Gene expression regulation in trypanosomatids
Abstract
Trypanosomatids are protozoan micro-organisms that cause serious health problems in humans and domestic animals. In addition to their medical relevance, these pathogens have novel biological structures and processes. From nuclear DNA transcription to mRNA translation, trypanosomes use unusual mechanisms to control gene expression. For example, transcription by RNAPII (RNA polymerase II) is polycistronic, and only a few transcription initiation sites have been identified so far. The sequences present in the polycistronic units code for proteins having unrelated functions, that is, not involved in a similar metabolic pathway. Owing to these biological constraints, these micro-organisms regulate gene expression mostly by post-transcriptional events. Consequently, the function of proteins that recognize RNA elements preferentially at the 3′ UTR (untranslated region) of transcripts is central. It was recently shown that mRNP (messenger ribonucleoprotein) complexes are organized within post-transcriptional operons to co-ordinately regulate gene expression of functionally linked transcripts. In the present chapter we will focus on particular characteristics of gene expression in the so-called TriTryp parasites: Trypanosoma cruzi, Trypanosoma brucei and Leishmania major.
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There are almost no data on the sequence preferences of RBPs in most organisms.
“There are virtually no data on the sequence preferences of RBPs in most organisms”
From A compendium of RNA-binding motifs for decoding gene regulation (2013) · cites this paper as [6]
Cites
The Genome of the African Trypanosome Trypanosoma brucei
Berriman, M., Ghedin, E., Hertz‐Fowler, C., Blandin, G., Renauld, H., Bartholomeu, D. C., Lennard, N. J., Caler, E. V., Hamlin, N. E., Haas, B. J., et al. (2005) · Science · doi:10.1126/science.1112642 · Cited by 1,634 · see citing works
The Genome Sequence of Trypanosoma cruzi , Etiologic Agent of Chagas Disease
El-Sayed, N. M., Myler, P. J., Bartholomeu, D. C., Nilsson, D., Aggarwal, G., Tran, A.-N., Ghedin, E., Worthey, E. A., Delcher, A. L., Blandin, G., et al. (2005) · Science · doi:10.1126/science.1112631 · Cited by 1,394 · see citing works
Self-citationThe Genome of the Kinetoplastid Parasite, Leishmania major
Ivens, A. C., Peacock, C. S., Worthey, E. A., Murphy, L., Aggarwal, G., Berriman, M., Sisk, E. C., Rajandream, M., Adlem, E., Aert, R., et al. (2005) · Science · doi:10.1126/science.1112680 · Cited by 1,347 · see citing works
Self-citationRNA regulons: coordination of post-transcriptional events
Keene, J. D. (2007) · Nature Reviews Genetics · doi:10.1038/nrg2111 · Cited by 1,321 · see citing works
Comparative Genomics of Trypanosomatid Parasitic Protozoa
El-Sayed, N. M., Myler, P. J., Blandin, G., Berriman, M., Crabtree, J., Aggarwal, G., Caler, E. V., Renauld, H., Worthey, E. A., Hertz‐Fowler, C., et al. (2005) · Science · doi:10.1126/science.1112181 · Cited by 818 · see citing works
Barrett, M. P., Burchmore, R., Stich, A., Lázzari, J. O., Frasch, A. C. C., Cazzulo, J. J., & Krishna, S. (2003) · The Lancet · doi:10.1016/s0140-6736(03)14694-6 · Cited by 673 · see citing works
Self-citationPost-transcriptional regulation of gene expression in trypanosomes and leishmanias
CLAYTON, C. E., & Shapira, M. (2007) · Molecular and Biochemical Parasitology · doi:10.1016/j.molbiopara.2007.07.007 · Cited by 414 · see citing works
The Control of mRNA Decapping and P-Body Formation
Franks, T. M., & Lykke‐Andersen, J. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.11.001 · Cited by 399 · see citing works
Polysomes, P bodies and stress granules: states and fates of eukaryotic mRNAs
Balagopal, V., & Parker, R. (2009) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2009.03.005 · Cited by 391 · see citing works
Complex management: RNA editing in trypanosomes
Stuart, K. D., Schnaufer, A. C., Ernst, N. L., & Panigrahi, A. K. (2005) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2004.12.006 · Cited by 367 · see citing works
trans and cis Splicing in Trypanosomatids: Mechanism, Factors, and Regulation
Liang, X., Haritan, A., Uliel, S., & Michaeli, S. (2003) · Eukaryotic Cell · doi:10.1128/ec.2.5.830-840.2003 · Cited by 326 · see citing works
RNA interference in protozoan parasites
Ullu, E., Tschudi, C., & Chakraborty, T. (2004) · Cellular Microbiology · doi:10.1111/j.1462-5822.2004.00399.x · Cited by 294 · see citing works
Siegel, T. N., Hekstra, D. R., Wang, X., Dewell, S. B., & Cross, G. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq237 · Cited by 280 · see citing works
The Transcriptome of the Human Pathogen Trypanosoma brucei at Single-Nucleotide Resolution
Kolev, N. G., Franklin, J. B., Carmi, S., Shi, H., Michaeli, S., & Tschudi, C. (2010) · PLoS Pathogens · doi:10.1371/journal.ppat.1001090 · Cited by 256 · see citing works
The Genome of the African Trypanosome
Donelson, J. E. (2005) · Kluwer Academic Publishers eBooks · doi:10.1007/0-306-46894-8_11 · Cited by 239 · see citing works
Retention and Loss of RNA Interference Pathways in Trypanosomatid Protozoans
Lye, L., Owens, K. L., Shi, H., Murta, S. M. F., Vieira, A. C., Turco, S. J., Tschudi, C., Ullu, E., & Beverley, S. M. (2010) · PLoS Pathogens · doi:10.1371/journal.ppat.1001161 · Cited by 229 · see citing works
Developmental regulation of gene expression in trypanosomatid parasitic protozoa
Haile, S., & Papadopoulou, B. (2007) · Current Opinion in Microbiology · doi:10.1016/j.mib.2007.10.001 · Cited by 222 · see citing works
Switching trypanosome coats: what's in the wardrobe?
