Drosophila Golgi membrane protein Ema promotes autophagosomal growth and function
Open accessAbstract
Autophagy is a self-degradative process in which cellular material is enclosed within autophagosomes and trafficked to lysosomes for degradation. Autophagosomal biogenesis is well described; however mechanisms controlling the growth and ultimate size of autophagosomes are unclear. Here we demonstrate that the Drosophila membrane protein Ema is required for the growth of autophagosomes. In an ema mutant, autophagosomes form in response to starvation and developmental cues, and these autophagosomes can mature into autolysosomes; however the autophagosomes are very small, and autophagy is impaired. In fat body cells, Ema localizes to the Golgi complex and is recruited to the membrane of autophagosomes in response to starvation. The Drosophila Golgi protein Lva also is recruited to the periphery of autophagosomes in response to starvation, and this recruitment requires ema . Therefore, we propose that Golgi is a membrane source for autophagosomal growth and that Ema facilitates this process. Clec16A, the human ortholog of Ema, is a candidate autoimmune susceptibility locus. Expression of Clec16A can rescue the autophagosome size defect in the ema mutant, suggesting that regulation of autophagosome morphogenesis may be a fundamental function of this gene family.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Studies in Drosophila with the homologue of Clec16a, ema, demonstrate the importance of the gene to the autophagy pathway and protein trafficking in the endosomal pathway.
“Studies in Drosophila with the homologue of Clec16a, ema, demonstrate the importance of the gene to the autophagy pathway and protein trafficking in the endosomal pathway89.”
From Clec16a is Critical for Autolysosome Function and Purkinje Cell Survival (2016) · cites this paper as [9]
In ema-deficient Drosophila cells there is no observed defect in fusion between lysosomes and autophagosomes.
“While in ema-deficient Drosophila cells there is no observed defect in fusion between lysosomes and autophagosomes, reduced fusion has been suggested in studies of mitophagy induction in islet cells lacking Clec16a916.”
From Clec16a is Critical for Autolysosome Function and Purkinje Cell Survival (2016) · cites this paper as [9]
Flies mutant for ema exhibit decreased turnover of p62 and decreased mitophagy.
“Flies mutant for ema exhibit decreased turnover of p62 and decreased mitophagy9.”
From Clec16a is Critical for Autolysosome Function and Purkinje Cell Survival (2016) · cites this paper as [9]
The Drosophila CLEC16A homolog ema is required for efficient recruitment of the Golgi complex protein Lava lamp (Lva) to autophagic structures in fat body cells.
“The Drosophila CLEC16A homolog ema is required for efficient recruitment of the Golgi complex protein Lava lamp (Lva) to autophagic structures in fat body cells”
From Clec16a is Critical for Autolysosome Function and Purkinje Cell Survival (2016) · cites this paper as [9]
ema is required for proper endosomal maturation in Garland cells.
“and for proper endosomal maturation in Garland cells947.”
From Clec16a is Critical for Autolysosome Function and Purkinje Cell Survival (2016) · cites this paper as [9]
Ema plays a role in autophagosomal growth but fusion between the autophagosome and the lysosome is unaltered in the absence of the gene.
“These studies supported the concept that Ema played a role in autophagosomal growth but that fusion between the autophagosome and the lysosome was unaltered in the absence of the gene9.”
From Clec16a is Critical for Autolysosome Function and Purkinje Cell Survival (2016) · cites this paper as [9]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
The Wellcome Trust Case Control Consortium, Management Committee, Burton, P. R., Clayton, D. G., Cardon, L. R., Craddock, N., Deloukas, P., Duncanson, A., Kwiatkowski, D. P., McCarthy, M. I., et al. (2007) · Nature · doi:10.1038/nature05911 · Cited by 9,442 · see citing works
LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing.
Kabeya, Y., Mizushima, N., Ueno, T., Yamamoto, A., Kirisako, T., Noda, T., Kominami, E., Ohsumi, Y., & Yoshimori, T. (2000) · The EMBO Journal · doi:10.1093/emboj/19.21.5720 · Cited by 6,605 · see citing works
Autophagy fights disease through cellular self-digestion
Mizushima, N., Levine, B., Cuervo, A. M., & Klionsky, D. J. (2008) · Nature · doi:10.1038/nature06639 · Cited by 6,452 · see citing works
Regulation mechanisms and signaling pathways of autophagy
He, C., & Klionsky, D. J. (2009) · Annual Review of Genetics · doi:10.1146/annurev-genet-102808-114910 · Cited by 3,609 · see citing works
Autophagy in immunity and inflammation
Levine, B., Mizushima, N., & Virgin, H. W. (2011) · Nature · doi:10.1038/nature09782 · Cited by 3,289 · see citing works
The Wellcome Trust Case Control Consortium, U.K.
