The DOI matches its Crossref record; 32 of the 32 references it cites were found in a registry or an index.
Human macrophage activation programs induced by bacterial pathogens
Abstract
Understanding the response of innate immune cells to pathogens may provide insights to host defenses and the tactics used by pathogens to circumvent these defenses. We used DNA microarrays to explore the responses of human macrophages to a variety of bacteria. Macrophages responded to a broad range of bacteria with a robust, shared pattern of gene expression. The shared response includes genes encoding receptors, signal transduction molecules, and transcription factors. This shared activation program transforms the macrophage into a cell primed to interact with its environment and to mount an immune response. Further study revealed that the activation program is induced by bacterial components that are Toll-like receptor agonists, including lipopolysaccharide, lipoteichoic acid, muramyl dipeptide, and heat shock proteins. Pathogen-specific responses were also apparent in the macrophage expression profiles. Analysis of Mycobacterium tuberculosis -specific responses revealed inhibition of interleukin-12 production, suggesting one means by which this organism survives host defenses. These results improve our understanding of macrophage defenses, provide insights into mechanisms of pathogenesis, and suggest targets for therapeutic intervention.
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“Despite a number of genomic studies analyzing macrophage activation in response to bacteria, TLR ligands, and M1 or M2 stimuli, to date there have been no attempts to reconcile these observations by building new and integrative models of macrophage activation”
From Transcriptome-Based Network Analysis Reveals a Spectrum Model of Human Macrophage Activation (2014) · cites this paper as Nau et al., 2002
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Cites
Cluster analysis and display of genome-wide expression patterns
Eisen, M. B., Spellman, P. T., Brown, P. O., & Botstein, D. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.25.14863 · Cited by 16,184
Defective LPS Signaling in C3H/HeJ and C57BL/10ScCr Mice: Mutations in Tlr4 Gene
Poltorak, A., He, X., Smirnova, I., Liu, M.-Y., Huffel, C. V., Du, X., Birdwell, D., Alejos, E., Silva, M., Galanos, C., et al. (1998) · Science · doi:10.1126/science.282.5396.2085 · Cited by 7,631
Toll-like receptors: critical proteins linking innate and acquired immunity
Akira, S., Takeda, K., & Kaisho, T. (2001) · Nature Immunology · doi:10.1038/90609 · Cited by 4,777
Expression monitoring by hybridization to high-density oligonucleotide arrays
Lockhart, D. J., Dong, H., Byrne, M. C., Follettie, M. T., Gallo, M. V., Chee, M. S., Mittmann, M., Wang, C., Kobayashi, M., Norton, H., et al. (1996) · Nature Biotechnology · doi:10.1038/nbt1296-1675 · Cited by 2,841
Toll-like Receptor-4 Mediates Lipopolysaccharide-induced Signal Transduction
Chow, J. C., Young, D. W., Golenbock, D. T., Christ, W. J., & Gusovsky, F. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.16.10689 · Cited by 1,924
Peptidoglycan- and Lipoteichoic Acid-induced Cell Activation Is Mediated by Toll-like Receptor 2
Schwandner, R., Dziarski, R., Wesche, H., Rothe, M., & Kirschning, C. J. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.25.17406 · Cited by 1,704
Ohashi, K., Burkart, V., Flohé, S., & Kolb, H. (2000) · The Journal of Immunology · doi:10.4049/jimmunol.164.2.558 · Cited by 1,606
