Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302

Fast and accurate short read alignment with Burrows-Wheeler transform

Li, H., & Durbin, R. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp324 · Cited by 58,607

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

Katoh, K., & Standley, D. M. (2013) · Molecular Biology and Evolution · doi:10.1093/molbev/mst010 · Cited by 46,209

Instability and decay of the primary structure of DNA

Lindahl, T. (1993) · Nature · doi:10.1038/362709a0 · Cited by 5,679

A draft sequence of the Neandertal genome

Green, R. E., Krause, J., Briggs, A. W., Maricic, T., Stenzel, U., Kircher, M., Patterson, N., Li, H., Zhai, W., Fritz, M. H.-Y., et al. (2010) · Science · doi:10.1126/science.1188021 · Cited by 4,318

Genetic history of an archaic hominin group from Denisova Cave in Siberia

Reich, D., Green, R. E., Kircher, M., Krause, J., Patterson, N., Durand, E. Y., Viola, B., Briggs, A. W., Stenzel, U., Johnson, P. L. F., et al. (2010) · Nature · doi:10.1038/nature09710 · Cited by 1,991

A high-coverage genome sequence from an archaic denisovan individual

Meyer, M., Kircher, M., Gansauge, M.-T., Li, H., Racimo, F., Mallick, S., Schraiber, J. G., Jay, F., Prüfer, K., de Filippo, C., et al. (2012) · Science · doi:10.1126/science.1224344 · Cited by 1,967

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

Kircher, M., Sawyer, S., & Meyer, M. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr771 · Cited by 1,106 · cited 2×

Patterns of damage in genomic DNA sequences from a neandertal

Briggs, A. W., Stenzel, U., Johnson, P. L. F., Green, R. E., Kelso, J., Prüfer, K., Meyer, M., Krause, J., Ronan, M. T., Lachmann, M., et al. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0704665104 · Cited by 981

Ancient human genome sequence of an extinct Palaeo-Eskimo

Rasmussen, M., Li, Y., Lindgreen, S., Pedersen, J. S., Albrechtsen, A., Moltke, I., Metspalu, M., Metspalu, E., Kivisild, T., Gupta, R., et al. (2010) · Nature · doi:10.1038/nature08835 · Cited by 849

Maternal genetic structure of a neolithic population of the Yangshao culture

Miao, B., Liu, Y., Gu, W., Wei, Q., Wu, Q., Wang, W., Zhang, M., Ding, M., Wang, T., Liu, J., et al. (2021) · Journal of genetics and genomics/Journal of Genetics and Genomics · doi:10.1016/j.jgg.2021.04.005 · Cited by 26

Ancient Yersinia pestis and Salmonella enterica genomes from Bronze Age Crete

Neumann, G. U., Skourtanioti, E., Burri, M., Nelson, E. A., Michel, M., Hiss, A. N., McGeorge, P. J. P., Betancourt, P. P., Spyrou, M. A., Krause, J., et al. (2022) · Current Biology · doi:10.1016/j.cub.2022.06.094 · Cited by 30

Extended longevity of DNA preservation in Levantine Paleolithic sediments, Sefunim Cave, Israel

Slon, V., Clark, J. L., Friesem, D. E., Orbach, M., Porat, N., Meyer, M., Kandel, A. W., & Shimelmitz, R. (2022) · Scientific Reports · doi:10.1038/s41598-022-17399-2 · Cited by 26

Yersinia pestis genomes reveal plague in Britain 4000 years ago

Swali, P., Schulting, R., Gilardet, A., Kelly, M., Anastasiadou, K., Glocke, I., McCabe, J., Williams, M., Audsley, T., Loe, L., et al. (2023) · Nature Communications · doi:10.1038/s41467-023-38393-w · Cited by 26

Ancient human genomics: the methodology behind reconstructing evolutionary pathways

Marciniak, S., Klunk, J., Devault, A. M., Enk, J. M., & Poinar, H. N. (2015) · Journal of Human Evolution · doi:10.1016/j.jhevol.2014.11.003 · Cited by 30