Mossman, K. (2008) · Scientific American · doi:10.1038/scientificamerican0108-42a · Cited by 2,714 · see citing works
Impairment of starvation-induced and constitutive autophagy in <i>Atg7</i> -deficient mice
Komatsu, M., Waguri, S., Ueno, T., Iwata, J., Murata, S., Tanida, I., Ezaki, J., Mizushima, N., Ohsumi, Y., Uchiyama, Y., et al. (2005) · The Journal of Cell Biology · doi:10.1083/jcb.200412022 · Cited by 2,331 · see citing works
Mizushima, N., Yamamoto, A., Matsui, M., Yoshimori, T., & Ohsumi, Y. (2003) · Molecular Biology of the Cell · doi:10.1091/mbc.e03-09-0704 · Cited by 2,323 · see citing works
Axe, E. L., Walker, S. A., Manifava, M., Chandra, P., Roderick, H. L., Habermann, A., Griffiths, G., & Ktistakis, N. T. (2008) · The Journal of Cell Biology · doi:10.1083/jcb.200803137 · Cited by 1,885 · see citing works
Risk Alleles for Multiple Sclerosis Identified by a Genomewide Study
(2007) · New England Journal of Medicine · doi:10.1056/nejmoa073493 · Cited by 1,746 · see citing works
Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes
Finland, G. O. T. 1. D. I., Todd, J. A., the Wellcome Trust Case Control Consortium, Walker, N. M., Cooper, J. D., Smyth, D. J., Downes, K., Plagnol, V., Bailey, R., Nejentsev, S., et al. (2007) · Nature Genetics · doi:10.1038/ng2068 · Cited by 1,456 · see citing works
Mitochondria Supply Membranes for Autophagosome Biogenesis during Starvation
Hailey, D. W., Rambold, A. S., Satpute‐Krishnan, P., Mitra, K., Sougrat, R., Kim, P. K., & Lippincott‐Schwartz, J. (2010) · Cell · doi:10.1016/j.cell.2010.04.009 · Cited by 1,419 · see citing works
Nakatogawa, H., Ichimura, Y., & Ohsumi, Y. (2007) · Cell · doi:10.1016/j.cell.2007.05.021 · Cited by 1,215 · see citing works
p62 at the crossroads of autophagy, apoptosis, and cancer
Moscat, J., & Diaz-Meco, M. T. (2009) · Cell · doi:10.1016/j.cell.2009.05.023 · Cited by 1,073 · see citing works
Role and Regulation of Starvation-Induced Autophagy in the Drosophila Fat Body
Scott, R. C., Schuldiner, O., & Neufeld, T. P. (2004) · Developmental Cell · doi:10.1016/j.devcel.2004.07.009 · Cited by 963 · see citing works
Plasma membrane contributes to the formation of pre-autophagosomal structures
Ravikumar, B., Moreau, K., Jahreiss, L., Puri, C., & Rubinsztein, D. C. (2010) · Nature Cell Biology · doi:10.1038/ncb2078 · Cited by 902 · see citing works
Endogenous MHC Class II Processing of a Viral Nuclear Antigen After Autophagy
Paludan, C., Schmid, D., Landthaler, M., Vockerodt, M., Kube, D., Tuschl, T., & Münz, C. (2005) · Science · doi:10.1126/science.1104904 · Cited by 860 · see citing works
Starvation and ULK1-dependent cycling of mammalian Atg9 between the TGN and endosomes
Young, A. R. J., Chan, E. Y. W., Hu, X. W., Köchl, R., Crawshaw, S. G., High, S., Hailey, D. W., Lippincott-Schwartz, J., & Tooze, S. A. (2006) · Journal of Cell Science · doi:10.1242/jcs.03172 · Cited by 815 · see citing works
Beclin–phosphatidylinositol 3‐kinase complex functions at the trans‐Golgi network
Kihara, A., Kabeya, Y., Ohsumi, Y., & Yoshimori, T. (2001) · The EMBO Reports · doi:10.1093/embo-reports/kve061 · Cited by 813 · see citing works
Liang, C., Lee, J.-S., Inn, K.-S., Gack, M. U., Li, Q., Roberts, E. A., Vergne, I., Deretic, V., Feng, P., Akazawa, C., et al. (2008) · Nature Cell Biology · doi:10.1038/ncb1740 · Cited by 792 · see citing works