Taylor, J. W., & Rudenko, G. (2006) · Trends in Genetics · doi:10.1016/j.tig.2006.08.003 · Cited by 193 · see citing works
Nilsson, D., Gunasekera, K., Mani, J., Østerås, M., Farinelli, L., Bærlocher, L., Roditi, I. J., & Ochsenreiter, T. (2010) · PLoS Pathogens · doi:10.1371/journal.ppat.1001037 · Cited by 183 · see citing works
Krämer, S., Queiroz, R., Ellis, L., Webb, H., Hoheisel, J. D., CLAYTON, C. E., & Carrington, M. (2008) · Journal of Cell Science · doi:10.1242/jcs.031823 · Cited by 160 · see citing works
Furger, A., Schürch, N., Kurath, U., & Roditi, I. J. (1997) · Molecular and Cellular Biology · doi:10.1128/mcb.17.8.4372 · Cited by 154 · see citing works
Rochette, A., Raymond, F., Ubeda, J.-M., Smith, M. A., Messier, N., Boisvert, S., Rigault, P., Corbeil, J., Ouellette, M., & Papadopoulou, B. (2008) · BMC Genomics · doi:10.1186/1471-2164-9-255 · Cited by 143 · see citing works
Noia, J. M. D., D’Orso, I., Sánchez, D. O., & Frasch, A. C. C. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.275.14.10218 · Cited by 134 · see citing works
Self-citationThe steady-state transcriptome of the four major life-cycle stages of Trypanosoma cruzi
Minning, T. A., Weatherly, D. B., Atwood, J., Orlando, R., & Tarleton, R. L. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-370 · Cited by 133 · see citing works
RNA-Binding Domain Proteins in Kinetoplastids: a Comparative Analysis
Gaudenzi, J. G. D., Frasch, A. C. C., & CLAYTON, C. E. (2005) · Eukaryotic Cell · doi:10.1128/ec.4.12.2106-2114.2005 · Cited by 131 · see citing works
Self-citationRecruitment of mRNAs to cytoplasmic ribonucleoprotein granules in trypanosomes
Cassola, A., Gaudenzi, J. G. D., & Frasch, A. C. C. (2007) · Molecular Microbiology · doi:10.1111/j.1365-2958.2007.05833.x · Cited by 129 · see citing works
Self-citationGene transcription in trypanosomes
Palenchar, J. B., & Bellofatto, V. (2006) · Molecular and Biochemical Parasitology · doi:10.1016/j.molbiopara.2005.12.008 · Cited by 129 · see citing works
Chromosome level assembly of the hybrid Trypanosoma cruzi genome
Weatherly, D. B., Boehlke, C., & Tarleton, R. L. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-255 · Cited by 126 · see citing works
Epigenetic regulation in African trypanosomes: a new kid on the block
Figueiredo, L. M., Cross, G., & Janzen, C. J. (2009) · Nature Reviews Microbiology · doi:10.1038/nrmicro2149 · Cited by 119 · see citing works
Krämer, S., Kimblin, N., & Carrington, M. (2010) · BMC Genomics · doi:10.1186/1471-2164-11-283 · Cited by 118 · see citing works
Bringaud, F., Müller-McNicoll, M., Cerqueira, G. C., Smith, M. A., Rochette, A., El-Sayed, N. M., Papadopoulou, B., & Ghedin, E. (2007) · PLoS Pathogens · doi:10.1371/journal.ppat.0030136 · Cited by 112 · see citing works
Unravelling the procyclin coat of Trypanosoma brucei
Roditi, I. J. (1998) · Molecular and Biochemical Parasitology · doi:10.1016/s0166-6851(97)00195-3 · Cited by 108 · see citing works
Moya, S. M. F., & Estévez, A. M. (2010) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.6 · Cited by 84 · see citing works
Walrad, P. B., Paterou, A., Acosta-Serrano, Á., & Matthews, K. R. (2009) · PLoS Pathogens · doi:10.1371/journal.ppat.1000317 · Cited by 81 · see citing works
D’Orso, I., & Frasch, A. C. C. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m102120200 · Cited by 74 · see citing works
Self-citationRepetitive Elements in Genomes of Parasitic Protozoa
Wickstead, B., Ersfeld, K., & Keith Gull, B. (2003) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.67.3.360-375.2003 · Cited by 74 · see citing works
Mobile genetic elements in protozoan parasites
Bhattacharya, S., Bakre, A. A., & Bhattacharya, A. (2002) · Journal of Genetics · doi:10.1007/bf02715903 · Cited by 61 · see citing works
Coordinated gene expression by post-transcriptional regulons in African trypanosomes
Ouellette, M., & Papadopoulou, B. (2009) · Journal of Biology · doi:10.1186/jbiol203 · Cited by 60 · see citing works
Ruan, J., Arhin, G. K., Ullu, E., & Tschudi, C. (2004) · Molecular and Cellular Biology · doi:10.1128/mcb.24.21.9610-9618.2004 · Cited by 58 · see citing works
Changes in polysome profiles accompany trypanosome development
Brecht, M., & Parsons, M. (1998) · Molecular and Biochemical Parasitology · doi:10.1016/s0166-6851(98)00151-0 · Cited by 57 · see citing works