Yoshimura, A., Lien, E., Ingalls, R. R., Tuomanen, E., Dziarski, R., & Golenbock, D. (1999) · The Journal of Immunology · doi:10.4049/jimmunol.163.1.1 · Cited by 1,234
Anderson, P. C. (1999) · JAMA · doi:10.1001/jama.281.24.2351 · Cited by 1,009
IL-12-Deficient Mice Are Defective in IFNγ Production and Type 1 Cytokine Responses
Magram, J., Connaughton, S. E., Warrier, R. R., Carvajal, D. M., Wu, C.-Y., Ferrante, J., Stewart, C., Sarmiento, U., Faherty, D. A., & Gately, M. K. (1996) · Immunity · doi:10.1016/s1074-7613(00)80413-6 · Cited by 989
Impairment of Mycobacterial Immunity in Human Interleukin-12 Receptor Deficiency
Altare, F., Durandy, A., Lammas, D. A., Emile, J., Lamhamedi‐Cherradi, S., Deist, F. L., Drysdale, P., Jouanguy, E., Döffinger, R., Bernaudin, F., et al. (1998) · Science · doi:10.1126/science.280.5368.1432 · Cited by 843
Severe Mycobacterial and Salmonella Infections in Interleukin-12 Receptor-Deficient Patients
de Jong, R., Altare, F., Haagen, I.-A., Elferink, D. G., de Boer, T., Vriesman, P. J. C. V. B., Kabel, P. J., Draaisma, J. M. T., van Dissel, J. T., Kroon, F. P., et al. (1998) · Science · doi:10.1126/science.280.5368.1435 · Cited by 819
Vabulas, R. M., Ahmad-Nejad, P., da Costa, C., Miethke, T., Kirschning, C. J., Häcker, H., & Wagner, H. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m103217200 · Cited by 805
Toll-like receptor 4 imparts ligand-specific recognition of bacterial lipopolysaccharide
Lien, E., Means, T. K., Heine, H., Yoshimura, A., Kusumoto, S., Fukase, K., Fenton, M. J., Oikawa, M., Qureshi, N., Monks, B., et al. (2000) · Journal of Clinical Investigation · doi:10.1172/jci8541 · Cited by 727
Cooper, A. M., Magram, J., Ferrante, J., & Orme, I. M. (1997) · The Journal of Experimental Medicine · doi:10.1084/jem.186.1.39 · Cited by 715
Giacomini, E., Iona, E., Ferroni, L., Miettinen, M., Fattorini, L., Orefici, G., Julkunen, I., & Coccia, E. M. (2001) · The Journal of Immunology · doi:10.4049/jimmunol.166.12.7033 · Cited by 433
Altare, F., Lammas, D., Revy, P., Jouanguy, E., Döffinger, R., Lamhamedi, S., Drysdale, P., Scheel-Toellner, D., Girdlestone, J., Darbyshire, P., et al. (1998) · Journal of Clinical Investigation · doi:10.1172/jci4950 · Cited by 413
IL-12 increases resistance of BALB/c mice to Mycobacterium tuberculosis infection
Flynn, J. L., Goldstein, M. M., Triebold, K. J., Sypek, J., Wolf, S., & Bloom, B. R. (1995) · The Journal of Immunology · doi:10.4049/jimmunol.155.5.2515 · Cited by 324
Carrera, L., Gazzinelli, R. T., Badolato, R., Hieny, S. E., Müller, W., Kühn, R., & Sacks, D. L. (1996) · The Journal of Experimental Medicine · doi:10.1084/jem.183.2.515 · Cited by 312
Regulation of Interleukin-12 by Complement Receptor 3 Signaling
Marth, T., & Kelsall, B. L. (1997) · The Journal of Experimental Medicine · doi:10.1084/jem.185.11.1987 · Cited by 281
A chemoattractant cytokine associated with granulomas in tuberculosis and silicosis
Nau, G. J., Guilfoile, P. G., Chupp, G. L., Berman, J. S., Kim, S. J., Kornfeld, H., & Young, R. A. (1997) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.94.12.6414 · Cited by 190
Self-citationPathogenic trickery: deception of host cell processes
Knodler, L. A., Celli, J., & Finlay, B. B. (2001) · Nature Reviews Molecular Cell Biology · doi:10.1038/35085062 · Cited by 157
Exploitation of cellular signaling and regulatory pathways by human cytomegalovirus