Atg8 Controls Phagophore Expansion during Autophagosome Formation
Xie, Z., Nair, U., & Klionsky, D. J. (2008) · Molecular Biology of the Cell · doi:10.1091/mbc.e07-12-1292 · Cited by 753 · see citing works
Schmid, D., Pypaert, M., & Münz, C. (2007) · Immunity · doi:10.1016/j.immuni.2006.10.018 · Cited by 732 · see citing works
Growth Arrest and Autophagy Are Required for Salivary Gland Cell Degradation in Drosophila
Berry, D. L., & Baehrecke, E. H. (2007) · Cell · doi:10.1016/j.cell.2007.10.048 · Cited by 602 · see citing works
The origin of the autophagosomal membrane
Tooze, S. A., & Yoshimori, T. (2010) · Nature Cell Biology · doi:10.1038/ncb0910-831 · Cited by 585 · see citing works
A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene
Hakonarson, H., Grant, S. F. A., Bradfield, J. P., Marchand, L., Kim, C. E., Glessner, J. T., Grabs, R., Casalunovo, T., Taback, S. P., Frackelton, E. C., et al. (2007) · Nature · doi:10.1038/nature06010 · Cited by 542 · see citing works
Autophagy in thymic epithelium shapes the T-cell repertoire and is essential for tolerance
Nedjic, J., Aichinger, M., Emmerich, J., Mizushima, N., & Klein, L. (2008) · Nature · doi:10.1038/nature07208 · Cited by 533 · see citing works
Physiological significance of selective degradation of p62 by autophagy
Komatsu, M., & Ichimura, Y. (2010) · FEBS Letters · doi:10.1016/j.febslet.2010.02.017 · Cited by 516 · see citing works
SNARE Proteins Are Required for Macroautophagy
Nair, U., Jotwani, A. R., Geng, J., Gammoh, N., Richerson, D. N., Yen, W.-L., Griffith, J. M., Nag, S., Wang, K., Moss, T. J., et al. (2011) · Cell · doi:10.1016/j.cell.2011.06.022 · Cited by 434 · see citing works
An Atg1/Atg13 Complex with Multiple Roles in TOR-mediated Autophagy Regulation
Chang, Y.-Y., & Neufeld, T. P. (2009) · Molecular Biology of the Cell · doi:10.1091/mbc.e08-12-1250 · Cited by 418 · see citing works
Autophagosome Precursor Maturation Requires Homotypic Fusion
Moreau, K., Ravikumar, B., Renna, M., Puri, C., & Rubinsztein, D. C. (2011) · Cell · doi:10.1016/j.cell.2011.06.023 · Cited by 382 · see citing works
Nezis, I. P., Simonsen, A., Sagona, A. P., Finley, K., Gaumer, S., Contamine, D., Rusten, T. E., Stenmark, H., & Brech, A. (2008) · The Journal of Cell Biology · doi:10.1083/jcb.200711108 · Cited by 370 · see citing works
Ishihara, N., Hamasaki, M., Yokota, S., Suzuki, K., Kamada, Y., Kihara, A., Yoshimori, T., Noda, T., & Ohsumi, Y. (2001) · Molecular Biology of the Cell · doi:10.1091/mbc.12.11.3690 · Cited by 368 · see citing works
ESCRTs and Fab1 Regulate Distinct Steps of Autophagy
Rusten, T. E., Vaccari, T., Lindmo, K., Rodahl, L. M., Nezis, I. P., Sem-Jacobsen, C., Wendler, F., Vincent, J., Brech, A., Bilder, D. H., et al. (2007) · Current Biology · doi:10.1016/j.cub.2007.09.032 · Cited by 332 · see citing works
The class III PI(3)K Vps34 promotes autophagy and endocytosis but not TOR signaling in Drosophila
Juhász, G., Hill, J. H., Yan, Y., Sass, M., Baehrecke, E. H., Backer, J., & Neufeld, T. P. (2008) · The Journal of Cell Biology · doi:10.1083/jcb.200712051 · Cited by 311 · see citing works
THE STRUCTURE AND FORMATION OF PROTEIN GRANULES IN THE FAT BODY OF AN INSECT
Locke, M., & Collins, J. V. (1965) · The Journal of Cell Biology · doi:10.1083/jcb.26.3.857 · Cited by 298 · see citing works
Lava Lamp, a Novel Peripheral Golgi Protein, Is Required for Drosophila melanogaster Cellularization