mRNA maturation by two-step trans-splicing/polyadenylation processing in trypanosomes
Jäger, A. V., Gaudenzi, J. G. D., Cassola, A., D’Orso, I., & Frasch, A. C. C. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0611125104 · Cited by 55 · see citing works
Self-citationDroll, D., Archer, S. K., Fenn, K., Delhi, P., Matthews, K. R., & CLAYTON, C. E. (2010) · FEBS Letters · doi:10.1016/j.febslet.2010.02.018 · Cited by 54 · see citing works
RNA-binding proteins and mRNA turnover in trypanosomes
D’Orso, I., Gaudenzi, J. G. D., & Frasch, A. C. C. (2003) · Trends in Parasitology · doi:10.1016/s1471-4922(03)00035-7 · Cited by 54 · see citing works
Self-citationGaudenzi, J. G. D., D’Orso, I., & Frasch, A. C. C. (2003) · Journal of Biological Chemistry · doi:10.1074/jbc.m301756200 · Cited by 52 · see citing works
Self-citationNoé, G., Gaudenzi, J. G. D., & Frasch, A. C. C. (2008) · BMC Molecular Biology · doi:10.1186/1471-2199-9-107 · Cited by 51 · see citing works
Self-citationBorst, P. (1991) · Trends in Genetics · doi:10.1016/0168-9525(91)90374-y · Cited by 48 · see citing works
Milone, J. (2002) · Nucleic Acids Research · doi:10.1093/nar/gkf521 · Cited by 39 · see citing works
Borst, P. (1991) · Trends in Genetics · doi:10.1016/0168-9525(91)90091-4 · Cited by 39 · see citing works
Trypanosoma cruzi: Analysis of the complete PUF RNA-binding protein family
Caro, F., Bercovich, N., Atorrasagasti, C., Levin, M. J., & Vázquez, M. (2006) · Experimental Parasitology · doi:10.1016/j.exppara.2005.12.015 · Cited by 36 · see citing works
Chromatin-based transcriptional punctuation: Figure 1.Preprint
Talbert, P. B., & Henikoff, S. (2009) · Genes & Development · doi:10.1101/gad.1806409 · Cited by 29 · see citing works
Dreesen, O., & Cross, G. (2006) · Eukaryotic Cell · doi:10.1128/ec.00059-06 · Cited by 26 · see citing works
Holzer, T. R., Mishra, K. K., LeBowitz, J. H., & FORNEY, J. D. (2007) · Molecular and Biochemical Parasitology · doi:10.1016/j.molbiopara.2007.10.001 · Cited by 21 · see citing works
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A compendium of RNA-binding motifs for decoding gene regulation
Ray, D., Kazan, H., Cook, K. B., Weirauch, M. T., Najafabadi, H. S., Li, X., Gueroussov, S., Albu, M., Zheng, H., Yang, A., et al. (2013) · Nature · doi:10.1038/nature12311 · Cited by 1,480 · see citing works
Drug resistance and treatment failure in leishmaniasis: A 21st century challenge
Ponte‐Sucre, A., Gamarro, F., Dujardin, J., Barrett, M. P., López‐Vélez, R., García‐Hernández, R., Pountain, A. W., Mwenechanya, R., & Papadopoulou, B. (2017) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0006052 · Cited by 971 · see citing works
Bayer‐Santos, E., Aguilar-Bonavides, C., Rodrigues, S. P., Cordero, E. M., Marques, A. F., Varela-Ramı́rez, A., Choi, H., Yoshida, N., da Silveira, J. F., & de Almeida, I. C. (2012) · Journal of Proteome Research · doi:10.1021/pr300947g · Cited by 257 · see citing works
Trypanosomatids Are Much More than Just Trypanosomes: Clues from the Expanded Family Tree
Lukeš, J., Butenko, A., Hashimi, H., Maslov, D. A., Votýpka, J., & Yurchenko, V. (2018) · Trends in Parasitology · doi:10.1016/j.pt.2018.03.002 · Cited by 200 · see citing works
Dumetz, F., Imamura, H., Sanders, M. J., Šeblová, V., Myšková, J., Pescher, P., Vanaerschot, M., Meehan, C. J., Cuypers, B., Muylder, G. D., et al. (2017) · mBio · doi:10.1128/mbio.00599-17 · Cited by 196 · see citing works
Smircich, P., Eastman, G., Poubel, S. B., Duhagon, M. A., Guerra-Slompo, E. P., Garat, B., Goldenberg, S., Munroe, D. J., Dallagiovanna, B., Holetz, F., et al. (2015) · BMC Genomics · doi:10.1186/s12864-015-1563-8 · Cited by 146 · see citing works
The mRNA-bound proteome of the human malaria parasite Plasmodium falciparum
Bunnik, E. M., Batugedara, G., Saraf, A., Prudhomme, J. G., Florens, L. A., & Roch, K. G. L. (2016) · Genome biology · doi:10.1186/s13059-016-1014-0 · Cited by 92 · see citing works
Characterization of the small RNA content of Trypanosoma cruzi extracellular vesicles
Bayer‐Santos, E., Lima, F. M., Ruiz, J. C., de Almeida, I. C., & da Silveira, J. F. (2014) · Molecular and Biochemical Parasitology · doi:10.1016/j.molbiopara.2014.02.004 · Cited by 86 · see citing works
Highly Sensitive In Vivo Imaging of Trypanosoma brucei Expressing “Red-Shifted” Luciferase
