler, M. F. (2009) · Neuroscience Letters · doi:10.1016/j.neulet.2009.07.093 · Cited by 85 · see citing works

Coordinated posttranscriptional mRNA population dynamics during T‐cell activation

Mukherjee, N., Lager, P. J., Friedersdorf, M. B., Thompson, M. A., & Keene, J. D. (2009) · Molecular Systems Biology · doi:10.1038/msb.2009.44 · Cited by 86 · see citing works

Mechanisms governing the control of mRNA translation

Livingstone, M., Atas, E., Meller, A., & Sonenberg, N. (2010) · Physical Biology · doi:10.1088/1478-3975/7/2/021001 · Cited by 85 · see citing works

Aiding and abetting cancer: mRNA export and the nuclear pore

Čuljković, B., & Borden, K. L. B. (2013) · Trends in Cell Biology · doi:10.1016/j.tcb.2013.03.004 · Cited by 79 · see citing works

Coordinate regulation of mRNA decay networks by GU-rich elements and CELF1

Louis, I. V.-S., & Bohjanen, P. R. (2011) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2011.03.002 · Cited by 73 · see citing works

ELAV proteins along evolution: Back to the nucleus?

Colombrita, C., Silani, V., & Ratti, A. (2013) · Molecular and Cellular Neuroscience · doi:10.1016/j.mcn.2013.02.003 · Cited by 69 · see citing works

Local translation of TC10 is required for membrane expansion during axon outgrowth

Gracias, N. G., Shirkey, N. J., & Hengst, U. (2014) · Nature Communications · doi:10.1038/ncomms4506 · Cited by 58 · see citing works

Ribosome-associated ncRNAs: An emerging class of translation regulators

Pircher, A., Gebetsberger, J., & Polacek, N. (2014) · RNA Biology · doi:10.1080/15476286.2014.996459 · Cited by 57 · see citing works

A nonredundant structure dataset for benchmarking protein‐RNA computational docking

Huang, S., & Zou, X. (2012) · Journal of Computational Chemistry · doi:10.1002/jcc.23149 · Cited by 57 · see citing works

Rapid Cross-Linking of an RNA Internal Loop by the Anticancer Drug Cisplatin

Hostetter, A. A., Chapman, E. G., & DeRose, V. J. (2009) · Journal of the American Chemical Society · doi:10.1021/ja809637e · Cited by 54 · see citing works

The Architecture of the Human RNA-Binding Protein Regulatory Network

Quattrone, A., & Dassi, E. (2019) · iScience · doi:10.1016/j.isci.2019.10.058 · Cited by 53 · see citing works

Highly accessible AU-rich regions in 3’ untranslated regions are hotspots for binding of regulatory factors

Plass, M., Rasmussen, S. H., & Krogh, A. (2017) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1005460 · Cited by 51 · see citing works

The influence of microRNAs and poly(A) tail length on endogenous mRNA–protein complexes

Rissland, O. S., Subtelny, A. O., Wang, M., Lugowski, A., Nicholson, B. L., Laver, J. D., Sidhu, S. S., Smibert, C. A., Lipshitz, H. D., & Bartel, D. P. (2017) · Genome biology · doi:10.1186/s13059-017-1330-z · Cited by 48 · see citing works

Post-Transcriptional Regulation of Cytokine Signaling by AU-Rich and GU-Rich Elements

Louis, I. V.-S., & Bohjanen, P. R. (2014) · Journal of Interferon & Cytokine Research · doi:10.1089/jir.2013.0108 · Cited by 44 · see citing works

The Emerging Role of Epigenetics in Stroke

Qureshi, I., & Mehler, M. F. (2010) · Archives of Neurology · doi:10.1001/archneurol.2010.300 · Cited by 44 · see citing works

Ribonomic approaches to study the RNA‐binding proteome

Faoro, C., & Ataide, S. F. (2014) · FEBS Letters · doi:10.1016/j.febslet.2014.07.039 · Cited by 44 · see citing works