Sisson, J. C., Field, C. M., Ventura, R., Royou, A., & Sullivan, W. (2000) · The Journal of Cell Biology · doi:10.1083/jcb.151.4.905 · Cited by 277 · see citing works
Satoh, A. K., O’Tousa, J. E., Ozaki, K., & Ready, D. F. (2005) · Development · doi:10.1242/dev.01704 · Cited by 274 · see citing works
DrosophilaVps16A is required for trafficking to lysosomes and biogenesis of pigment granules
Pulipparacharuvil, S., Akbar, M. A., Ray, S., Sevrioukov, E. A., Haberman, A. S., Rohrer, J., & Krämer, H. (2005) · Journal of Cell Science · doi:10.1242/jcs.02502 · Cited by 236 · see citing works
Manfruelli, P., Reichhart, J., Steward, R., Hoffmann, J. A., & Lemaître, B. (1999) · EMBO Journal · doi:10.1093/emboj/18.12.3380 · Cited by 228 · see citing works
Yen, W.-L., Shintani, T., Nair, U., Cao, Y., Richardson, B. C., Li, Z., Hughson, F. M., Baba, M., & Klionsky, D. J. (2010) · The Journal of Cell Biology · doi:10.1083/jcb.200904075 · Cited by 206 · see citing works
van der Vaart, A., Griffith, J. M., & Reggiori, F. (2010) · Molecular Biology of the Cell · doi:10.1091/mbc.e09-04-0345 · Cited by 185 · see citing works
Current knowledge of the pre‐autophagosomal structure (PAS)
Suzuki, K., & Ohsumi, Y. (2010) · FEBS Letters · doi:10.1016/j.febslet.2010.02.001 · Cited by 182 · see citing works
Post-Golgi Sec Proteins Are Required for Autophagy in Saccharomyces cerevisiae
Geng, J., Nair, U., Yasumura-Yorimitsu, K., & Klionsky, D. J. (2010) · Molecular Biology of the Cell · doi:10.1091/mbc.e09-11-0969 · Cited by 179 · see citing works
Reggiori, F., Wang, C.-W., Nair, U., Shintani, T., Abeliovich, H., & Klionsky, D. J. (2004) · Molecular Biology of the Cell · doi:10.1091/mbc.e03-07-0479 · Cited by 128 · see citing works
The golgin Lava lamp mediates dynein-based Golgi movements during Drosophila cellularization
Papoulas, O., Hays, T. S., & Sisson, J. C. (2005) · Nature Cell Biology · doi:10.1038/ncb1264 · Cited by 102 · see citing works
Meiling-Wesse, K., Epple, U. D., Krick, R., Barth, H., Appelles, A., Voss, C., Eskelinen, E., & Thumm, M. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m501701200 · Cited by 99 · see citing works
dGRASP localization and function in the early exocytic pathway in Drosophila S2 cells.
Kondylis, V., Spoorendonk, K. M., & Rabouille, C. (2005) · Molecular Biology of the Cell · doi:10.1091/mbc.e04-10-0938 · Cited by 89 · see citing works
Arsham, A. M., & Neufeld, T. P. (2009) · PLoS ONE · doi:10.1371/journal.pone.0006068 · Cited by 85 · see citing works
Kim, S., Wairkar, Y. P., Daniels, R. W., & DiAntonio, A. (2010) · Journal of Cell Biology · doi:10.1083/jcb.200911126 · Cited by 82 · see citing works
Self-citationWyers, F., Petitjean, A. M., Dru, P., Gay, P., & Contamine, D. (1995) · Journal of Virology · doi:10.1128/jvi.69.7.4463-4470.1995 · Cited by 34 · see citing works
Chapter Thirty‐Six Genetic Manipulation and Monitoring of Autophagy in Drosophila
Neufeld, T. P. (2008) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(08)03236-9 · Cited by 17 · see citing works
A Ubiquitin-like Protein Involved in Membrane Fusion
Subramani, S. E., & Farré, J. (2007) · Cell · doi:10.1016/j.cell.2007.06.041 · Cited by 13 · see citing works
Flagged first, then by citations
Research works printed but not linked: 5
- Proc Natl Acad Sci U S A. 2012 May 1;109(18):6800–6801.