Authentication and Assessment of Contamination in Ancient DNA

Renaud, G., Schubert, M., Sawyer, S., & Orlando, L. (2019) · Methods in Molecular Biology · doi:10.1007/978-1-4939-9176-1_17 · Cited by 23

A Black Death mass grave at Thornton Abbey: the discovery and examination of a fourteenth-century rural catastrophe

Willmott, H., Townend, P., Swales, D. M., Poinar, H. N., Eaton, K., & Klunk, J. (2020) · Antiquity · doi:10.15184/aqy.2019.213 · Cited by 26

Recent mitochondrial lineage extinction in the critically endangered Javan rhinoceros

Margaryan, A., Sinding, M. S., Liu, S., Vieira, F. G., Chan, Y. L., Nathan, S. K. S. S., Moodley, Y., Bruford, M. W., & Gilbert, M. T. P. (2020) · Zoological Journal of the Linnean Society · doi:10.1093/zoolinnean/zlaa004 · Cited by 26

Genetic Time Travel

Krause, J., & Pääbo, S. (2016) · Genetics · doi:10.1534/genetics.116.187856 · Cited by 25

Cranial deformation and genetic diversity in three adolescent male individuals from the Great Migration Period from Osijek, eastern Croatia

Fernandes, D., Sirak, K. A., Cheronet, O., Howcroft, R., Čavka, M., Los, D., Burmaz, J., Pinhasi, R., & Novak, M. (2019) · PLoS ONE · doi:10.1371/journal.pone.0216366 · Cited by 27

Ancient genome analyses shed light on kinship organization and mating practice of Late Neolithic society in China

Ning, C., Zhang, F., Cao, Y., Qin, L., Hudson, M. J., Gao, S., Ma, P., Li, W., Zhu, S., Li, C., et al. (2021) · iScience · doi:10.1016/j.isci.2021.103352 · Cited by 26

Development and Optimization of a Silica Column-Based Extraction Protocol for Ancient DNA

Dehasque, M., Pečnerová, P., Lagerholm, V. K., Ersmark, E., Danilov, G. K., Mortensen, P. B., Vartanyan, S., & Dalén, L. (2022) · Genes · doi:10.3390/genes13040687 · Cited by 27

Ecology, Not Host Phylogeny, Shapes the Oral Microbiome in Closely Related Species

Moraitou, M., Forsythe, A., Yates, J. A. F., Brealey, J. C., Warinner, C., & Guschanski, K. (2022) · Molecular Biology and Evolution · doi:10.1093/molbev/msac263 · Cited by 26

Demographic history and genetic structure in pre-Hispanic Central Mexico

Villa-Islas, V., Izarraras-Gomez, A., Larena, M., Campos, E. M. P., Sandoval‐Velasco, M., Rodríguez-Rodríguez, J. E., Bravo-Lopez, M., Moguel, B., Fregel, R., Garfias-Morales, E., et al. (2023) · Science · doi:10.1126/science.add6142 · Cited by 27

Evidence for dynastic succession among early Celtic elites in Central Europe

Gretzinger, J., Schmitt, F., Mötsch, A., Carlhoff, S., Lamnidis, T. C., Huang, Y., Ringbauer, H., Knipper, C., Francken, M., Mandt, F., et al. (2024) · Nature Human Behaviour · doi:10.1038/s41562-024-01888-7 · Cited by 27

Archaeology meets environmental genomics: implementing sedaDNA in the study of the human past

Özdoğan, K. T., Gelabert, P., Hammers, N., Altınışık, N. E., de Groot, G. A., & Plets, G. (2024) · Archaeological and Anthropological Sciences · doi:10.1007/s12520-024-01999-2 · Cited by 27

Phylogenetically informative proteins from an Early Miocene rhinocerotid

Paterson, R. S., Mackie, M., Capobianco, A., Heckeberg, N. S., Fraser, D., Demarchi, B., Munir, F., Patramanis, I., Ramos‐Madrigal, J., Liu, S., et al. (2025) · Nature · doi:10.1038/s41586-025-09231-4 · Cited by 30

Analysis of Human Degraded DNA in Forensic Genetics

Pajnič, I. Z. (2025) · Genes · doi:10.3390/genes16111375 · Cited by 24

Unraveling the phylogenetic relationships of the extinct bovid Myotragus balearicus Bate 1909 from the Balearic Islands