Fortunato, E. A., McElroy, A. K., Sánchez, V., & Spector, D. H. (2000) · Trends in Microbiology · doi:10.1016/s0966-842x(00)01699-1 · Cited by 137
Activity of HspE7, a Novel Immunotherapy, in Patients with Anogenital Warts
Goldstone, S. E., Palefsky, J. M., Winnett, M. T., & Neefe, J. R. (2002) · Diseases of the Colon & Rectum · doi:10.1007/s10350-004-6229-6 · Cited by 100
Interleukin-7 or Interleukin-15 Enhances Survival ofMycobacterium tuberculosis-Infected Mice
Maeurer, M. J., Trinder, P. K. E., Hommel, G., Walter, W., Freitag, K., Atkins, D., & Störkel, S. (2000) · Infection and Immunity · doi:10.1128/iai.68.5.2962-2970.2000 · Cited by 99
Evasion of host cell defense mechanisms by pathogenic bacteria
Pieters, J. (2001) · Current Opinion in Immunology · doi:10.1016/s0952-7915(00)00179-5 · Cited by 87
IL-12 Promotes Drug-Induced Clearance of Mycobacterium avium Infection in Mice
Doherty, T. M., & Sher, A. (1998) · The Journal of Immunology · doi:10.4049/jimmunol.160.11.5428 · Cited by 62
Post, F. A., Manca, C., Neyrolles, O., Ryffel, B., Young, D. B., & Kaplan, G. (2001) · Infection and Immunity · doi:10.1128/iai.69.3.1433-1439.2001 · Cited by 58
Cytokine therapy of mycobacterial infections.
Holland, S. M. (2000) · PubMed · Cited by 52
Interleukin-12 as successful adjuvant in tuberculosis treatment
Greinert, U., Ernst, M. E., Schlaak, M. S., & Entzian, P. (2001) · European Respiratory Journal · doi:10.1183/09031936.01.17510490 · Cited by 50
Chu, N., Wu, H., Wu, T. ‐., Boux, L., Mizzen, L., & Siegel, M. I. (2000) · Cell Stress and Chaperones · Cited by 42
Hamerman, J. A., & Aderem, A. A. (2001) · The Journal of Immunology · doi:10.4049/jimmunol.167.4.2227 · Cited by 30
Research works printed but not linked: 3
- 10.1379/1466-1268(2000)005<0401:IOAHPT>2.0.CO;2 · doi:10.1379/1466-1268(2000)005
- Goldstone S. E. Palefsky J. M. Winnett M. T. & Neefe J. R. (2002) Dis. Colon Rectum in press.
- S M Holland Adv Intern Med 45, 431–452 (2000).
Cited by
Alternative activation of macrophages
Gordon, S. (2003) · Nature Reviews Immunology · doi:10.1038/nri978 · Cited by 6,189
The M1 and M2 paradigm of macrophage activation: Time for reassessment
Martinez, F. O., & Gordon, S. (2014) · F1000Prime Reports · doi:10.12703/p6-13 · Cited by 4,689
Macrophages, inflammation, and insulin resistance
Olefsky, J. M., & Glass, C. K. (2010) · Annual Review of Physiology · doi:10.1146/annurev-physiol-021909-135846 · Cited by 2,733
Transcriptional regulation of macrophage polarization: enabling diversity with identity
Lawrence, T., & Natoli, G. (2011) · Nature Reviews Immunology · doi:10.1038/nri3088 · Cited by 2,284
Transcriptome-Based Network Analysis Reveals a Spectrum Model of Human Macrophage Activation
Xue, J., Schmidt, S. V., Sander, J., Draffehn, A., Krebs, W., Quester, I., De Nardo, D., Gohel, T. D., Emde, M., Schmidleithner, L., et al. (2014) · Immunity · doi:10.1016/j.immuni.2014.01.006 · Cited by 2,210
Metadata
- Authors
- Nau, G. J., Richmond, J. F. L., Schlesinger, A., Jennings, E. G., Lander, E. S., & Young, R. A.
- Affiliations
- Whitehead Institute, 9 Cambridge Center, Cambridge, MA 02142; Infectious Disease Unit, Massachusetts General Hospital, Boston, MA 02114; and Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2002-01-22
- Volume
- 99
- Issue
- 3
- Pages
- 1503-1508
- ISSN
- 0027-8424
- 1091-6490
- Cited by
- 568
- References
- 32
- Language
- en
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