- [1]Kim S, Wairkar YP, Daniels RW, DiAntonio A. The novel endosomal membrane protein Ema interacts with the class C Vps-HOPS complex to promote endosomal maturation. J Cell Biol. 2010;188:717–734. doi: 10.1083/jcb.200911126. [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI · Paper page
- [2]Hakonarson H, et al. A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene. Nature. 2007;448:591–594. doi: 10.1038/nature06010. [DOI] [PubMed] [Google Scholar] · DOI · Paper page
- [3]Hafler DA, et al. International Multiple Sclerosis Genetics Consortium Risk alleles for multiple sclerosis identified by a genomewide study. N Engl J Med. 2007;357:851–862. doi: 10.1056/NEJMoa073493. [DOI] [PubMed] [Google Scholar] · DOI · Paper page
- [4]Locke M, Collins JV. the structure and formation of protein granules in the fat body of an insect. J Cell Biol. 1965;26:857–884. doi: 10.1083/jcb.26.3.857. [DOI] [PMC free article] [PubMed] [Google Scholar] · DOI
Cited by
Sorted by citations
Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).
Klionsky, D. J., Abdelmohsen, K., Abe, A., Abedin, M. J., Abeliovich, H., Acevedo Arozena, A., Adachi, H., Adams, C. M., Adams, P. D., Adeli, K., et al. (2016) · Autophagy · doi:10.1080/15548627.2015.1100356 · Cited by 5,894 · see citing works
Klionsky, D. J., Abdel-Aziz, A. K., Abdelfatah, S., Abdellatif, M., Abdoli, A., Abel, S., Abeliovich, H., Abildgaard, M. H., Abudu, Y. P., Acevedo-Arozena, A., et al. (2021) · Autophagy · doi:10.1080/15548627.2020.1797280 · Cited by 2,622 · see citing works
Self-citationToward a Comprehensive Map of the Effectors of Rab GTPases
Gillingham, A. K., Sinka, R., Torres, I. L., Lilley, K. S., & Munro, S. (2014) · Developmental Cell · doi:10.1016/j.devcel.2014.10.007 · Cited by 283 · see citing works
The Diabetes Susceptibility Gene Clec16a Regulates Mitophagy
Soleimanpour, S. A., Gupta, A., Bakay, M., Ferrari, A. M., Groff, D. N., Fadista, J., Spruce, L. A., Kushner, J. A., Groop, L., Seeholzer, S. H., et al. (2014) · Cell · doi:10.1016/j.cell.2014.05.016 · Cited by 211 · see citing works
Ultrastructural relationship of the phagophore with surrounding organelles
Biazik, J. M., Ylä‐Anttila, P., Vihinen, H., Jokitalo, E., & Eskelinen, E. (2015) · Autophagy · doi:10.1080/15548627.2015.1017178 · Cited by 145 · see citing works
Membrane Trafficking in Autophagy
Søreng, K., Neufeld, T. P., & Simonsen, A. (2017) · International review of cytology · doi:10.1016/bs.ircmb.2017.07.001 · Cited by 110 · see citing works
Schuster, C., Gerold, K. D., Schober, K., Probst, L., Boerner, K., Kim, M., Ruckdeschel, A. M., Serwold, T. F., & Kissler, S. (2015) · Immunity · doi:10.1016/j.immuni.2015.04.011 · Cited by 104 · see citing works
Molecular signaling toward mitophagy and its physiological significance
Feng, D., Liu, L., Zhu, Y., & Chen, Q. (2013) · Experimental Cell Research · doi:10.1016/j.yexcr.2013.03.034 · Cited by 97 · see citing works
Ichino, T., Fuji, K., Ueda, H., Takahashi, H., Koumoto, Y., Takagi, J., Tamura, K., Sasaki, R., Aoki, K., Shimada, T., et al. (2014) · The Plant Journal · doi:10.1111/tpj.12637 · Cited by 83 · see citing works
Genes Involved in Type 1 Diabetes: An Update
Bakay, M. A., Pandey, R., & Hakonarson, H. H. (2013) · Genes · doi:10.3390/genes4030499 · Cited by 78 · see citing works
Pearson, G. L., Chai, B., Vozheiko, T. D., Liu, X., Kandarpa, M., Piper, R. C., & Soleimanpour, S. A. (2017) · Diabetes · doi:10.2337/db17-0321 · Cited by 73 · see citing works