Bover, P. R., Llamas, B., Mitchell, K. J., Thomson, V. A., Alcover, J. A., Lalueza‐Fox, C., Cooper, A., & Pons, J. (2019) · Quaternary Science Reviews · doi:10.1016/j.quascirev.2019.05.005 · Cited by 26

Mitogenomic diversity in Sacred Ibis Mummies sheds light on early Egyptian practices

Wasef, S., Subramanian, S., O’Rorke, R., Huynen, L., El-Marghani, S., Curtis, C., Popinga, A., Holland, B. R., Ikram, S., Millar, C. D., et al. (2019) · PLoS ONE · doi:10.1371/journal.pone.0223964 · Cited by 25

A Matrilineal Genetic Perspective of Hanging Coffin Custom in Southern China and Northern Thailand

Zhang, X., Li, C., Zhou, Y., Huang, J.-H., Yu, T., Liu, X., Shi, H., Liu, H., Chia, S., Huang, S., et al. (2020) · iScience · doi:10.1016/j.isci.2020.101032 · Cited by 24

‘Barcode fishing’ for archival DNA from historical type material overcomes taxonomic hurdles, enabling the description of a new frog species

Scherz, M. D., Rasolonjatovo, S. M., Köhler, J., Rancilhac, L., Rakotoarison, A., Raselimanana, A. P., Ohler, A., Preick, M., Hofreiter, M., Glaw, F., et al. (2020) · Scientific Reports · doi:10.1038/s41598-020-75431-9 · Cited by 26

Advancing and refining archaeological dental calculus research using multiomic frameworks

Wright, S., Dobney, K. M., & Weyrich, L. S. (2021) · STAR Science & Technology of Archaeological Research · doi:10.1080/20548923.2021.1882122 · Cited by 26

Interdisciplinary Analyses of Bronze Age Communities from Western Hungary Reveal Complex Population Histories

Gerber, D., Szeifert, B., Székely, O., Egyed, B., Gyuris, B., Giblin, J. I., Horváth, A., Köhler, K., Kulcsár, G., Kustár, Á., et al. (2023) · Molecular Biology and Evolution · doi:10.1093/molbev/msad182 · Cited by 30

Ancient genomes revealed the complex human interactions of the ancient western Tibetans

Bai, F., Liu, Y., Wangdue, S., Wang, T., He, W., Xi, L., Tsho, Y., Tsering, T., Cao, P., Dai, Q., et al. (2024) · Current Biology · doi:10.1016/j.cub.2024.04.068 · Cited by 24

A genomic history of the North Pontic Region from the Neolithic to the Bronze Age

Nikitin, A. G., Lazaridis, I., Patterson, N. J., Іванова, С., Videiko, M. Y., Dergachev, V., Kotova, N., Lillie, M. C., Potekhina, I. D., Krenz‐Niedbała, M., et al. (2025) · Nature · doi:10.1038/s41586-024-08372-2 · Cited by 28

An assessment of ancient DNA preservation in Holocene–Pleistocene fossil bone excavated from the world heritage Naracoorte Caves, South Australia

Grealy, A. C., Macken, A. C., Allentoft, M. E., Rawlence, N. J., Reed, E. H., & Bunce, M. (2016) · Journal of Quaternary Science · doi:10.1002/jqs.2830 · Cited by 25

A review of the dodo and its ecosystem: insights from a vertebrate concentration Lagerstätte in Mauritius

Rijsdijk, K. F., HUME, J. P., de Louw, P. G. B., Meijer, H. J. M., Janoo, A., de Boer, E. J., Steel, L., Vos, J. D., van der Sluis, L., Hooghiemstra, H., et al. (2015) · Journal of Vertebrate Paleontology · doi:10.1080/02724634.2015.1113803 · Cited by 24

Ancient DNA reveals complexity in the evolutionary history and taxonomy of the endangered Australian brush-tailed bettongs (Bettongia: Marsupialia: Macropodidae: Potoroinae)