McLatchie, A. P., Burrell‐Saward, H., Myburgh, E., Lewis, M. D., Ward, T. H., Mottram, J. C., Croft, S. L., Kelly, J. M., & Taylor, M. C. (2013) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0002571 · Cited by 76 · see citing works
Callejas‐Hernández, F., Rastrojo, A., Poveda, C., Gironès, N., & Fresno, M. (2018) · Scientific Reports · doi:10.1038/s41598-018-32877-2 · Cited by 73 · see citing works
Transcriptionally Driven DNA Replication Program of the Human Parasite Leishmania major
Lombraña, R., Álvarez, A., Fernández-Justel, J. M., Almeida, R., Poza‐Carrión, C., Gomes, F., Calzada, A., Requena, J. M., & Gómez, M. (2016) · Cell Reports · doi:10.1016/j.celrep.2016.07.007 · Cited by 71 · see citing works
Herreros‐Cabello, A., Callejas‐Hernández, F., Gironès, N., & Fresno, M. (2020) · Genes · doi:10.3390/genes11101196 · Cited by 65 · see citing works
de Jesus, T. C. L., Nunes, V. S., Lopes, M. D. C., Martil, D. E., Iwai, L. K., Moretti, N. S., Machado, F. C., de Lima-Stein, M. L., Thiemann, O. H., Elias, M. C., et al. (2016) · Journal of Proteome Research · doi:10.1021/acs.jproteome.6b00208 · Cited by 61 · see citing works
Basal body multipotency and axonemal remodelling are two pathways to a 9+0 flagellum
Wheeler, R. J., Gluenz, E., & Keith Gull, B. (2015) · Nature Communications · doi:10.1038/ncomms9964 · Cited by 60 · see citing works
Berg, M., Vanaerschot, M., Jankevics, A., Cuypers, B., Maes, I., Mukherjee, S., Khanal, B., Rijal, S., Roy, S., Opperdoes, F. R., et al. (2013) · Molecular Microbiology · doi:10.1111/mmi.12374 · Cited by 59 · see citing works
Freire, E. R., Sturm, N. R., Campbell, D. A., & Neto, O. P. D. M. (2017) · Pathogens · doi:10.3390/pathogens6040055 · Cited by 59 · see citing works
Regulation of Translation in the Protozoan Parasite Leishmania
Karamysheva, Z., Guarnizo, S. G. G., & Karamyshev, A. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21082981 · Cited by 45 · see citing works
Redox Balance Keepers and Possible Cell Functions Managed by Redox Homeostasis in Trypanosoma cruzi
Mesías, A. C., Garg, N. J., & Zago, M. P. (2019) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2019.00435 · Cited by 53 · see citing works
LC-MS METABOLOMICS FROM STUDY DESIGN TO DATA-ANALYSIS – USING A VERSATILE PATHOGEN AS A TEST CASE
Berg, M., Vanaerschot, M., Jankevics, A., Cuypers, B., Rainer Breitling, A., & Dujardin, J. (2013) · Computational and Structural Biotechnology Journal · doi:10.5936/csbj.201301002 · Cited by 50 · see citing works
Comparative Proteomic Analysis of Lysine Acetylation in Trypanosomes
Moretti, N. S., Cestari, I. D. S., Anupama, A., Stuart, K., & Schenkman, S. (2017) · Journal of Proteome Research · doi:10.1021/acs.jproteome.7b00603 · Cited by 49 · see citing works
Rojo, D., Canuto, G. A. B., Castilho-Martins, E. A., Tavares, M. F. M., Barbas, C., López‐Gonzálvez, Á., & Rivas, L. (2015) · PLoS ONE · doi:10.1371/journal.pone.0130675 · Cited by 48 · see citing works
Secretome analysis of Trypanosoma cruzi by proteomics studies
Brossas, J., Gulin, J. E. N., Bisio, M. M. C., Chapelle, M., Marinach, C., Bordessoulles, M., Ruiz, G. P., Vion, J., Paris, L., Altcheh, J., et al. (2017) · PLoS ONE · doi:10.1371/journal.pone.0185504 · Cited by 41 · see citing works
(Post-) Genomic approaches to tackle drug resistance in Leishmania
Berg, M., Mannaert, A., Vanaerschot, M., der Auwera, G. V., & Dujardin, J. (2013) · Parasitology · doi:10.1017/s0031182013000140 · Cited by 40 · see citing works
RNA in development: how ribonucleoprotein granules regulate the life cycles of pathogenic protozoa
Krämer, S. (2013) · Wiley Interdisciplinary Reviews - RNA · doi:10.1002/wrna.1207 · Cited by 38 · see citing works
Bastos, I. M. D., Motta, F., Grellier, P., & Santana, J. M. (2013) · Current Medicinal Chemistry · doi:10.2174/0929867311320250006 · Cited by 38 · see citing works
Nutritional stress affects an atypical cap-binding protein in Leishmania
Zinoviev, A., Manor, S., & Shapira, M. (2012) · RNA Biology · doi:10.4161/rna.22709 · Cited by 38 · see citing works
Ruy, P. D. C., Teles, N. M. M., Magalhães, R. D. M., Freitas-Castro, F., da Silva, L. D., Defina, T. P. A., Vasconcelos, E. J. R., Myler, P. J., & Cruz, Â. K. (2019) · RNA Biology · doi:10.1080/15476286.2019.1574161 · Cited by 37 · see citing works