Li, J., Jørgensen, S. F., Maggadottir, S. M., Bakay, M. A., Warnatz, K., Glessner, J., Pandey, R., Salzer, U., Schmidt, R. E., Pérez, E., et al. (2015) · Nature Communications · doi:10.1038/ncomms7804 · Cited by 72 · see citing works
Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)
Klionsky, D. J., Abdelmohsen, K., Abe, A., Abedin, J., Abeliovich, H., Acevedo‐Arozena, A., Adachi, H., Adams, C. M., Adams, P. D., Adeli, K., et al. (2016) · Kölner Universitäts PublikationsServer (Universität zu Köln) · doi:10.5167/uzh-131237 · Cited by 69 · see citing works
Multiple sclerosis-associated CLEC16A controls HLA class II expression via late endosome biogenesis
van Luijn, M. M., Kreft, K. L., Jongsma, M. L., Mes, S. W., Wierenga-Wolf, A. F., van Meurs, M., Melief, M.-J., der Kant, R. V., Janssen, L., Janssen, H., et al. (2015) · Brain · doi:10.1093/brain/awv080 · Cited by 68 · see citing works
The Genetic Contribution to Type 1 Diabetes
Bakay, M. A., Pandey, R., Grant, S. F. A., & Hakonarson, H. H. (2019) · Current Diabetes Reports · doi:10.1007/s11892-019-1235-1 · Cited by 67 · see citing works
The pancreatic β cell and type 1 diabetes: innocent bystander or active participant?
Soleimanpour, S. A., & Stoffers, D. A. (2013) · Trends in Endocrinology and Metabolism · doi:10.1016/j.tem.2013.03.005 · Cited by 60 · see citing works
Pandey, R., Bakay, M. A., & Hakonarson, H. H. (2023) · Frontiers in Immunology · doi:10.3389/fimmu.2023.1271102 · Cited by 58 · see citing works
Atg9 is required for intraluminal vesicles in amphisomes and autolysosomes
Bader, C. A., Shandala, T., Ng, Y., Johnson, I. R., & Brooks, D. A. (2015) · Biology Open · doi:10.1242/bio.013979 · Cited by 47 · see citing works
Human CLEC16A regulates autophagy through modulating mTOR activity
Tam, R. C. Y., Li, M., Gao, Y., Pang, Y. T., Yan, S., Ge, W., Lau, C. S., & Chan, V. S. F. (2017) · Experimental Cell Research · doi:10.1016/j.yexcr.2017.02.017 · Cited by 32 · see citing works
Clec16a is Critical for Autolysosome Function and Purkinje Cell Survival
Redmann, V., Lamb, C. A., Hwang, S., Orchard, R. C., Kim, S., Razi, M., Milam, A., Park, S., Yokoyama, C. C., Kambal, A., et al. (2016) · Scientific Reports · doi:10.1038/srep23326 · Cited by 31 · see citing works
Self-citationCLEC16A in astrocytes promotes mitophagy and limits pathology in a multiple sclerosis mouse model
Kadowaki, A., Wheeler, M. A., Li, Z., Andersen, B. M., Lee, H., Illouz, T., Lee, J.-H., Ndayisaba, A., Zandee, S., Basu, H., et al. (2025) · Nature Neuroscience · doi:10.1038/s41593-025-01875-9 · Cited by 29 · see citing works
Molecular mechanisms of selective autophagy in Drosophila
Gohel, R., Kournoutis, A., Petridi, S., & Nezis, I. P. (2020) · International review of cytology · doi:10.1016/bs.ircmb.2019.08.003 · Cited by 27 · see citing works
CLEC16A—An Emerging Master Regulator of Autoimmunity and Neurodegeneration
Pandey, R., Bakay, M. A., & Hakonarson, H. H. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24098224 · Cited by 27 · see citing works
Leikfoss, I., Keshari, P., Gustavsen, M., Bjølgerud, A., Brorson, I. S., Celius, E., Spurkland, A., Bos, S., Harbo, H., & Berge, T. (2015) · PLoS ONE · doi:10.1371/journal.pone.0132957 · Cited by 23 · see citing works
Convergence of secretory, endosomal, and autophagic routes in trans-Golgi–associated lysosomes
Zhou, L., Xue, X., Yang, K. L., Feng, Z. J., Liu, M., & Pastor-Pareja, J. C. (2022) · The Journal of Cell Biology · doi:10.1083/jcb.202203045 · Cited by 22 · see citing works
The ins and outs of phosphatidylethanolamine synthesis in Trypanosoma brucei
