Pathways of carbon and energy metabolism of the epibiotic community associated with the deep-sea hydrothermal vent shrimp Rimicaris exoculata.
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BACKGROUND: The shrimp Rimicaris exoculata dominates the faunal biomass at many deep-sea hydrothermal vent sites at the Mid-Atlantic Ridge. In its enlarged gill chamber it harbors a specialized epibiotic bacterial community for which a nutritional role has been proposed. METHODOLOGY/PRINCIPAL FINDINGS: We analyzed specimens from the Snake Pit hydrothermal vent field on the Mid-Atlantic Ridge by complementing a 16S rRNA gene survey with the analysis of genes involved in carbon, sulfur and hydrogen metabolism. In addition to Epsilon- and Gammaproteobacteria, the epibiotic community unexpectedly also consists of Deltaproteobacteria of a single phylotype, closely related to the genus Desulfocapsa. The association of these phylogenetic groups with the shrimp was confirmed by fluorescence in situ hybridization. Based on functional gene analyses, we hypothesize that the Gamma- and Epsilonproteobacteria are capable of autotrophic growth by oxidizing reduced sulfur compounds, and that the Deltaproteobacteria are also involved in sulfur metabolism. In addition, the detection of proteobacterial hydrogenases indicates the potential for hydrogen oxidation in these communities. Interestingly, the frequency of these phylotypes in 16S rRNA gene clone libraries from the mouthparts differ from that of the inner lining of the gill chamber, indicating potential functional compartmentalization. CONCLUSIONS: Our data show the specific association of autotrophic bacteria with Rimicaris exoculata from the Snake Pit hydrothermal vent field, and suggest that autotrophic carbon fixation is contributing to the productivity of the epibiotic community with the reductive tricarboxylic acid cycle as one important carbon fixation pathway. This has not been considered in previous studies of carbon fixation and stable carbon isotope composition of the shrimp and its epibionts. Furthermore, the co-occurrence of sulfur-oxidizing and sulfur-reducing epibionts raises the possibility that both may be involved in the syntrophic exchange of sulfur compounds, which could increase the overall efficiency of this epibiotic community.
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Establishment of Epsilonbacteraeota from the Sulfurovaceae family was not as favored on egg envelopes as it was on pleopods.
“Surprisingly, although they have been reported as the dominant symbionts within the R. exoculata cephalothorax in many studies (Petersen et al., 2010; Hügler et al., 2011; Guri et al., 2012), establishment of Epsilonbacteraeota from the Sulfurovaceae family was not as favored on egg envelopes as it was on pleopods.”
From Is It First the Egg or the Shrimp? – Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development (2019) · cites this paper as Hügler et al., 2011
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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302 · see citing works
Thompson, J. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.24.4876 · Cited by 39,119 · see citing works
Hall, T. A. (1999) · Nucleic Acids Symposium Series · doi:10.14601/phytopathol_mediterr-14998u1.29 · Cited by 38,373 · see citing works
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
Guindon, S., & Gascuel, O. (2003) · Systematic Biology · doi:10.1080/10635150390235520 · Cited by 16,698 · see citing works
Nucleic acid techniques in bacterial systematics
Stackebrandt, E., & Goodfellow, M. (1991) · Wiley eBooks · Cited by 9,494 · see citing works
Lane, D. (1991) · Medical Entomology and Zoology · Cited by 7,944 · see citing works
ARB: a software environment for sequence data
Ludwig, W. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh293 · Cited by 6,649 · see citing works
Amann, R., Binder, B. J., Olson, R. J., Chisholm, S. W., Devereux, R., & Stahl, D. A. (1990) · Applied and Environmental Microbiology · doi:10.1128/aem.56.6.1919-1925.1990 · Cited by 3,998 · see citing works
Charlou, J., Donval, J., Fouquet, Y., Jean‐Baptiste, P., & Holm, N. G. (2002) · Chemical Geology · doi:10.1016/s0009-2541(02)00134-1 · Cited by 909 · see citing works
The versatile ε-proteobacteria: key players in sulphidic habitats
Campbell, B. J., Engel, A. S., Porter, M. L., & Takai, K. (2006) · Nature Reviews Microbiology · doi:10.1038/nrmicro1414 · Cited by 671 · see citing works
Oxidation of Reduced Inorganic Sulfur Compounds by Bacteria: Emergence of a Common Mechanism?