Single and Combined Methods to Specifically or Bulk-Purify RNA–Protein Complexes

Ende, R. V., Balzarini, S., & Geuten, K. P. (2020) · Biomolecules · doi:10.3390/biom10081160 · Cited by 41 · see citing works

Targeting Axonal Protein Synthesis in Neuroregeneration and Degeneration

Baleriola, J., & Hengst, U. (2014) · Neurotherapeutics · doi:10.1007/s13311-014-0308-8 · Cited by 37 · see citing works

Hu Antigen R (HuR) Is a Positive Regulator of the RNA-binding Proteins TDP-43 and FUS/TLS

Lu, L., Zheng, L., Si, Y., Luo, W., Dujardin, G., Kwan, T., Potochick, N. R., Thompson, S. R., Schneider, D. A., & King, P. H. (2014) · Journal of Biological Chemistry · doi:10.1074/jbc.m114.573246 · Cited by 37 · see citing works

Yeast Cth2 protein represses the translation of ARE-containing mRNAs in response to iron deficiency

Ramos-Alonso, L., Romero, A. M., Soler, M. À., Perea‐García, A., Alepuz, P. M., Puig, S., & Martínez‐Pastor, M. T. (2018) · PLoS Genetics · doi:10.1371/journal.pgen.1007476 · Cited by 34 · see citing works

Genome-wide analysis of 3′-untranslated regions supports the existence of post-transcriptional regulons controlling gene expression in trypanosomes

Gaudenzi, J. G. D., Carmona, S. J., Agüero, F., & Frasch, A. C. C. (2013) · PeerJ · doi:10.7717/peerj.118 · Cited by 33 · see citing works

Single nucleotide polymorphisms affect RNA-protein interactions at a distance through modulation of RNA secondary structures

Shatoff, E., & Bundschuh, R. A. (2020) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1007852 · Cited by 35 · see citing works

Scp160p is required for translational efficiency of codon-optimized mRNAs in yeast

Hirschmann, W. D., Westendorf, H., Mayer, A., Cannarozzi, G. M., Cramer, P., & Jansen, R. (2014) · Nucleic Acids Research · doi:10.1093/nar/gkt1392 · Cited by 31 · see citing works

Functional coordination and HuR-mediated regulation of mRNA stability during T cell activation

Blackinton, J. G., & Keene, J. D. (2015) · Nucleic Acids Research · doi:10.1093/nar/gkv1066 · Cited by 31 · see citing works

Endogenous LINE-1 (Long Interspersed Nuclear Element-1) Reverse Transcriptase Activity in Platelets Controls Translational Events Through RNA–DNA Hybrids

Schwertz, H., Rowley, J. W., Schumann, G. G., Thorack, U., Campbell, R. A., Manne, B. K., Zimmerman, G. A., Weyrich, A. S., & Rondina, M. T. (2018) · Arteriosclerosis Thrombosis and Vascular Biology · doi:10.1161/atvbaha.117.310552 · Cited by 31 · see citing works

A 43-Nucleotide U-rich Element in 3′-Untranslated Region of Large Number of Trypanosoma cruzi Transcripts Is Important for mRNA Abundance in Intracellular Amastigotes

Li, Z., Gaudenzi, J. G. D., Álvarez, V. E., Mendiondo, N., Wang, H., Kissinger, J. C., Frasch, A. C. C., & Docampo, R. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.338699 · Cited by 29 · see citing works

Translation regulation by ribosomes: Increased complexity and expanded scope

Mauro, V. P., & Matsuda, D. (2015) · RNA Biology · doi:10.1080/15476286.2015.1107701 · Cited by 28 · see citing works

Toponomics: studying protein–protein interactions and protein networks in intact tissue

Pierre, S. C., & Scholich, K. (2010) · Molecular BioSystems · doi:10.1039/b910653g · Cited by 28 · see citing works

Functional genomics of human brain development and implications for autism spectrum disorders