Neglected Tropical Diseases in the Post-Genomic Era
Buscaglia, C. A., Kissinger, J. C., & Agüero, F. (2015) · Trends in Genetics · doi:10.1016/j.tig.2015.06.002 · Cited by 36 · see citing works
Gaudenzi, J. G. D., Carmona, S. J., Agüero, F., & Frasch, A. C. C. (2013) · PeerJ · doi:10.7717/peerj.118 · Cited by 33 · see citing works
Self-citationLaranjeira‐Silva, M. F., Wang, W., Samuel, T. K., Maeda, F. Y., Michailowsky, V., Hamza, I., Liu, Z., & Andrews, N. W. (2018) · PLoS Pathogens · doi:10.1371/journal.ppat.1007140 · Cited by 31 · see citing works
Krüger, T., Hofweber, M., & Krämer, S. (2013) · Molecular Biology of the Cell · doi:10.1091/mbc.e13-01-0068 · Cited by 30 · see citing works
de Assis, L. A., Filho, M. D. V. C. S., Silva, J. R. D. C., Bezerra, M. J. R., de Aquino, I. R. P. U. C., Merlo, K. D. C., Holetz, F., Probst, C., Rezende, A. M., Papadopoulou, B., et al. (2021) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0009899 · Cited by 29 · see citing works
Li, Z., Gaudenzi, J. G. D., Álvarez, V. E., Mendiondo, N., Wang, H., Kissinger, J. C., Frasch, A. C. C., & Docampo, R. (2012) · Journal of Biological Chemistry · doi:10.1074/jbc.m111.338699 · Cited by 29 · see citing works
Self-citationRNA Binding Proteins and Gene Expression Regulation in Trypanosoma cruzi
Romagnoli, B. A. A., Holetz, F., Alves, L. R., & Goldenberg, S. (2020) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2020.00056 · Cited by 27 · see citing works
Conservation and Variation in Strategies for DNA Replication of Kinetoplastid Nuclear Genomes
Marques, C. A., & McCulloch, R. (2017) · Current Genomics · doi:10.2174/1389202918666170815144627 · Cited by 25 · see citing works
Chávez, S. S., Eastman, G., Smircich, P., Becco, L., Oliveira‐Rizzo, C., Fort, R. S., Potenza, M., Garat, B., Sotelo-Silveira, J. R., & Duhagon, M. A. (2017) · PLoS ONE · doi:10.1371/journal.pone.0188441 · Cited by 24 · see citing works
Regulation of RNA binding proteins in trypanosomatid protozoan parasites
Romaniuk, M. A. (2016) · World Journal of Biological Chemistry · doi:10.4331/wjbc.v7.i1.146 · Cited by 22 · see citing works
Polysome Profiling in Leishmania, Human Cells and Mouse Testis
Karamysheva, Z. N., Tikhonova, E. B., Grozdanov, P. N., Huffman, J. C., Baca, K. R., Karamyshev, A., Denison, R. B., MacDonald, C. C., Zhang, K., & Karamyshev, A. L. (2018) · Journal of Visualized Experiments · doi:10.3791/57600 · Cited by 23 · see citing works
Lucena, A. C. R., Amorim, J. C., Lima, C. V. D. P., Batista, M., Krieger, M. A., de Godoy, L. M. F., & Marchini, F. K. (2019) · Cell Stress and Chaperones · doi:10.1007/s12192-019-01018-7 · Cited by 22 · see citing works
Alcântara, M. V., Kessler, R. L., Gonçalves, R. E. G., Marliére, N. P., Guarneri, A. A., Picchi, G. F. A., & Fragoso, S. P. (2018) · Molecular and Biochemical Parasitology · doi:10.1016/j.molbiopara.2018.01.006 · Cited by 18 · see citing works
Sabalette, K. B., Romaniuk, M. A., Noé, G., Cassola, A., Campo, V. A., & Gaudenzi, J. G. D. (2019) · Journal of Biological Chemistry · doi:10.1074/jbc.ra118.007123 · Cited by 18 · see citing works
Self-citationPascoalino, B. S., Dindar, G., Vieira‐da‐Rocha, J. P., Machado, C. R., Janzen, C. J., & Schenkman, S. (2013) · Nucleic Acids Research · doi:10.1093/nar/gkt1267 · Cited by 18 · see citing works
Chávez, S., Urbaniak, M. D., Benz, C., Smircich, P., Garat, B., Sotelo-Silveira, J. R., & Duhagon, M. A. (2021) · mSphere · doi:10.1128/msphere.00366-21 · Cited by 17 · see citing works
Comparative high-throughput analysis of the Trypanosoma cruzi response to organometallic compounds
Mosquillo, M. F., Smircich, P., Ciganda, M., Lima, A. E., Gambino, D., Garat, B., & Pérez‐Díaz, L. (2020) · Metallomics · doi:10.1039/d0mt00030b · Cited by 17 · see citing works
Trypanosoma brucei: meet the system
Achcar, F., Kerkhoven, E. J., & Barrett, M. P. (2014) · Current Opinion in Microbiology · doi:10.1016/j.mib.2014.06.007 · Cited by 16 · see citing works
Corrêa, P. R. C., Cordero, E. M., Gentil, L. G., Bayer‐Santos, E., & da Silveira, J. F. (2013) · The Scientific World JOURNAL · doi:10.1155/2013/156734 · Cited by 15 · see citing works
A Host–Pathogen Interaction Reduced to First Principles: Antigenic Variation in T. brucei