Friedrich, C. G., Röther, D., Bardischewsky, F., Quentmeier, A., & Fischer, J. (2001) · Applied and Environmental Microbiology · doi:10.1128/aem.67.7.2873-2882.2001 · Cited by 656 · see citing works
Chemistry of hot springs on the Mid-Atlantic Ridge
Campbell, A. C., Palmer, M. R., Klinkhammer, G. P., Bowers, T. S., Edmond, J. M., Lawrence, J. R., Casey, J., Thompson, G., Humphris, S. E., Rona, P. A., et al. (1988) · Nature · doi:10.1038/335514a0 · Cited by 451 · see citing works
Microbial Growth on C1 Compounds
(1996) · Springer eBooks · doi:10.1007/978-94-009-0213-8 · Cited by 439 · see citing works
Badger, M. R., & Bek, E. J. (2008) · Journal of Experimental Botany · doi:10.1093/jxb/erm297 · Cited by 435 · see citing works
Brazelton, W. J., Schrenk, M. O., Kelley, D. S., & Baross, J. A. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.00574-06 · Cited by 404 · see citing works
Nakagawa, S., & Takai, K. (2008) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2008.00502.x · Cited by 343 · see citing works
Finster, K. W., Liesack, W., & Thamdrup, B. (1998) · Applied and Environmental Microbiology · doi:10.1128/aem.64.1.119-125.1998 · Cited by 302 · see citing works
Genome of the Epsilonproteobacterial Chemolithoautotroph Sulfurimonas denitrificans
Sievert, S. M., Scott, K. M., Klotz, M. G., Chain, P., Hauser, L., Hemp, J., Hügler, M., Land, M., Lapidus, A. L., Larimer, F. W., et al. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.01844-07 · Cited by 264 · see citing works
Hügler, M., Wirsen, C. O., Fuchs, G., Taylor, C. D., & Sievert, S. M. (2005) · Journal of Bacteriology · doi:10.1128/jb.187.9.3020-3027.2005 · Cited by 259 · see citing works
Meyer, B., & Kuever, J. (2007) · Microbiology · doi:10.1099/mic.0.2006/003152-0 · Cited by 248 · see citing works
Deep-sea vent ε-proteobacterial genomes provide insights into emergence of pathogens
Nakagawa, S., Takaki, Y., Shimamura, S., Reysenbach, A., Takai, K., & Horikoshi, K. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0700687104 · Cited by 246 · see citing works
López‐García, P., Duperron, S., Philippot, P., Foriel, J., Susini, J., & Moreira, D. (2003) · Environmental Microbiology · doi:10.1046/j.1462-2920.2003.00495.x · Cited by 221 · see citing works
Dominance of one bacterial phylotype at a Mid-Atlantic Ridge hydrothermal vent site.
Polz, M. F., & Cavanaugh, C. M. (1995) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.92.16.7232 · Cited by 217 · see citing works
Endosymbiotic sulphate-reducing and sulphide-oxidizing bacteria in an oligochaete worm
Dubilier, N., Mülders, C., Ferdelman, T. G., de Beer, D., Pernthaler, A., Klein, M., Wagner, M., Erséus, C., Thiermann, F., Krieger, J., et al. (2001) · Nature · doi:10.1038/35077067 · Cited by 215 · see citing works
Dahl, C., & Friedrich, C. G. (2007) · Springer eBooks · doi:10.1007/978-3-540-72682-1 · Cited by 213 · see citing works
Takai, K., Campbell, B. J., Cary, S. C., Suzuki, M., Oida, H., Nunoura, T., Hirayama, H., Nakagawa, S., Suzuki, Y., Inagaki, F., et al. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.11.7310-7320.2005 · Cited by 201 · see citing works
Sirev�g, R., Buchanan, B. B., Berry, J. A., & Troughton, J. H. (1977) · Archives of Microbiology · doi:10.1007/bf00446651 · Cited by 196 · see citing works
Evolutionary innovation: a bone‐eating marine symbiosis
Goffredi, S. K., Orphan, V. J., Rouse, G. W., Jahnke, L. L., Embaye, T., Turk, K. A., Lee, R., & Vrijenhoek, R. C. (2005) · Environmental Microbiology · doi:10.1111/j.1462-2920.2005.00824.x · Cited by 166 · see citing works
Campbell, B. J., & Cary, S. C. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.10.6282-6289.2004 · Cited by 163 · see citing works
Feeding biology of the shrimp Rimicaris exoculata at hydrothermal vents on the Mid-Atlantic Ridge
Dover, C. L. V., Fry, B., Grassle, J. F., Humphris, S. E., & Rona, P. A. (1988) · Marine Biology · doi:10.1007/bf00391196 · Cited by 160 · see citing works
Goffredi, S. K., Warén, A., Orphan, V. J., Dover, C. L. V., & Vrijenhoek, R. C. (2004) · Applied and Environmental Microbiology · doi:10.1128/aem.70.5.3082-3090.2004 · Cited by 158 · see citing works