Ziats, M. N., Grosvenor, L. P., & Rennert, O. M. (2015) · Translational Psychiatry · doi:10.1038/tp.2015.153 · Cited by 26 · see citing works

Relationship of Other Cytoplasmic Ribonucleoprotein Bodies (cRNPB) to GW/P Bodies

Moser, J. J., & Fritzler, M. J. (2012) · Advances in experimental medicine and biology · doi:10.1007/978-1-4614-5107-5_13 · Cited by 27 · see citing works

Circuitry of mRNA regulation

Kanitz, A., & Gerber, A. P. (2009) · WIREs Systems Biology and Medicine · doi:10.1002/wsbm.55 · Cited by 26 · see citing works

Impact of nuclear organization and dynamics on epigenetic regulation in the central nervous system: implications for neurological disease states

Qureshi, I., & Mehler, M. F. (2010) · Annals of the New York Academy of Sciences · doi:10.1111/j.1749-6632.2010.05718.x · Cited by 23 · see citing works

Hypoxic stabilization of mRNA is HIF-independent but requires mtROS

Fortenbery, G. W., Sarathy, B., Carraway, K., & Mansfield, K. D. (2018) · Cellular & Molecular Biology Letters · doi:10.1186/s11658-018-0112-2 · Cited by 21 · see citing works

Nuclear PKM2 binds pre-mRNA at folded G-quadruplexes and reveals their gene regulatory role

Anastasakis, D. G., Apostolidi, M., Garman, K. A., Polash, A. H., Umar, M. I., Meng, Q., Scutenaire, J., Jarvis, J. E., Wang, X., Haase, A. D. D., et al. (2024) · Molecular Cell · doi:10.1016/j.molcel.2024.07.025 · Cited by 20 · see citing works

Extremely low-frequency electromagnetic field (EMF) generates alterations in the synthesis and secretion of oestradiol-17 β (E 2 ) in uterine tissues: An in vitro study

Koziorowska, A. M., Drzewiecka, E. M., Romerowicz‐Misielak, M., Zglejc‐Waszak, K., & Franczak, A. (2018) · Theriogenology · doi:10.1016/j.theriogenology.2017.12.041 · Cited by 20 · see citing works

The Effects of Single Nucleotide Polymorphisms in Cancer RNAi Therapies

Gebert, M., Jaśkiewicz, M., Moszyńska, A., Collawn, J. F., & Bartoszewski, R. (2020) · Cancers · doi:10.3390/cancers12113119 · Cited by 20 · see citing works

Molecular characterization of the Trypanosoma cruzi specific RNA binding protein TcRBP40 and its associated mRNAs

Guerra-Slompo, E. P., Probst, C., Pavoni, D. P., Goldenberg, S., Krieger, M. A., & Dallagiovanna, B. (2012) · Biochemical and Biophysical Research Communications · doi:10.1016/j.bbrc.2012.02.154 · Cited by 18 · see citing works

Hypoxia and Hypoglycemia synergistically regulate mRNA stability

Carraway, K., Johnson, E. M., Kauffmann, T. C., Fry, N. J., & Mansfield, K. D. (2017) · RNA Biology · doi:10.1080/15476286.2017.1311456 · Cited by 18 · see citing works

The RNA-binding protein TcUBP1 up-regulates an RNA regulon for a cell surface–associated Trypanosoma cruzi glycoprotein and promotes parasite infectivity

Sabalette, K. B., Romaniuk, M. A., Noé, G., Cassola, A., Campo, V. A., & Gaudenzi, J. G. D. (2019) · Journal of Biological Chemistry · doi:10.1074/jbc.ra118.007123 · Cited by 18 · see citing works

Setting the Stage: The First Round of Spermatogenesis

Geyer, C. B. (2017) · Springer eBooks · doi:10.1007/978-1-4939-7505-1_3 · Cited by 18 · see citing works

The Post-transcriptional Operon

Tenenbaum, S. A., Christiansen, J., & Nielsen, H. (2010) · Methods in molecular biology · doi:10.1007/978-1-59745-248-9_16 · Cited by 16 · see citing works

HuR's role in gemcitabine efficacy: an exception or opportunity?