Farine, L., & Bütikofer, P. (2012) · Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids · doi:10.1016/j.bbalip.2012.09.008 · Cited by 21 · see citing works
CLEC16A regulates splenocyte and NK cell function in part through MEK signaling
Pandey, R., Bakay, M. A., Hain, H. S., Strenkowski, B. P., Elsaqa, B., Roizen, J. D., Kushner, J. A., Orange, J. S., & Hakonarson, H. H. (2018) · PLoS ONE · doi:10.1371/journal.pone.0203952 · Cited by 21 · see citing works
Pandey, R., Bakay, M. A., Hain, H. S., Strenkowski, B. P., Yermakova, A., Kushner, J. A., Orange, J. S., & Hakonarson, H. H. (2019) · Frontiers in Immunology · doi:10.3389/fimmu.2019.00068 · Cited by 19 · see citing works
Scheuring, D., Minina, E. A., Krüger, F., Lupanga, U., Krebs, M., & Schumacher, K. (2024) · The Plant Cell · doi:10.1093/plcell/koae243 · Cited by 19 · see citing works
GOP-1 promotes apoptotic cell degradation by activating the small GTPase Rab2 in C. elegans
Yin, J., Huang, Y., Guo, P., Hu, S., Yoshina, S., Xuan, N., Gan, Q., Mitani, S., Yang, C., & Wang, X. (2017) · The Journal of Cell Biology · doi:10.1083/jcb.201610001 · Cited by 18 · see citing works
Smits, D. J., Dekker, J., Schot, R., Tabarki, B. M., Alhashem, A. M., Demmers, J., Dekkers, D. H. W., Romito, A., van der Spek, P. J., van Ham, T. J., et al. (2022) · Human Genetics · doi:10.1007/s00439-022-02511-3 · Cited by 15 · see citing works
Clarifying the function of genes at the chromosome 16p13 locus in type 1 diabetes: CLEC16A and DEXI
Gingerich, M. A., Sidarala, V., & Soleimanpour, S. A. (2019) · Genes and Immunity · doi:10.1038/s41435-019-0087-7 · Cited by 13 · see citing works
Genetic Modifiers of Thymic Selection and Central Tolerance in Type 1 Diabetes
Kissler, S. (2022) · Frontiers in Immunology · doi:10.3389/fimmu.2022.889856 · Cited by 12 · see citing works
Drosophila Rab39 Attenuates Lysosomal Degradation
Lakatos, Z., Benkő, P., Juhász, G., & Lőrincz, P. (2021) · International Journal of Molecular Sciences · doi:10.3390/ijms221910635 · Cited by 11 · see citing works
Inducible knockout of Clec16a in mice results in sensory neurodegeneration
Hain, H. S., Pandey, R., Bakay, M. A., Strenkowski, B. P., Harrington, D., Romer, M. A., Motley, W. W., Li, J., Lancaster, E., Roth, L. M., et al. (2021) · Scientific Reports · doi:10.1038/s41598-021-88895-0 · Cited by 11 · see citing works
Gingerich, M. A., Liu, X., Chai, B., Pearson, G. L., Vincent, M. P., Stromer, T., Zhu, J., Sidarala, V., Renberg, A., Sahu, D., et al. (2022) · Autophagy · doi:10.1080/15548627.2022.2080383 · Cited by 12 · see citing works
Role of β‐cell autophagy in β‐cell physiology and the development of diabetes
Yasasilka, X. R., & Lee, M. (2024) · Journal of Diabetes Investigation · doi:10.1111/jdi.14184 · Cited by 11 · see citing works
Tam, R. C.-Y., Lee, A. L.-H., Yang, W., Lau, C. S., & Chan, V. S. F. (2015) · International Journal of Molecular Sciences · doi:10.3390/ijms160714428 · Cited by 10 · see citing works
Exploring the role of the multiple sclerosis susceptibility gene CLEC16A in T cells
Eriksson, A. M., Leikfoss, I. S., Abrahamsen, G., Sundvold, V., Isom, M. M., Keshari, P., Rognes, T., Landsverk, O. J. B., Bos, S. D., Harbo, H. F., et al. (2021) · Scandinavian Journal of Immunology · doi:10.1111/sji.13050 · Cited by 8 · see citing works
GFS9 Affects Piecemeal Autophagy of Plastids in Young Seedlings ofArabidopsis thaliana
Ishida, H., Okashita, Y., Ishida, H., Hayashi, M., Izumi, M., Makino, A., Bhuiyan, N. H., & van Wijk, K. J. (2021) · Plant and Cell Physiology · doi:10.1093/pcp/pcab084 · Cited by 5 · see citing works