Janssen, P. H., Schuhmann, A., Bak, F., & Liesack, W. (1996) · Archives of Microbiology · doi:10.1007/s002030050374 · Cited by 149 · see citing works
Thompson, G., Humphris, S. E., Schroeder, B. W., Sulanowska, M., & Rona, P. A. (1988) · The Canadian Mineralogist · Cited by 148 · see citing works
Metabolic versatility of the Riftia pachyptila endosymbiont revealed through metagenomics
Robidart, J. C., Bench, S. R., Feldman, R. A., Novoradovsky, A., Podell, S. B., Gaasterland, T., Allen, E. E., & Felbeck, H. (2008) · Environmental Microbiology · doi:10.1111/j.1462-2920.2007.01496.x · Cited by 146 · see citing works
Chemosynthetic microbial activity at Mid‐Atlantic Ridge hydrothermal vent sites
Wirsen, C. O., Jannasch, H. W., & Molyneaux, S. J. (1993) · Journal of Geophysical Research Atmospheres · doi:10.1029/92jb01556 · Cited by 145 · see citing works
Growth of sulfate-reducing bacteria with sulfur as electron acceptor
Biebl, H., & Pfennig, N. (1977) · Archives of Microbiology · doi:10.1007/bf00446664 · Cited by 142 · see citing works
TWO NEW CARIDEAN SHRIMPS (BRESILIIDAE) FROM A HYDROTHERMAL FIELD ON THE MID-ATLANTIC RIDGE
Williams, A. B., & Rona, P. A. (1986) · Journal of Crustacean Biology · doi:10.1163/193724086x00299 · Cited by 140 · see citing works
Food sources, behaviour, and distribution of hydrothermal vent shrimps at the Mid-Atlantic Ridge
Gebruk, A. V., Southward, E. C., Kennedy, H. A., & SOUTHWARD, A. J. (2000) · Journal of the Marine Biological Association of the United Kingdom · doi:10.1017/s0025315400002186 · Cited by 133 · see citing works
Campbell, B. J., Stein, J. L., & Cary, S. C. (2003) · Applied and Environmental Microbiology · doi:10.1128/aem.69.9.5070-5078.2003 · Cited by 131 · see citing works
Two New Caridean Shrimps (Bresiliidae) from a Hydrothermal Field on the Mid-Atlantic Ridge
Williams, A. B., & Rona, P. A. (1986) · Journal of Crustacean Biology · doi:10.2307/1548184 · Cited by 129 · see citing works
Phylogeny and distribution of thesoxB gene among thiosulfate-oxidizing bacteria
Petri, R., Podgorsek, L., & Imhoff, J. F. (2001) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.2001.tb10600.x · Cited by 117 · see citing works
Suzuki, Y., Sasaki, T., Suzuki, M., Nogi, Y., Miwa, T., Takai, K., Nealson, K. H., & Horikoshi, K. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.9.5440-5450.2005 · Cited by 110 · see citing works
Trophic ecology of massive shrimp aggregations at a Mid‐Atlantic Ridge hydrothermal vent site
Polz, M. F., Robinson, J. J., Cavanaugh, C. M., & Dover, C. L. V. (1998) · Limnology and Oceanography · doi:10.4319/lo.1998.43.7.1631 · Cited by 109 · see citing works
Petersen, J. M., Ramette, A., Lott, C., Cambon‐Bonavita, M., Zbinden, M., & Dubilier, N. (2010) · Environmental Microbiology · doi:10.1111/j.1462-2920.2009.02129.x · Cited by 107 · see citing works
Self-citationRobinson, J. J., & Cavanaugh, C. M. (1995) · Limnology and Oceanography · doi:10.4319/lo.1995.40.8.1496 · Cited by 105 · see citing works
Zbinden, M., & Cambon-Bonavita, M.-A. (2003) · FEMS Microbiology Ecology · doi:10.1016/s0168-6496(03)00176-4 · Cited by 101 · see citing works
Durand, L., Zbinden, M., Cueff-Gauchard, V., Duperron, S., Roussel, E. G., Shillito, B., & Cambon-Bonavita, M.-A. (2010) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2009.00806.x · Cited by 100 · see citing works
Epibiotic bacteria associated with the recently discovered Yeti crab, Kiwa hirsuta
Goffredi, S. K., Jones, W. J., Erhlich, H., Springer, A., & Vrijenhoek, R. C. (2008) · Environmental Microbiology · doi:10.1111/j.1462-2920.2008.01684.x · Cited by 96 · see citing works
Perner, M., Kuever, J., Seifert, R., Pape, T., Koschinsky, A., Schmidt, K., Strauß, H., & Imhoff, J. F. (2007) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2007.00325.x · Cited by 95 · see citing works
Zbinden, M., Le Bris, N., Gaill, F., & Compère, P. (2004) · Marine Ecology Progress Series · doi:10.3354/meps284237 · Cited by 95 · see citing works
Sulfur Oxidation at Deep-Sea Hydrothermal Vents
Sievert, S. M., Hügler, M., Taylor, C. D., & Wirsen, C. O. (2007) · Springer eBooks · doi:10.1007/978-3-540-72682-1_19 · Cited by 93 · see citing works