Brody, J. R., & Gonye, G. E. (2010) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.62 · Cited by 15 · see citing works

Ribosome-Associated ncRNAs (rancRNAs) Adjust Translation and Shape Proteomes

Pecoraro, V., Rosina, A., & Polacek, N. (2022) · Non-Coding RNA · doi:10.3390/ncrna8020022 · Cited by 13 · see citing works

Snf1-Dependent Transcription Confers Glucose-Induced Decay upon the mRNA Product

Braun, K. A., Dombek, K. M., & Young, E. T. (2015) · Molecular and Cellular Biology · doi:10.1128/mcb.00436-15 · Cited by 13 · see citing works

Insights into the Regulation of mRNA Processing of Polycistronic Transcripts Mediated by DRBD 4/ PTB 2, a Trypanosome Homolog of the Polypyrimidine Tract‐Binding Protein

Gaudenzi, J. G. D., Jäger, A. V., Izcovich, R., & Campo, V. A. (2015) · Journal of Eukaryotic Microbiology · doi:10.1111/jeu.12288 · Cited by 13 · see citing works

Emerging Molecular Targets for Brain Repair after Stroke

Krupiński, J., & SLEVIN, M. A. (2013) · Stroke Research and Treatment · doi:10.1155/2013/473416 · Cited by 13 · see citing works

Evolution of the Neocortex Through RNA-Binding Proteins and Post-transcriptional Regulation

Salamon, I., & Rašin, M. (2022) · Frontiers in Neuroscience · doi:10.3389/fnins.2021.803107 · Cited by 11 · see citing works

The RNA-Binding Protein Human Antigen R Controls Global Changes in Gene Expression during Schwann Cell Development

Iruarrizaga‐Lejarreta, M., Varela‐Rey, M., Lozano, J. J., Fernández‐Ramos, D., Rodríguez‐Ezpeleta, N., Embade, N., Lu, S. C.-L., van der Kraan, P. M., Davidson, E. N. B., Gorospe, M., et al. (2012) · Journal of Neuroscience · doi:10.1523/jneurosci.5868-11.2012 · Cited by 12 · see citing works

Proteomics-Based Characterization of miR-574-5p Decoy to CUGBP1 Suggests Specificity for mPGES-1 Regulation in Human Lung Cancer Cells

Emmerich, A. C., Wellstein, J., Ossipova, E., Baumann, I., Lengqvist, J., Kultima, K., Jakobsson, P., Steinhilber, D., & Saul, M. J. (2020) · Frontiers in Pharmacology · doi:10.3389/fphar.2020.00196 · Cited by 12 · see citing works

Insulin-like growth factor-binding protein-7 (IGFBP7) transcript: A-to-I editing events in normal and cancerous human keratinocytes

Hochberg, M., Gilead, L., Markel, G., Nemlich, Y., Feiler, Y., Enk, C. D., Denichenko, P., Karni, R., & Ingber, A. (2013) · Archives of Dermatological Research · doi:10.1007/s00403-013-1338-5 · Cited by 11 · see citing works

Constant Splice-Isoform Ratios in Human Lymphoblastoid Cells Support the Concept of a Splico-Stat

Kramer, M., Huse, K., Menzel, U., Backhaus, O., Rosenstiel, P. C., Schreiber, S., Hampe, J., & Platzer, M. (2011) · Genetics · doi:10.1534/genetics.110.125096 · Cited by 10 · see citing works

CELF1, a Multifunctional Regulator of Posttranscriptional Networks

Beisang, D. J., Paul, R., & Louis, I. V.-S. (2012) · InTech eBooks · doi:10.5772/48780 · Cited by 10 · see citing works

Ras Post-transcriptionally Enhances a Pre-malignantly Primed EMT to Promote Invasion