Hovel-Miner, G. A., Mugnier, M. R., Papavasiliou, F. N., Pinger, J., & Schulz, D. (2015) · Results and problems in cell differentiation · doi:10.1007/978-3-319-20819-0_2 · Cited by 15 · see citing works
Neto, O. P. D. M., Lima, T. D. C. D. C., Merlo, K. D. C., Romão, T. P., Rocha, P. O., de Assis, L. A., do Nascimento, L. M., Xavier, C. C., Rezende, A. M., Reis, C. R. D. S., et al. (2018) · RNA Biology · doi:10.1080/15476286.2018.1445958 · Cited by 15 · see citing works
Azevedo, L. G., Queiroz, A. T. L., Barral, A. M. P., Santos, L. A., & Ramos, P. I. P. (2020) · Parasites & Vectors · doi:10.1186/s13071-020-3914-9 · Cited by 15 · see citing works
Trypanosoma cruzi: Genomic Diversity and Structure
Herreros‐Cabello, A., Callejas‐Hernández, F., Gironès, N., & Fresno, M. (2025) · Pathogens · doi:10.3390/pathogens14010061 · Cited by 14 · see citing works
Kariithi, H. M., Boeren, S. A., Murungi, E. K., Vlak, J. M., & Abd‐Alla, A. M. M. (2016) · Parasites & Vectors · doi:10.1186/s13071-016-1714-z · Cited by 14 · see citing works
Alvarez, L. H., Junior, A. B. D. O., González, J. E. H., Chahine, J., Pascutti, P. G., de Araújo, A. S., & de Souza, F. P. (2021) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2021.03.036 · Cited by 13 · see citing works
Current Status of Regulatory Non-Coding RNAs Research in the Tritryp
Fort, R. S., Chavez, S., Trinidad-Barnech, J. M., Oliveira‐Rizzo, C., Smircich, P., Sotelo-Silveira, J. R., & Duhagon, M. A. (2022) · Non-Coding RNA · doi:10.3390/ncrna8040054 · Cited by 13 · see citing works
Gaudenzi, J. G. D., Jäger, A. V., Izcovich, R., & Campo, V. A. (2015) · Journal of Eukaryotic Microbiology · doi:10.1111/jeu.12288 · Cited by 13 · see citing works
Self-citationCestari, I. D. S., & Stuart, K. D. (2020) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0008689 · Cited by 12 · see citing works
Pérez‐Díaz, L., Silva, T. C., & Teixeira, S. M. R. (2016) · Molecular and Biochemical Parasitology · doi:10.1016/j.molbiopara.2016.12.005 · Cited by 12 · see citing works
Berná, L., Chiribao, M. L., Pita, S., Álvarez-Valín, F., & Parodi‐Talice, A. (2025) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0012950 · Cited by 11 · see citing works
Dynamic composition of stress granules in Trypanosoma brucei
Aye, H. M., Li, F., & He, C. Y. (2024) · PLoS Pathogens · doi:10.1371/journal.ppat.1012666 · Cited by 10 · see citing works
Comparative and systems analyses of Leishmania spp. non-coding RNAs through developmental stages
Martinez-Hernandez, J. E., Aliaga-Tobar, V., González, C., do Monte‐Neto, R. L., Martín, A. J. M., & Maracaja‐Coutinho, V. (2025) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0013108 · Cited by 10 · see citing works
Modulation of Virulence Factors during Trypanosoma cruzi Differentiation
de Oliveira, C. I., Holetz, F., Alves, L. R., & Ávila, A. R. (2022) · Pathogens · doi:10.3390/pathogens12010032 · Cited by 10 · see citing works
Implication of CA repeated tracts on post-transcriptional regulation in Trypanosoma cruzi
Pastro, L., Smircich, P., Pérez‐Díaz, L., Duhagon, M. A., & Garat, B. (2013) · Experimental Parasitology · doi:10.1016/j.exppara.2013.04.004 · Cited by 10 · see citing works
The Role of the Trypanosoma cruzi TcNRBD1 Protein in Translation
de Oliveira, C. I., Carvalho, P. C., Alves, L. R., & Goldenberg, S. (2016) · PLoS ONE · doi:10.1371/journal.pone.0164650 · Cited by 10 · see citing works
Durante, I. M., Cámara, M. D. L. M., & Buscaglia, C. A. (2015) · PLoS ONE · doi:10.1371/journal.pone.0130099 · Cited by 10 · see citing works
A Genome-Wide Analysis of Genetic Diversity in Trypanosoma cruzi Intergenic Regions
Panunzi, L. G., & Agüero, F. (2014) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0002839 · Cited by 10 · see citing works
Níttolo, A. G., Bañuelos, C. P., Saborit, J. I., Tekiel, V., Sánchez, D. O., & Levy, G. V. (2018) · Molecular and Biochemical Parasitology · doi:10.1016/j.molbiopara.2018.07.006 · Cited by 9 · see citing works
Batista, C. M., Kalb, L. C., Moreira, C. M. D. N., Batista, G. T. H., Eger, I., & Soares, M. J. (2013) · Experimental Parasitology · doi:10.1016/j.exppara.2013.01.023 · Cited by 9 · see citing works
Neto, O. P. D. M., Reis, C. R. D. S., Moura, D. M. N., Freire, E. R., & Carrington, M. (2016) · Springer eBooks · doi:10.1007/978-3-319-39468-8_17 · Cited by 9 · see citing works