Robinson, J. J., Scott, K. M., Swanson, S. T., O’Leary, M. H., Horken, K. M., Tabita, F. R., & Cavanaugh, C. M. (2003) · Limnology and Oceanography · doi:10.4319/lo.2003.48.1.0048 · Cited by 91 · see citing works
Zbinden, M., Shillito, B., Le Bris, N., de Villardi de Montlaur, C., Roussel, E., Guyot, F., Gaill, F., & Cambon-Bonavita, M.-A. (2008) · Journal of Experimental Marine Biology and Ecology · doi:10.1016/j.jembe.2008.03.009 · Cited by 89 · see citing works
Hügler, M., Gärtner, A., & Imhoff, J. F. (2010) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2010.00919.x · Cited by 86 · see citing works
Indigenous ectosymbiotic bacteria associated with diverse hydrothermal vent invertebrates
Goffredi, S. K. (2010) · Environmental Microbiology Reports · doi:10.1111/j.1758-2229.2010.00136.x · Cited by 80 · see citing works
Feeding specialization of bresiliid shrimps in the TAG site hydrothermal community
Gebruk, A., Pimenov, N., & Sawichev, A. (1993) · Marine Ecology Progress Series · doi:10.3354/meps098247 · Cited by 70 · see citing works
Corbari, L., Zbinden, M., Cambon-Bonavita, M., Gaill, F., & Compère, P. (2008) · Aquatic Biology · doi:10.3354/ab00024 · Cited by 67 · see citing works
Trophic ecology of Rimicaris exoculata : a combined lipid abundance/stable isotope approach
Rieley, G., Dover, C. L. V., Hedrick, D. B., & Eglinton, G. (1999) · Marine Biology · doi:10.1007/s002270050489 · Cited by 62 · see citing works
Peduzzi, S., Tonolla, M., & Hahn, D. (2003) · FEMS Microbiology Ecology · doi:10.1016/s0168-6496(03)00107-7 · Cited by 60 · see citing works
Interactions of Deep-Sea Vent Invertebrates with Their Environment: The Case of Rimicaris exoculata
Schmidt, C., Bris, N. L., & Gaill, F. (2008) · Journal of Shellfish Research · doi:10.2983/0730-8000(2008)27[79:iodviw]2.0.co;2 · Cited by 58 · see citing works
van den Ende, F. (1997) · FEMS Microbiology Ecology · doi:10.1016/s0168-6496(97)00014-7 · Cited by 57 · see citing works
van den Ende, F. P., Meier, J., & van Gemerden, H. (2006) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.1997.tb00392.x · Cited by 55 · see citing works
Schmidt, C., Vuillemin, R., Gall, C., Gaill, F., & Bris, N. L. (2007) · Marine Chemistry · doi:10.1016/j.marchem.2007.09.009 · Cited by 52 · see citing works
Geologic setting of the Snake Pit hydrothermal site: An active vent field on the Mid-Atlantic Ridge
Karson, J. A., & Brown, J. R. (1988) · Marine Geophysical Research · doi:10.1007/bf02424662 · Cited by 47 · see citing works
Suzuki, Y., Suzuki, M., Tsuchida, S., Takai, K., Horikoshi, K., SOUTHWARD, A. J., Newman, W. A., & Yamaguchi, T. (2009) · Journal of the Marine Biological Association of the United Kingdom · doi:10.1017/s0025315409000459 · Cited by 30 · see citing works
CO2 Fixation in Chemoautotroph-Invertebrate Symbioses: Expression of Form I and Form II RubisCO
Cavanaugh, C. M., & Robinson, J. J. (1996) · Springer eBooks · doi:10.1007/978-94-009-0213-8_38 · Cited by 25 · see citing works
Grabovich, M. Y., Muntyan, M. S., Lebedeva, V. Y., Ustiyan, V. S., & Дубинина, Г. А. (1999) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.1999.tb13772.x · Cited by 25 · see citing works
Schmidt, C., Corbari, L., Gaill, F., & Bris, N. L. (2009) · Geobiology · doi:10.1111/j.1472-4669.2009.00209.x · Cited by 18 · see citing works
Segonzac, M., Desaintlaurent, M., & Casanova, B. (1993) · Cahiers de biologie marine · doi:10.21411/cbm.a.b3683e29 · Cited by 16 · see citing works
Гальченко, В. Ф., Пименов, Н. В., Lein, A. Y., Galkin, S. V., Moskalev, L. I., & Ivanov, M. A. (1989) · Cited by 6 · see citing works
Flagged first, then by citations
2 of the 72 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Waite, D. W., Vanwonterghem, I., Rinke, C., Parks, D. H., Zhang, Y., Takai, K., Sievert, S. M., Simon, J., Campbell, B. J., Hanson, T. E., et al. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.00682 · Cited by 408 · see citing works
Rabus, R., Venceslau, S. S., Wöhlbrand, L., Voordouw, G., Wall, J. D., & Pereira, I. A. C. (2015) · Advances in microbial physiology/Advances in Microbial Physiology · doi:10.1016/bs.ampbs.2015.05.002 · Cited by 355 · see citing works