Bisogno, L. S., Friedersdorf, M. B., & Keene, J. D. (2018) · iScience · doi:10.1016/j.isci.2018.05.011 · Cited by 9 · see citing works

KSRP silencing favors neural differentiation of P19 teratocarcinoma cells

Giovarelli, M., Bucci, G., Pasero, M., Gherzi, R., & Briata, P. (2013) · Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms · doi:10.1016/j.bbagrm.2013.02.008 · Cited by 8 · see citing works

Analysis of post-transcriptional regulation during cancer progression using a donor-derived isogenic model of tumorigenesis

Bisogno, L. S., & Keene, J. D. (2017) · Methods · doi:10.1016/j.ymeth.2017.05.012 · Cited by 7 · see citing works

MINA-1 and WAGO-4 are part of regulatory network coordinating germ cell death and RNAi in C. elegans

Sendoel, A., Šubašić, D., Ducoli, L., Keller, M., Michel, E., Köhler, I., Singh, K. D., Zheng, X., Brümmer, A., Imig, J., et al. (2019) · Cell Death and Differentiation · doi:10.1038/s41418-019-0291-z · Cited by 6 · see citing works

Emerging Themes in Epigenetics: Implications for Understanding and Treating Nervous System Disorders

Qureshi, I., & Mehler, M. F. (2010) · Epigenomics · doi:10.2217/epi.10.17 · Cited by 6 · see citing works

Modular protein-RNA interactions regulating mRNA metabolism: a role for NMR

Cukier, C. D., & Ramos, A. (2011) · European Biophysics Journal · doi:10.1007/s00249-011-0698-z · Cited by 6 · see citing works

Secondary and Tertiary Endosymbiosis and Kleptoplasty

Gross, J., Bhattacharya, D., Pelletreau, K. N., Rumpho, M. E., & Reyes‐Prieto, A. (2012) · Advances in photosynthesis and respiration · doi:10.1007/978-94-007-2920-9_2 · Cited by 5 · see citing works

Mass Spectrometry-Based Proteomics Identifies UPF1 as a Critical Gene Expression Regulator in MonoMac 6 Cells

Ochs, M. J., Ossipova, E., Oliynyk, G., Steinhilber, D., Suess, B., & Jakobsson, P. (2013) · Journal of Proteome Research · doi:10.1021/pr301193f · Cited by 4 · see citing works

Interplay between single-stranded binding proteins on RNA secondary structure

Lin, Y., & Bundschuh, R. A. (2013) · Physical Review E · doi:10.1103/physreve.88.052707 · Cited by 4 · see citing works

Decoding the functions of post‐transcriptional regulators in the determination of inflammatory states: focus on macrophage activation

Kafasla, P., Karakasiliοtis, I., & Kontoyiannis, D. L. (2012) · WIREs Systems Biology and Medicine · doi:10.1002/wsbm.1179 · Cited by 3 · see citing works

Post-transcriptional Regulation of Cytokine Signaling During Inflammatory Responses

Louis, I. V.-S., & Bohjanen, P. R. (2015) · Springer eBooks · doi:10.1007/978-3-319-25124-0_3 · Cited by 3 · see citing works

Bradycardia, hypotension and bronchospasm following remifentanil-propofol in a myathenic paitent treated by pyridostigmine--a case report.

Nauphal, M., & Baraka, A. (2008) · PubMed · Cited by 3 · see citing works

mRNA Export and Its Dysregulation in Disease

Borden, K. L. B., & Culjkovic‐Kraljacic, B. (2018) · Nucleic acids and molecular biology · doi:10.1007/978-3-319-77309-4_8 · Cited by 3 · see citing works

PAR-CLIP: A Genomic Technique to Dissect RNA-Protein Interactions

Dutka, T., Sarshad, A. A., & Hafner, M. (2016) · Springer eBooks · doi:10.1007/978-3-319-31350-4_11 · Cited by 2 · see citing works