Callejas‐Hernández, F., Gutierrez‐Nogués, Á., Rastrojo, A., Gironès, N., & Fresno, M. (2019) · Scientific Reports · doi:10.1038/s41598-019-53924-6 · Cited by 9 · see citing works
Bastos, I. M. D., Motta, F. N., Grellier, P., & Santana, J. M. (2013) · Current Medicinal Chemistry · doi:10.2174/09298673113209990121 · Cited by 9 · see citing works
Aim for the Readers! Bromodomains As New Targets Against Chagas’ Disease
Alonso, V. L., Tavernelli, L. E., Pezza, A., Cribb, P., Ritagliati, C., & Serra, E. C. (2018) · Current Medicinal Chemistry · doi:10.2174/0929867325666181031132007 · Cited by 9 · see citing works
Terrão, M. C., Vasconcelos, E. J. R., Defina, T. P. A., Myler, P. J., & Cruz, Â. K. (2017) · PLoS ONE · doi:10.1371/journal.pone.0183401 · Cited by 9 · see citing works
Carrasco-Martin, M., Martí‐Carreras, J., Gómez-Ponce, M., Alcover, M. M., Roura, X., Ferrer, L., Baneth, G., Bruno, F., Chicharro, C., Cordeiro‐da‐Silva, A., et al. (2025) · Parasites & Vectors · doi:10.1186/s13071-025-07105-2 · Cited by 8 · see citing works
Sabalette, K. B., Sotelo-Silveira, J. R., Smircich, P., & Gaudenzi, J. G. D. (2023) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2023.104623 · Cited by 8 · see citing works
Nihashi, N., Inaoka, D. K., Tsuge, C., Balogun, E. O., Osada, Y., Goto, Y., Matsumoto, Y., Nara, T., Mogi, T., Harada, S., et al. (2016) · Springer eBooks · doi:10.1007/978-3-319-47101-3_9 · Cited by 8 · see citing works
Araya, E. R., Merli, M. L., Cribb, P., de Souza, V. C., & Serra, E. C. (2023) · ACS Infectious Diseases · doi:10.1021/acsinfecdis.3c00148 · Cited by 7 · see citing works
Cortez, D. R., Lima, F. M., Reis-Cunha, J. L., Bartholomeu, D. C., Villacis, R. A. R., Rogatto, S. R., Costa-Martins, A. G., Marchiano, F. S., do Carmo, R. A., da Silveira, J. F., et al. (2022) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2022.760830 · Cited by 5 · see citing works
Advances in euglenoid genomics: unravelling the fascinating biology of a complex clade
Fields, O., Hammond, M., Xu, X., & O’Neill, E. C. (2024) · Trends in Genetics · doi:10.1016/j.tig.2024.07.007 · Cited by 5 · see citing works
Halliday, C., Dean, S., Sunter, J. D., & Wheeler, R. J. (2023) · Wellcome Open Research · doi:10.12688/wellcomeopenres.18586.2 · Cited by 5 · see citing works
Mild, J. G., Fernández, L. R., Gayet, O., Iovanna, J., Dusetti, N., & Edreira, M. M. (2018) · Molecular Biotechnology · doi:10.1007/s12033-018-0078-3 · Cited by 5 · see citing works
Diversity and genome mapping assessment of disordered and functional domains in trypanosomatids
Tavares, G. S., Gonçalves, L. O., Guimarães, F. G., Guimarães, P. A. S., Rocha, L. G. D. N., Carvalho, M. G. R., Resende, D. D. M., & Ruiz, J. C. (2020) · Journal of Proteomics · doi:10.1016/j.jprot.2020.103919 · Cited by 5 · see citing works
Suspension Culture of Protozoan Organisms
Hartmann, M., & Breitling, R. (2014) · doi:10.1002/9783527683321.ch09 · Cited by 5 · see citing works
The epimastigote stage-specific gene expression of CESP is tightly regulated by its 3′ UTR
Suganuma, K., Yamasaki, S., Asada, M., Kawazu, S., & Inoue, N. (2012) · Molecular and Biochemical Parasitology · doi:10.1016/j.molbiopara.2012.09.010 · Cited by 4 · see citing works
Suganuma, K., Mochabo, K. M., Hakimi, H., Yamasaki, S., Yamagishi, J., Asada, M., Kawazu, S.-I., & Inoue, N. (2013) · Molecular and Biochemical Parasitology · doi:10.1016/j.molbiopara.2013.09.001 · Cited by 4 · see citing works
Ghavidel, A. A., Jajarmi, V., Bandehpour, M., & Kazemi, B. (2022) · Iranian Journal of Parasitology · doi:10.18502/ijpa.v17i3.10618 · Cited by 4 · see citing works
Niemirowicz, G. T., Carlevaro, G., Campetella, O., Bouvier, L. A., & Mucci, J. (2024) · Heliyon · doi:10.1016/j.heliyon.2024.e24595 · Cited by 4 · see citing works
Metabolite‐dependent regulation of gene expression in T rypanosoma brucei
Kim, D., & Barrett, M. P. (2013) · Molecular Microbiology · doi:10.1111/mmi.12243 · Cited by 4 · see citing works
Ruíz, E., Ramirez-Segura, C. A., Casas-Vargas, J. C., Ospina, M. I., Requena, J. M., & Puerta, C. J. (2018) · Universitas Scientiarum · doi:10.11144/javeriana.sc23-2.cotm · Cited by 4 · see citing works
Interactions between RNA-binding proteins and P32 homologues in trypanosomes and human cells
Polledo, J. M., Cervini, G., Romaniuk, M. A., & Cassola, A. (2015) · Current Genetics · doi:10.1007/s00294-015-0519-5 · Cited by 3 · see citing works