Hydrogen is an energy source for hydrothermal vent symbioses
Petersen, J. M., Zielinski, F., Pape, T., Seifert, R., Moraru, C., Amann, R., Hourdez, S., Girguis, P. R., Wankel, S. D., Barbe, V., et al. (2011) · Nature · doi:10.1038/nature10325 · Cited by 323 · see citing works
Han, Y., & Perner, M. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00989 · Cited by 246 · see citing works
Chemoautotrophy at Deep-Sea Vents: Past, Present, and Future
Sievert, S. M., & Vetriani, C. (2012) · Oceanography · doi:10.5670/oceanog.2012.21 · Cited by 182 · see citing works
Carbon Metabolic Pathways in Phototrophic Bacteria and Their Broader Evolutionary Implications
Tang, K., Tang, Y., & Blankenship, R. E. (2011) · Frontiers in Microbiology · doi:10.3389/fmicb.2011.00165 · Cited by 143 · see citing works
Ponsard, J., Cambon-Bonavita, M.-A., Zbinden, M., Lepoint, G., Joassin, A., Corbari, L., Shillito, B., Durand, L., Cueff-Gauchard, V., & Compère, P. (2013) · The ISME Journal · doi:10.1038/ismej.2012.87 · Cited by 110 · see citing works
Metagenomic insights into S(0) precipitation in a terrestrial subsurface lithoautotrophic ecosystem
Hamilton, T., Jones, D. S., Schaperdoth, I., & Macalady, J. (2014) · Frontiers in Microbiology · doi:10.3389/fmicb.2014.00756 · Cited by 71 · see citing works
Guri, M., Durand, L., Cueff-Gauchard, V., Zbinden, M., Crassous, P., Shillito, B., & Cambon-Bonavita, M.-A. (2012) · The ISME Journal · doi:10.1038/ismej.2011.133 · Cited by 87 · see citing works
Schwartz, E., Fritsch, J., & Friedrich, B. (2013) · Springer eBooks · doi:10.1007/978-3-642-30141-4_65 · Cited by 82 · see citing works
Jan, C., Petersen, J. M., Werner, J., Teeling, H., Huang, S., Glöckner, F. O., Golyshina, O. V., Dubilier, N., Golyshin, P. N., Jebbar, M., et al. (2014) · Environmental Microbiology · doi:10.1111/1462-2920.12406 · Cited by 83 · see citing works
Sanders, J. G., Beinart, R. A., Stewart, F. J., DeLong, E. F., & Girguis, P. R. (2013) · The ISME Journal · doi:10.1038/ismej.2013.45 · Cited by 77 · see citing works
Functional Metagenomic Investigations of Microbial Communities in a Shallow-Sea Hydrothermal System
Tang, K., Liu, K., Jiao, N., Zhang, Y., & Chen, C. A. (2013) · PLoS ONE · doi:10.1371/journal.pone.0072958 · Cited by 64 · see citing works
Peimbert, M., Alcaraz, L. D., Bonilla‐Rosso, G., Olmedo‐Álvarez, G., García‐Oliva, F., Segovia, L., Eguiarte, L. E., & Souza, V. (2012) · Astrobiology · doi:10.1089/ast.2011.0694 · Cited by 63 · see citing works
Microbial consumption of zero‐valence sulfur in marine benthic habitats
Pjevac, P., Kamyshny, A., Dyksma, S., & Mußmann, M. (2014) · Environmental Microbiology · doi:10.1111/1462-2920.12410 · Cited by 63 · see citing works
Saragas, N. P., Ferrao, P. N. F., Saragas, E., & Jacobson, B. F. (2013) · Foot and Ankle Surgery · doi:10.1016/j.fas.2013.11.002 · Cited by 58 · see citing works
Zhang, J., Sun, Q.-L., Luan, Z., Lian, C., & Sun, L. (2017) · Scientific Reports · doi:10.1038/s41598-017-02073-9 · Cited by 51 · see citing works
Alcaide, M. M., Tchigvintsev, A., Martínez‐Martínez, M., Popovic, A., Reva, O. N., Lafraya, Á., Bargiela, R., Nechitaylo, T. Y., Matesanz, R., Cambon‐Bonavita, M., et al. (2015) · Applied and Environmental Microbiology · doi:10.1128/aem.03387-14 · Cited by 50 · see citing works
Food-web complexity across hydrothermal vents on the Azores triple junction
Portail, M., Brandily, C., Cathalot, C., Colaço, A., Gélinas, Y., Husson, B., Sarradin, P., & Sarrazin, J. (2017) · Deep Sea Research Part I Oceanographic Research Papers · doi:10.1016/j.dsr.2017.11.010 · Cited by 47 · see citing works
Diversity and methane oxidation of active epibiotic methanotrophs on live Shinkaia crosnieri
Watsuji, T., Yamamoto, A., Takaki, Y., Uéda, K., Kawagucci, S., & Takai, K. (2014) · The ISME Journal · doi:10.1038/ismej.2013.226 · Cited by 46 · see citing works
Imhoff, J. F. (2016) · Microorganisms · doi:10.3390/microorganisms4020019 · Cited by 45 · see citing works
Phospholipid-based pyrazinamide spray-dried inhalable powders for treating tuberculosis.