Haouchar, D., Pacioni, C., Haile, J., McDowell, M. C., Baynes, A., Phillips, M. J., Austin, J. J., Pope, L. C., & Bunce, M. (2016) · Biodiversity and Conservation · doi:10.1007/s10531-016-1210-y · Cited by 24

A genetic perspective on Longobard-Era migrations

Vai, S., Brunelli, A., Modi, A., Tassi, F., Vergata, C., Pilli, E., Lari, M., Susca, R. R., Giostra, C., Baricco, L. P., et al. (2019) · European Journal of Human Genetics · doi:10.1038/s41431-018-0319-8 · Cited by 25

Integrating Sequence Capture and Restriction Site-Associated DNA Sequencing to Resolve Recent Radiations of Pelagic Seabirds

Ferrer, J., James, H. F., Chesser, R. T., Bretagnolle, V., González‐Solís, J., Rozas, J., Riutort, M., & Welch, A. J. (2021) · Systematic Biology · doi:10.1093/sysbio/syaa101 · Cited by 26

Exploring the potential of dental calculus to shed light on past human migrations in Oceania

Velsko, I. M., Fagernäs, Z., Tromp, M., Bedford, S., Buckley, H. R., Clark, G., Dudgeon, J., Flexner, J., Galipaud, J., Kinaston, R. L., et al. (2024) · Nature Communications · doi:10.1038/s41467-024-53920-z · Cited by 25

Genomic evidence for low genetic diversity but purging of strong deleterious variants in snow leopards

Yang, L., Jin, H., Yang, Q., Poyarkov, A. D., Korablev, M. P., Rozhnov, V. V., Shao, J., Fu, Q., Hernandez-Blanco, J. A., Zhan, X., et al. (2025) · Genome biology · doi:10.1186/s13059-025-03555-0 · Cited by 24

Impact of DNA degradation on massively parallel sequencing-based autosomal STR, iiSNP, and mitochondrial DNA typing systems

Zavala, E. I., Rajagopal, S., Perry, G. H., Kružić, I., Bašić, Ž., Parsons, T. J., & Holland, M. M. (2019) · International Journal of Legal Medicine · doi:10.1007/s00414-019-02110-4 · Cited by 23

American mastodon mitochondrial genomes suggest multiple dispersal events in response to Pleistocene climate oscillations

Karpinski, E., Hackenberger, D., Zazula, G. D., Widga, C., Duggan, A. T., Golding, G. B., Kuch, M., Klunk, J., Jass, C. N., Groves, P., et al. (2020) · Nature Communications · doi:10.1038/s41467-020-17893-z · Cited by 23

Museomics Dissects the Genetic Basis for Adaptive Seasonal Coloration in the Least Weasel

Miranda, I., Giska, I., Farelo, L., Pimenta, J., Zímová, M., Bryk, J., Dalén, L., Mills, L. S., Zub, K., & Melo‐Ferreira, J. (2021) · Molecular Biology and Evolution · doi:10.1093/molbev/msab177 · Cited by 23

Probing the genomic limits of de-extinction in the Christmas Island rat

Lin, J., Duchêne, D. A., Carøe, C., Smith, O., Ciucani, M. M., Niemann, J., Richmond, D. J., Greenwood, A. D., MacPhee, R. D. E., Zhang, G., et al. (2022) · Current Biology · doi:10.1016/j.cub.2022.02.027 · Cited by 23

Ancient DNA reveals interstadials as a driver of common vole population dynamics during the last glacial period

Baca, M., Popović, D., Lemanik, A., Bañuls‐Cardona, S., Conard, N. J., Cuenca‐Bescós, G., Desclaux, E., Fewlass, H., García, J. T., Hadravová, T., et al. (2022) · Journal of Biogeography · doi:10.1111/jbi.14521 · Cited by 24

Ancient DNA of narrow-headed vole reveal common features of the Late Pleistocene population dynamics in cold-adapted small mammals

Baca, M., Popović, D., Agadzhanyan, A. K., Baca, K., Conard, N. J., Fewlass, H., Filek, T., Golubiński, M., Horáček, I., Knul, M. V., et al. (2023) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2022.2238 · Cited by 24