Yamaguchi, N., Takakura, Y., & Akiyama, T. (2024) · Frontiers in Immunology · doi:10.3389/fimmu.2024.1488020 · Cited by 4 · see citing works
Altered mitochondrial functionality in metabolic disorders: insights from Drosophila studies
Zeng, Y., Yang, Y., Zhu, Y., Xu, P., Cheong, C., Zhao, Y. J., & Baeg, G. H. (2026) · Frontiers in Endocrinology · doi:10.3389/fendo.2026.1817121 · Cited by 2 · see citing works
Genes Involved in Type 1 Diabetes
Bakay, M. A., Pandey, R., & Hakonarso, H. (2013) · InTech eBooks · doi:10.5772/52435 · Cited by 2 · see citing works
GOP-1: Helping phagosomes pass the acid test
Stuart, L. M., & Lacy‐Hulbert, A. (2017) · The Journal of Cell Biology · doi:10.1083/jcb.201704047 · Cited by 1 · see citing works
Haddad, D., & Verstreken, P. (2016) · Wiley eBooks · doi:10.1002/9781118978320.ch4 · Cited by 1 · see citing works
Boda, A., Balázs, V., Nagy, A., Hargitai, D., Lippai, M., Simon‐Vecsei, Z., Molnár, M., Fürstenhoffer, F., Juhász, G., & Lőrincz, P. (2024) · eLife · doi:10.7554/elife.102663.1 · Cited by 1 · see citing works
The Origin of Autophagosomes: The Beginning of an End
Abreu, S., Sánchez, J., & Reggiori, F. (2013) · Springer eBooks · doi:10.1007/978-1-4614-6561-4_3
Genetic and molecular studies of multiple sclerosis associated genes
Keshari, P. (2017) · NORA - Norwegian Open Research Archives
Akary, E., Berger, A., Perreau, F., Frey, A., To, A., Citerne, S., Schaller, H., Vernhettes, S., Grandjean, O., Nési, N., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.09.12.557332
Boda, A., Balázs, V., Nagy, A., Hargitai, D., Lippai, M., Simon‐Vecsei, Z., Molnár, M., Fürstenhoffer, F., Juhász, G., & Lőrincz, P. (2025) · eLife · doi:10.7554/elife.102663.2
Boda, A., Balázs, V., Nagy, A., Hargitai, D., Lippai, M., Simon‐Vecsei, Z., Molnár, M., Fürstenhoffer, F., Juhász, G., & Lőrincz, P. (2024) · eLife · doi:10.7554/elife.102663.3 · Cited by 5 · see citing works
Khalil, B. (2016) · theses.fr (ABES) · doi:10.70675/4446111fz4182z4737zae76z7f117887a893
- Authors
- Kim, S., Naylor, S. A., & DiAntonio, A.
- Affiliations
- Department of Developmental Biology, Washington University in St. Louis, St. Louis, MO 63110
- Washington University in St. Louis (US)
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2012-04-09
- Volume
- 109
- Issue
- 18
- Pages
- E1072-81
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC3344964
- OpenAlex
- W2113382515
- Cited by
- 53
- References
- 52
- Citations by year
- 2026: 1 · 2025: 3 · 2024: 5 · 2023: 3 · 2022: 4 · 2021: 5 · 2020: 1 · 2019: 3 · 2018: 1 · 2017: 6 · 2016: 5 · 2015: 7 · 2014: 3 · 2013: 5 · 2012: 1
- FWCI
- 3.83
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institutes of Health
- National Institute on Drug Abuse (DA020812, R01DA020812)
- Topics
- Health Sciences › Medicine › Epidemiology › Autophagy in Disease and Therapy
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular transport and secretion
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Physiology › Calcium signaling and nucleotide metabolism
- Keywords
- EMA, autophagy, Golgi apparatus, CLEC16A, autophagosome formation, starvation, fat body, autolysosomes, Drosophila
- MeSH terms
- Animals, Autophagy, Drosophila, Fat Body, Golgi Apparatus, Humans, Lysosomes, Membrane Fusion, Monosaccharide Transport Proteins, Mutation, Phagosomes, Endosomes, Genes, Insect, Drosophila Proteins, Lectins, C-Type, Microscopy, Electron, Transmission
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review