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Mutational landscape of yeast mutator strains
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Significance: Deficiencies in genome maintenance genes (so-called mutator genes) result in increased mutagenesis that impacts cell evolvability. How the mutational processes drive the evolution of genome structure is not well understood. Here, we used high-throughput sequencing to characterize the mutation events (from punctual mutations to large chromosomal rearrangements) that occurred in mutation accumulation lines derived from a broad set of yeast mutator strains. Establishing genome-wide mutation profiles revealed that each mutator exhibits a unique and sometimes complex mutational signature. Our results also show how the dynamics of mutation accumulation can generate different genomes.
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“Furthermore, the mutational profile of the C23 genome resembles that of a S. cerevisiae MSH2 mutant (24, 25).”
From Mismatch Repair of DNA Replication Errors Contributes to Microevolution in the Pathogenic Fungus Cryptococcus neoformans (2017) · cites this paper as [25]
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Cites
The spindle-assembly checkpoint in space and time
Musacchio, A., & Salmon, E. D. (2007) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2163 · Cited by 2,227
Mutational Processes Molding the Genomes of 21 Breast Cancers
Nik-Zainal, S., Alexandrov, L. B., Wedge, D. C., Van Loo, P., Greenman, C. D., Raine, K., Jones, D., Hinton, J., Marshall, J., Stebbings, L. A., et al. (2012) · Cell · doi:10.1016/j.cell.2012.04.024 · Cited by 1,909
A comprehensive catalogue of somatic mutations from a human cancer genome
Pleasance, E. D., Cheetham, R. K., Stephens, P. J., McBride, D. J., Humphray, S. J., Greenman, C. D., Varela, I., Lin, M.-L., Ordóñez, G. R., Bignell, G. R., et al. (2010) · Nature · doi:10.1038/nature08658 · Cited by 1,696
The patterns and dynamics of genomic instability in metastatic pancreatic cancer
Campbell, P. J., Yachida, S., Mudie, L. J., Stephens, P. J., Pleasance, E. D., Stebbings, L. A., Morsberger, L. A., Latimer, C., McLaren, S., Lin, M.-L., et al. (2010) · Nature · doi:10.1038/nature09460 · Cited by 1,317
Effects of Aneuploidy on Cellular Physiology and Cell Division in Haploid Yeast
Torres, E. M., Sokolsky, T., Tucker, C. M., Chan, L. Y., Boselli, M., Dunham, M. J., & Amon, A. (2007) · Science · doi:10.1126/science.1142210 · Cited by 935
Zhao, X., Muller, E. G. D., & Rothstein, R. (1998) · Molecular Cell · doi:10.1016/s1097-2765(00)80277-4 · Cited by 728
A genome-wide view of the spectrum of spontaneous mutations in yeast.
Lynch, M., Sung, W., Morris, K., Coffey, N., Landry, C. R., Dopman, E. B., Dickinson, W. J., Okamoto, K., Kulkarni, S., Hartl, D. L., et al. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0803466105 · Cited by 708
Detectable clonal mosaicism and its relationship to aging and cancer
Jacobs, K. B., Yeager, M., Zhou, W., Wacholder, S., Wang, Z., Rodriguez-Santiago, B., Hutchinson, A., Deng, X., Liu, C., Horner, M.-J., et al. (2012) · Nature Genetics · doi:10.1038/ng.2270 · Cited by 589
Redundancy of Saccharomyces cerevisiae MSH3 and MSH6 in MSH2-dependent mismatch repair
Marsischky, G. T., Filosi, N., Kane, M. F., & Kolodner, R. (1996) · Genes & Development · doi:10.1101/gad.10.4.407 · Cited by 581
Aneuploidy confers quantitative proteome changes and phenotypic variation in budding yeast
Pavelka, N., Rancati, G., Zhu, J., Bradford, W. D., Saraf, A., Florens, L., Sanderson, B. W., Hattem, G. L., & Li, R. (2010) · Nature · doi:10.1038/nature09529 · Cited by 577
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Buckland, R. J., Watt, D. L., Chittoor, B., Nilsson, A. K., Kunkel, T. A., & Chabes, A. (2014) · PLoS Genetics · doi:10.1371/journal.pgen.1004846 · Cited by 69
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Metadata
- Authors
- Serero, A., Jubin, C., Loeillet, S., Legoix-Né, P., & Nicolas, A. G.
- Affiliations
- Centre National de la Recherche Scientifique (FR)
- Institut Curie (FR)
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2014-01-21
- Volume
- 111
- Issue
- 5
- Pages
- 1897-1902
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC3918763
- OpenAlex
- W2053903416
- Cited by
- 126
- References
- 48
- Citations by year
- 2026: 6 · 2025: 7 · 2024: 7 · 2023: 10 · 2022: 6 · 2021: 15 · 2020: 15 · 2019: 11 · 2018: 9 · 2017: 19 · 2016: 6 · 2015: 9 · 2014: 6
- FWCI
- 5.47
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- HAL (submittedVersion)
- Funders
- Agence Nationale de la Recherche (ANR-10-EQPX-0003, 10-EQPX-03, ANR10EQPX03, ANR 10-INBS-09-08, ANR-10, ANR-09-BLAN-0278, ANR-10-EQPX)
- Fondation ARC pour la Recherche sur le Cancer
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fungal and yeast genetics research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Keywords
- mutator strains, Saccharomyces cerevisiae, mutation spectrum, genome maintenance, genomic instability, FEN1, ATR, ATM, chromosome structural variation, aneuploidy, clonal evolution, tumor evolution, DNA mismatch repair, DNA damage checkpoint, telomere maintenance, mitochondrial DNA maintenance
- MeSH terms
- Aneuploidy, Genes, Fungal, Haploidy, Mutation, Saccharomyces cerevisiae, Gene Rearrangement, Chromosomes, Fungal, Sequence Analysis, DNA
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