Fine-scale sampling uncovers the complexity of migrations in 5th–6th century Pannonia

Vyas, D. N., Koncz, I., Modi, A., Mende, B. G., Tian, Y., Francalacci, P., Lari, M., Vai, S., Straub, P., Gallina, Z., et al. (2023) · Current Biology · doi:10.1016/j.cub.2023.07.063 · Cited by 27

The complete mitochondrial genomes of Umalia orientalis and Lyreidus brevifrons: The phylogenetic position of the family Raninidae within Brachyuran crabs

Shi, G., Cui, Z., Hui, M., Liu, Y., Chan, T., & Song, C. (2015) · Marine Genomics · doi:10.1016/j.margen.2015.02.002 · Cited by 23

Genomic perspectives on the history and evolutionary ecology of tropical rainforest occupation by humans

Perry, G. H., & Verdu, P. (2016) · Quaternary International · doi:10.1016/j.quaint.2016.04.038 · Cited by 25

Mitochondrial DNA analysis of eneolithic trypillians from Ukraine reveals neolithic farming genetic roots

Nikitin, A. G., Potekhina, I. D., Rohland, N., Mallick, S., Reich, D., & Lillie, M. C. (2017) · PLoS ONE · doi:10.1371/journal.pone.0172952 · Cited by 24

Direct radiocarbon dating and DNA analysis of the Darra-i-Kur (Afghanistan) human temporal bone

Douka, K., Slon, V., Stringer, C. B., Potts, R., Hübner, A., Meyer, M., Spoor, F., Pääbo, S., & Higham, T. (2017) · Journal of Human Evolution · doi:10.1016/j.jhevol.2017.03.003 · Cited by 23

Identifying source populations for the reintroduction of the Eurasian beaver, Castor fiber L. 1758, into Britain: evidence from ancient DNA

Marr, M. M., Brace, S., Schreve, D., & Barnes, I. (2018) · Scientific Reports · doi:10.1038/s41598-018-21173-8 · Cited by 23

Biochronological framework for the late Galerian and early-middle Aurelian Mammal Ages of peninsular Italy

Petronio, C., Stefano, G. D., Kotsakis, T., Salari, L., Marra, F., & Jicha, B. R. (2019) · Geobios · doi:10.1016/j.geobios.2019.02.002 · Cited by 23

Late Quaternary Fossil Mammals from the Cayman Islands, West Indies

Morgan, G. S., MacPhee, R. D. E., Woods, R., & Turvey, S. T. (2019) · Bulletin of the American Museum of Natural History · doi:10.1206/0003-0090.428.1.1 · Cited by 23

Copan microFLOQ® Direct Swab collection of bloodstains, saliva, and semen on cotton cloth

Sherier, A. J., Kieser, R. E., Novroski, N. M. M., Wendt, F. R., King, J. L., Woerner, A. E., Ambers, A., Garofano, P., & Budowle, B. (2019) · International Journal of Legal Medicine · doi:10.1007/s00414-019-02081-6 · Cited by 23

Comparison of two ancient DNA extraction protocols for skeletal remains from tropical environments

Nieves-Colón, M. A., Ozga, A. T., Pestle, W. J., Cucina, A., Tiesler, V. G., Stanton, T. W., & Stone, A. C. (2018) · American Journal of Physical Anthropology · doi:10.1002/ajpa.23472 · Cited by 25

Kinship practices at the early bronze age site of Leubingen in Central Germany

Penske, S., Küßner, M., Rohrlach, A. B., Knipper, C., Nováček, J., Childebayeva, A., Krause, J., & Haak, W. (2024) · Scientific Reports · doi:10.1038/s41598-024-54462-6 · Cited by 24

Stable C and N isotope analysis of hair suggest undernourishment as a factor in the death of a mummified girl from late 19th century San Francisco, CA

Eerkens, J. W., Hull, B., Goodman, J., Evoy, A., Kapp, J. D., Hussain, S., & Green, R. E. (2017) · PLoS ONE · doi:10.1371/journal.pone.0184921 · Cited by 22

Testing of Alignment Parameters for Ancient Samples: Evaluating and Optimizing Mapping Parameters for Ancient Samples Using the TAPAS Tool