Eedara, B. B., Tucker, I., & Das, S. C. (2016) · International journal of pharmaceutics · doi:10.1016/j.ijpharm.2016.04.038 · Cited by 38 · see citing works
Zhang, N., Song, C., Wang, M., Liu, Y., Hui, M., & Cui, Z. (2017) · PLoS ONE · doi:10.1371/journal.pone.0187842 · Cited by 39 · see citing works
Zbinden, M., & Cambon‐Bonavita, M. (2020) · Marine Ecology Progress Series · doi:10.3354/meps13467 · Cited by 38 · see citing works
Compressed sensing reconstruction improves sensitivity of variable density spiral fMRI
Holland, D. J., Liu, C., Song, X., Mazerolle, E. L., Stevens, M. T. R., Sederman, A. J., Gladden, L. F., D’Arcy, R. C. N., Bowen, C. V., & Beyea, S. (2013) · Magnetic Resonance in Medicine · doi:10.1002/mrm.24621 · Cited by 37 · see citing works
Goffredi, S. K., Gregory, A., Jones, W. J., Morella, N. M., & Sakamoto, R. I. (2013) · Molecular Ecology · doi:10.1111/mec.12439 · Cited by 34 · see citing works
Methou, P., Hernández-Ávila, I., Aube, J., Cueff-Gauchard, V., Gayet, N., Amand, L., Shillito, B., Pradillon, F., & Cambon-Bonavita, M.-A. (2019) · Frontiers in Microbiology · doi:10.3389/fmicb.2019.00808 · Cited by 30 · see citing works
Zwirglmaier, K., Reid, W. D. K., Heywood, J. L., Sweeting, C. J., Wigham, B. D., Polunin, N. V. C., Hawkes, J. A., Connelly, D. P., Pearce, D. A., & Linse, K. (2014) · MicrobiologyOpen · doi:10.1002/mbo3.227 · Cited by 33 · see citing works
Le Bloa, S., Boidin-Wichlacz, C., Cueff-Gauchard, V., Rosa, R. D., Cuvillier-Hot, V., Durand, L., Methou, P., Pradillon, F., Cambon-Bonavita, M.-A., & Tasiemski, A. (2020) · Frontiers in Immunology · doi:10.3389/fimmu.2020.01511 · Cited by 30 · see citing works
Durand, L., Roumagnac, M., Cueff-Gauchard, V., Jan, C., Guri, M., Tessier, C., Haond, M., Crassous, P., Zbinden, M., Arnaud-Haond, S., et al. (2015) · FEMS Microbiology Ecology · doi:10.1093/femsec/fiv101 · Cited by 32 · see citing works
O’Brien, C. E., Giovannelli, D., Govenar, B., Luther, G. W., Lutz, R. A., Shank, T. M., & Vetriani, C. (2015) · Deep Sea Research Part II Topical Studies in Oceanography · doi:10.1016/j.dsr2.2015.07.020 · Cited by 29 · see citing works
A Nematode of the Mid-Atlantic Ridge Hydrothermal Vents Harbors a Possible Symbiotic Relationship
Bellec, L., Cambon‐Bonavita, M., Cueff‐Gauchard, V., Durand, L., Gayet, N., & Zeppilli, D. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02246 · Cited by 29 · see citing works
Apremont, V., Cambon‐Bonavita, M., Cueff‐Gauchard, V., François, D., Pradillon, F., Corbari, L., & Zbinden, M. (2018) · PLoS ONE · doi:10.1371/journal.pone.0206084 · Cited by 29 · see citing works
Yang, S., Chiang, P., Hsu, T.-C., Kao, S., & Tang, S. (2016) · PLoS ONE · doi:10.1371/journal.pone.0150597 · Cited by 28 · see citing works
Ostock, C. Y., Lindenbach, D., Goldenberg, A. A., Kampton, E. B., & Bishop, C. (2014) · Behavioural Brain Research · doi:10.1016/j.bbr.2014.05.009 · Cited by 27 · see citing works
Audenhaege, L. V., Fariñas-Bermejo, A., Schultz, T. F., & Dover, C. L. V. (2019) · Deep Sea Research Part I Oceanographic Research Papers · doi:10.1016/j.dsr.2019.04.018 · Cited by 26 · see citing works
Watsuji, T., Nishizawa, M., Morono, Y., Hirayama, H., Kawagucci, S., Takahata, N., Sano, Y., & Takai, K. (2012) · PLoS ONE · doi:10.1371/journal.pone.0046282 · Cited by 25 · see citing works
Machon, J., Krieger, J., Meth, R., Zbinden, M., Ravaux, J., Montagné, N., Chertemps, T., & Harzsch, S. (2019) · eLife · doi:10.7554/elife.47550 · Cited by 24 · see citing works
Bennett, S. A., Dover, C. L. V., Breier, J. A., & Coleman, M. L. (2015) · Deep Sea Research Part I Oceanographic Research Papers · doi:10.1016/j.dsr.2015.06.005 · Cited by 24 · see citing works
Jiang, L., Liu, X., Dong, C., Huang, Z., Cambon‐Bonavita, M., Alain, K., Gu, L., Wang, S., & Shao, Z. (2020) · Applied and Environmental Microbiology · doi:10.1128/aem.02549-19 · Cited by 23 · see citing works
Ostock, C. Y., Hallmark, J., Palumbo, N. E., Bhide, N., Conti, M. M., George, J. A., & Bishop, C. (2015) · Neuropharmacology · doi:10.1016/j.neuropharm.2015.03.008 · Cited by 21 · see citing works
Chou, P.-H., Hu, M. Y., Guh, Y.-J., Wu, G.-C., Yang, S., Tandon, K., Shao, Y.-T., Lin, L., Chen, C., Tseng, K.-Y., et al. (2023) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2022.1973 · Cited by 18 · see citing works