Self-citationInnovation through instability? Genome (dis)organisation in Trypanosoma cruzi
Dickson, K. P., Costales, J. A., Domagalska, M. A., Veken, F. V., & Llewellyn, M. S. (2025) · Trends in Parasitology · doi:10.1016/j.pt.2025.04.008 · Cited by 2 · see citing works
Calcium homeostasis in trypanosomatids: A review of molecular targets and inhibitors
Coelho, N. C. C., Velásquez, Á. M. A., de Lima, J. S., Ramos, A. L. D., Cilli, E. M., & Graminha, M. A. S. (2025) · Cell Calcium · doi:10.1016/j.ceca.2025.103086 · Cited by 2 · see citing works
Homologous Expression of Glycosylphosphatidylinositol-Anchored Glycoproteins in Trypanosoma cruzi
Balouz, V., Mesías, A. C., Cameán, C. C., Ducrey, I., Lobo, M. M., Durante, I. M., Cánepa, G. E., Buscaglia, C. A., & Cámara, M. D. L. M. (2019) · Methods in molecular biology · doi:10.1007/978-1-4939-9148-8_9 · Cited by 2 · see citing works
Sabalette, K. B., Campo, V. A., Sotelo-Silveira, J. R., Smircich, P., & Gaudenzi, J. G. D. (2024) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0012179 · Cited by 2 · see citing works
Self-citationMendes, I. C., Bertoldo, W. D. R., Miranda-Junior, A. S., de Assis, A. V., Repolês, B. M., Ferreira, W. R. R., Chame, D. F., Souza, D. D. L., Pavani, R., Macedo, A. M., et al. (2024) · DNA repair · doi:10.1016/j.dnarep.2024.103726 · Cited by 2 · see citing works
Genome alteration of Leishmania orientalis under Amphotericin B inhibiting conditions
Anuntasomboon, P., Siripattanapipong, S., Unajak, S., Choowongkomon, K., Burchmore, R., Leelayoova, S., Mungthin, M., & E-kobon, T. (2024) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0012716 · Cited by 2 · see citing works
Berná, L., Chiribao, M. L., Pita, S., Álvarez-Valín, F., & Parodi‐Talice, A. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.02.17.580826 · Cited by 2 · see citing works
Balouz, V., Dean, A. A. C., Romer, G., Robello, C., Berná, L., & Buscaglia, C. A. (2025) · Scientific Reports · doi:10.1038/s41598-025-23742-0 · Cited by 1 · see citing works
Beyond the transcript: Chromatin implications in trans-splicing in Trypanosomatids
Siri, R. T. Z., Beati, P., Inchausti, L., Smircich, P., Alonso, G., & Ocampo, J. (2026) · PLoS ONE · doi:10.1371/journal.pone.0343367 · Cited by 1 · see citing works
Tawfiq, H. A., Mohammed, A. A., & Hummadi, Y. M. K. A. M. (2026) · Journal Of Biochemical Technology · doi:10.51847/g8pt52l1nd · Cited by 1 · see citing works
- Authors
- De Gaudenzi, J. G., Noé, G., Campo, V. A., Frasch, A. C., & Cassola, A.
- Affiliations
- Instituto de Investigaciones Biotecnológicas – Instituto Tecnológico Chascomús, UNSAM-CONICET, Av. Gral. Paz 5445, INTI, Edificio 24, 1650 San Martín, Provincia de Buenos Aires, Argentina.
- Consejo Nacional de Investigaciones Científicas y Técnicas (AR)
- Venue
- Essays in Biochemistry
- Publisher
- Portland Press Ltd.
- Published
- 2011-10-24
- Volume
- 51
- Pages
- 31-46
- ISSN
- 0071-1365 (ISSN-L)
- 1744-1358
- OpenAlex
- W2292320336
- Cited by
- 116
- References
- 51
- Citations by year
- 2026: 6 · 2025: 9 · 2024: 8 · 2023: 4 · 2022: 4 · 2021: 5 · 2020: 7 · 2019: 8 · 2018: 12 · 2017: 8 · 2016: 9 · 2015: 9 · 2014: 5 · 2013: 18 · 2012: 4
- FWCI
- 1.01
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Essays in Biochemistry (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institute of Allergy and Infectious Diseases (AI0600645)
- Fogarty International Center (D43TW007888)
- Topics
- Health Sciences › Medicine › Epidemiology › Trypanosoma species research and implications
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Research and Splicing
- Health Sciences › Medicine › Public Health, Environmental and Occupational Health › Research on Leishmaniasis Studies
- Keywords
- gene expression regulation, trypanosomatids, polycistronic transcription, RNA polymerase II, post-transcriptional regulation, 3' untranslated region, RNA-binding proteins, messenger ribonucleoprotein complexes, Trypanosoma cruzi, Trypanosoma brucei, Leishmania major
- MeSH terms
- Animals, Chromatin, Gene Expression Regulation, Ribonucleoproteins, RNA Polymerase II, RNA Processing, Post-Transcriptional, RNA, Messenger, Transcription, Genetic, Trypanosoma, DNA, Protozoan, RNA-Binding Proteins, Genome, 3' Untranslated Regions
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