Nuclear PKM2 Promotes Pre-mRNA Processing by Binding G-QuadruplexesPreprint

Anastasakis, D. G., Apostolidi, M., Rinehart, J., & Hafner, M. (2021) · SSRN Electronic Journal · doi:10.2139/ssrn.3942850 · Cited by 2 · see citing works

Mechanisms of persistent translation arrest following global brain ischemia & reperfusion

Jamison, J. T. (2011) · Cited by 1 · see citing works

Foci of Future Studies on Abiotic Stress Tolerance of Maize in the Era of Post-Genomics

Li, Y., Fan, X., & Jiang-xiong, L. I. A. O. (2012) · Journal of Integrative Agriculture · doi:10.1016/s2095-3119(12)60120-8 · Cited by 1 · see citing works

Le monde complexe et mouvant des ARN. Première partie

Lamoril, J., Ameziane, N., Deybach, J., Bouizegarène, P., & Bogard, M. (2010) · Immuno-analyse & Biologie Spécialisée · doi:10.1016/j.immbio.2010.01.002 · Cited by 1 · see citing works

Peer Review #2 of "Genome-wide analysis of 3′-untranslated regions supports the existence of post-transcriptional regulons controlling gene expression in trypanosomes (v0.1)"

(2013) · PeerJ · doi:10.7287/peerj.118v0.1/reviews/2 · Cited by 1 · see citing works

Segregation of Protein Synthesis Between the Cytoplasm and Endoplasmic Reticulum of Eukaryotic Cells

Reid, D. W. (2014) · DukeSpace (Duke University)

Characterization of GW/P Body Components in Astrocyte and Astrocytoma Cells

Moser, J. J. (2013) · Libraries and Cultural Resources (University of Calgary) · doi:10.11575/prism/25275

Studies on TERRA : telomeric repeat containing RNA

Basu, R. (2015) · doi:10.32657/10356/62529

THE ROLE OF N6-METHYLADENOSINE IN HYPOXIA AND CELLULAR TRANSFORMATION

Fry, N. J. (2017) · The Scholarship East Carolina University's Institutional Repository (East Carolina University)

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Olejniczak, M., Galka-Marciniak, P., & Krzyżosiak, W. J. (2009)

Posttranscriptional Gene Regulation: From Global Models to Functional Mechanisms

Thompson, M. A. (2014) · DukeSpace (Duke University)

References

(2012) · doi:10.1002/9783527644506.refs

Nuclear PKM2 promotes pre-mRNA processing by binding folded RNA G-quadruplexesPreprint

Anastasakis, D. G., Apostolidi, M., Rinehart, J., & Hafner, M. (2022) · Research Square · doi:10.21203/rs.3.rs-1495021/v1

Peer Review #1 of "Genome-wide analysis of 3′-untranslated regions supports the existence of post-transcriptional regulons controlling gene expression in trypanosomes (v0.1)"

(2013) · PeerJ · doi:10.7287/peerj.118v0.1/reviews/1

Systematic analysis of posttranscriptional gene expression

Morris, A. R., Mukherjee, N., & Keene, J. D. (2009) · WIREs Systems Biology and Medicine · doi:10.1002/wsbm.54 · Cited by 109 · see citing works

RNA regulons: coordination of post-transcriptional events

Keene, J. D. (2007) · Nature Reviews Genetics · doi:10.1038/nrg2111 · Cited by 1,321 · see citing works

Post-transcriptional operons and regulons co-ordinating gene expression

Keene, J. D., & Lager, P. J. (2005) · Chromosome Research · doi:10.1007/s10577-005-0848-1 · Cited by 123 · see citing works

PJ: Post-transcriptional operons and regulons co-ordinating gene expression

Keene, J. D., Lager, P. J., Ok, Q. A., Required, Q. A., Missing, Q. A. L., Keene, J. D., & Lager, P. J. (2013)

RNA-binding proteins and neural development: a matter of targets and complexes

Agnès, F., & Perron, M. (2004) · Neuroreport · doi:10.1097/00001756-200412030-00001 · Cited by 17 · see citing works