The Toll/NF-κB pathway in cuttlefish symbiotic accessory nidamental gland
Cornet, V., Henry, J., Corre, E., Corguillé, G. L., & Zatylny‐Gaudin, C. (2015) · Developmental & Comparative Immunology · doi:10.1016/j.dci.2015.06.016 · Cited by 18 · see citing works
Sun, Q.-L., Zeng, Z., Chen, S., & Sun, L. (2016) · PLoS ONE · doi:10.1371/journal.pone.0154359 · Cited by 18 · see citing works
Cowart, D. A., Durand, L., Cambon-Bonavita, M.-A., & Arnaud-Haond, S. (2017) · PLoS ONE · doi:10.1371/journal.pone.0172543 · Cited by 17 · see citing works
Qi, L., Lian, C., Zhu, F.-C., Shi, M., & He, L. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.802888 · Cited by 17 · see citing works
Wang, X., Li, C., Wang, M., & Zheng, P. (2018) · PLoS ONE · doi:10.1371/journal.pone.0208887 · Cited by 17 · see citing works
New digestive symbiosis in the hydrothermal vent amphipoda Ventiella sulfuris
Corbari, L., Durand, L., Cambon‐Bonavita, M., Gaill, F., & Compère, P. (2012) · Comptes Rendus Biologies · doi:10.1016/j.crvi.2011.12.005 · Cited by 16 · see citing works
Streit, K., Bennett, S. A., Dover, C. L. V., & Coleman, M. L. (2015) · Deep Sea Research Part I Oceanographic Research Papers · doi:10.1016/j.dsr.2015.02.003 · Cited by 16 · see citing works
Konishi, M., Watsuji, T., Nakagawa, S., Hatada, Y., Takai, K., & Toyofuku, T. (2012) · Microbes and Environments · doi:10.1264/jsme2.me12070 · Cited by 16 · see citing works
Hui, M., Wang, A., Cheng, J., & Sha, Z. (2022) · PeerJ · doi:10.7717/peerj.13758 · Cited by 16 · see citing works
Patra, A. K., Cho, H. H., Kwon, Y. M., Kwon, K. K., Sato, T., Kato, C., Kang, S. G., & Kim, S. (2016) · Ocean Science Journal · doi:10.1007/s12601-016-0028-6 · Cited by 15 · see citing works
Rommevaux‐Jestin, C., Henri, P. A., Degboe, J., Chavagnac, V., Lesongeur, F., Godfroy, A., Boulart, C., Destrigneville, C., & Castillo, A. (2019) · Geochemistry Geophysics Geosystems · doi:10.1029/2018gc008107 · Cited by 14 · see citing works
Microbial epibiotic community of the deep-sea galatheid squat lobster Munidopsis alvisca
Leinberger, J., Milke, F., Christodoulou, M., Poehlein, A., Caraveo-Patiño, J., Teske, A., & Brinkhoff, T. (2022) · Scientific Reports · doi:10.1038/s41598-022-06666-x · Cited by 13 · see citing works
Le Bloa, S., Durand, L., Cueff- Gauchard, V., Le Bars, J., Taupin, L., Marteau, C., Bazire, A., & Cambon-Bonavita, M.-A. (2017) · PLoS ONE · doi:10.1371/journal.pone.0174338 · Cited by 12 · see citing works
Liu, X., Ye, S., Cheng, C.-Y., Li, H., Lu, B., Yang, W., & Yang, J. (2019) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2019.05.057 · Cited by 13 · see citing works
Burgaud, G., Meslet‐Cladière, L., Barbier, G., & Edgcomb, V. P. (2014) · Wiley eBooks · doi:10.1002/9783527681501.ch04 · Cited by 13 · see citing works
Li, Y., Guo, Z. G., & Ni, S. (2024) · Chemical Engineering Journal · doi:10.1016/j.cej.2024.150568 · Cited by 11 · see citing works
Zbinden, M., Gallet, A., Szafrański, K. M., Machon, J., Ravaux, J., Léger, N., & Duperron, S. (2018) · Frontiers in Marine Science · doi:10.3389/fmars.2018.00357 · Cited by 11 · see citing works
Qi, L., Shi, M., Zhu, F.-C., Lian, C., & He, L. (2023) · Frontiers in Microbiology · doi:10.3389/fmicb.2023.1179935 · Cited by 10 · see citing works
Versteegh, E. A. A., Dover, C. L. V., Audenhaege, L. V., & Coleman, M. L. (2022) · Deep Sea Research Part I Oceanographic Research Papers · doi:10.1016/j.dsr.2022.103915 · Cited by 10 · see citing works
Rubin‐Blum, M., Shemesh, E., Goodman‐Tchernov, B., Coleman, D. F., Ben‐Avraham, Z., & Tchernov, D. (2014) · Deep Sea Research Part I Oceanographic Research Papers · doi:10.1016/j.dsr.2014.04.014 · Cited by 9 · see citing works
Double temporal sparsity based accelerated reconstruction of compressively sensed resting-state fMRI
Aggarwal, P., & Gupta, A. (2017) · Computers in Biology and Medicine · doi:10.1016/j.compbiomed.2017.10.020 · Cited by 9 · see citing works
Makita, H., Nakagawa, S., Miyazaki, M., Nakamura, K., Inagaki, F., & Takai, K. (2012) · Archives of Microbiology · doi:10.1007/s00203-012-0814-1 · Cited by 9 · see citing works
Guéganton, M., Rouxel, O., Durand, L., Cueff‐Gauchard, V., Gayet, N., Pradillon, F., & Cambon‐Bonavita, M. (2022) · Frontiers in Marine Science · doi:10.3389/fmars.2022.903748 · Cited by 9 · see citing works
Sen, A., Andersen, L. W., Kjeldsen, K. U., Michel, L. N., Hong, W. L., Choquet, M., & Rasmussen, T. L. (2023) · Heliyon · doi:10.1016/j.heliyon.2023.e14232 · Cited by 7 · see citing works
Zhang, J., Zeng, Z., Chen, S., & Sun, L. (2017) · Journal of Marine Systems · doi:10.1016/j.jmarsys.2017.02.011 · Cited by 7 · see citing works
Liu, X., Ye, S., Li, H., Lu, B., Yu, Y., Fan, Y., Yang, W., & Yang, J. (2019) · BioMetals · doi:10.1007/s10534-019-00174-8 · Cited by 6 · see citing works
Methou, P., Hikosaka, M., Chen, C., Watanabe, H., Miyamoto, N., Makita, H., Takahashi, Y., & Jenkins, R. G. (2022) · Applied and Environmental Microbiology · doi:10.1128/aem.00185-22 · Cited by 6 · see citing works
Thomas, T. R. A., Das, A., & PonnaPakkam, L. (2018) · Geomicrobiology Journal · doi:10.1080/01490451.2018.1440035 · Cited by 6 · see citing works
Sabater‐Muñoz, B., & Toft, C. (2020) · Results and problems in cell differentiation · doi:10.1007/978-3-030-51849-3_3 · Cited by 5 · see citing works
Caro, A., Escalas, A., Bouvier, C., Grousset, E., Lautrédou-Audouy, N., Roques, C., Charmantier‐Daures, M., & Gros, O. (2012) · Marine Ecology Progress Series · doi:10.3354/meps09711 · Cited by 5 · see citing works
The Influence of Disclosure and Ethics Education on Perceptions of Financial Conflicts of Interest
Sacco, D. F., Bruton, S. V., Alen Hajnal, A., & Lustgraaf, C. J. N. (2014) · Science and Engineering Ethics · doi:10.1007/s11948-014-9572-6 · Cited by 4 · see citing works
Hydrothermal Vents: Oases at Depth
Monaco, A., & Prouzet, P. (2015) · doi:10.1002/9781119116219.ch6 · Cited by 4 · see citing works
Mou, A., Li, X., Li, Z., Qu, L., Dong, Y., Wang, Z., Zhang, X., & Xu, Q. (2025) · Microbiology Spectrum · doi:10.1128/spectrum.02959-24 · Cited by 3 · see citing works
Patra, A. K., Kwon, Y. M., & Yang, Y. (2022) · The Journal of Microbiology · doi:10.1007/s12275-022-2057-4 · Cited by 2 · see citing works
Honarbakhsh, M. (2011) · Rutgers University Community Repository (Rutgers University) · doi:10.7282/t3f18xtf
Methou, P. (2019) · theses.fr (ABES) · doi:10.70675/bf7aab7fzc361z40c2z9ac6z34c7f7b317db · Cited by 1 · see citing works
- Authors
- Hügler, M., Petersen, J. M., Dubilier, N., Imhoff, J. F., & Sievert, S. M.
- Affiliations
- GEOMAR Helmholtz Centre for Ocean Research Kiel (DE)
- Max Planck Institute for Marine Microbiology (DE)
- Woods Hole Oceanographic Institution (US)
- Corresponding author
- Sievert, Stefan M.
- Venue
- PLoS ONE
- Publisher
- Public Library of Science (PLoS)
- Published
- 2011-01-07
- Volume
- 6
- Issue
- 1
- Pages
- e16018
- ISSN
- 1932-6203 (ISSN-L)
- PMC
- PMC3017555
- OpenAlex
- W2025053207
- Cited by
- 80
- References
- 72
- Citations by year
- 2025: 1 · 2024: 1 · 2023: 3 · 2022: 7 · 2020: 4 · 2019: 7 · 2018: 5 · 2017: 9 · 2016: 5 · 2015: 11 · 2014: 8 · 2013: 6 · 2012: 8
- FWCI
- 7.61
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- PLoS ONE (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Helmholtz Centre for Ocean Research Kiel (GEOMAR) (acceptedVersion, other-oa)
- MPG.PuRe (Max Planck Society) (submittedVersion, other-oa)
- Open Access Server of the Woods Hole Scientific Community (Woods Hole Scientific Community) (submittedVersion, cc-by)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Max Planck Digital Library (submittedVersion)
- Figshare (submittedVersion, cc-by)
- Funders
- National Science Foundation (0452333)
- Deutsche Forschungsgemeinschaft
- Max-Planck-Gesellschaft
- Topics
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Physical Sciences › Earth and Planetary Sciences › Oceanography › Marine Biology and Ecology Research
- Physical Sciences › Environmental Science › Environmental Chemistry › Methane Hydrates and Related Phenomena
- Keywords
- Rimicaris exoculata, epibiotic bacteria, deep-sea hydrothermal vents, Mid-Atlantic Ridge, sulfur-oxidizing bacteria, sulfur-reducing bacteria, reductive tricarboxylic acid cycle, autotrophic carbon fixation, hydrogen oxidation, hydrogenase, bacterial community composition, gene function analysis
- MeSH terms
- Animals, Carbon, Energy Metabolism, Hydrogen, Oceans and Seas, Sulfur, Symbiosis, Gammaproteobacteria, Epsilonproteobacteria, Decapoda, Carbon Cycle
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