Taron, U. H., Lell, M., Barlow, A., & Paijmans, J. L. A. (2018) · Genes · doi:10.3390/genes9030157 · Cited by 22

New mitogenomic lineages in Papio baboons and their phylogeographic implications

Roos, C., Knauf, S., Chuma, I. S., Maille, A., Callou, C., Sabin, R., Miguez, R. P., & Zinner, D. P. (2020) · American Journal of Physical Anthropology · doi:10.1002/ajpa.24186 · Cited by 22

Integrated multidisciplinary ecological analysis from the Uluzzian settlement at the Uluzzo C Rock Shelter, south‐eastern Italy

Silvestrini, S., Romandini, M., Marciani, G., Arrighi, S., Carrera, L., Fiorini, A., López‐García, J. M., Lugli, F., Ranaldo, F., Slon, V., et al. (2021) · Journal of Quaternary Science · doi:10.1002/jqs.3341 · Cited by 22

The untapped potential of macrofossils in ancient plant DNA research

Schwörer, C., Leunda, M., Álvarez, N., Gugerli, F., & Sperisen, C. (2022) · New Phytologist · doi:10.1111/nph.18108 · Cited by 22

Ancient mitochondrial and modern whole genomes unravel massive genetic diversity loss during near extinction of Alpine ibex

Robin, M., Ferrari, G., Akgül, G., Muenger, X., von Seth, J., Schuenemann, V. J., Dalén, L., & Grossen, C. (2022) · Molecular Ecology · doi:10.1111/mec.16503 · Cited by 26

Ancient DNA elucidates the lost world of western Indian Ocean giant tortoises and reveals a new extinct species from Madagascar

Kehlmaier, C., Graciá, E., Ali, J. R., Campbell, P. D., Chapman, S. D., Deepak, V., Ihlow, F., Jalil, N., Pierre-Huyet, L., Samonds, K. E., et al. (2023) · Science Advances · doi:10.1126/sciadv.abq2574 · Cited by 24

The genetic legacy of African Americans from Catoctin Furnace

Harney, É., Micheletti, S. J., Bruwelheide, K. S., Freyman, W. A., Bryc, K., Akbari, A., Jewett, E. M., Comer, E., Gates, H. L., Heywood, L. M., et al. (2023) · Science · doi:10.1126/science.ade4995 · Cited by 23

Ancient population genomics and the study of evolution

Parks, M., Subramanian, S., Baroni, C. D., Salvatore, M. C., Zhang, G., Millar, C. D., & Lambert, D. M. (2014) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2013.0381 · Cited by 27

Direct radiocarbon dating and genetic analyses on the purported Neanderthal mandible from the Monti Lessini (Italy)

Talamo, S., Hajdinjak, M., Mannino, M. A., Fasani, L., Welker, F., Martini, F., Romagnoli, F., Zorzin, R., Meyer, M., & Hublin, J. (2016) · Scientific Reports · doi:10.1038/srep29144 · Cited by 24

Radiocarbon dating and isotope analysis on the purported Aurignacian skeletal remains from Fontana Nuova (Ragusa, Italy)

Maida, G. D., Mannino, M. A., Krause‐Kyora, B., Jensen, T. Z. T., & Talamo, S. (2019) · PLoS ONE · doi:10.1371/journal.pone.0213173 · Cited by 22

Molecular identification of late and terminal Pleistocene Equus ovodovi from northeastern China

Yuan, J., Hou, X., Barlow, A., Preick, M., Taron, U. H., Alberti, F., Basler, N., Deng, T., Lai, X., Hofreiter, M., et al. (2019) · PLoS ONE · doi:10.1371/journal.pone.0216883 · Cited by 22

Gene-flow from steppe individuals into Cucuteni-Trypillia associated populations indicates long-standing contacts and gradual admixture

Immel, A., Țerna, S., Simalcsik, A., Susat, J., Šarov, O., Sîrbu, G., Hofmann, R., Müller, J., Nebel, A., & Krause‐Kyora, B. (2020) · Scientific Reports · doi:10.1038/s41598-020-61190-0 · Cited by 23

A 3,000-year-old, basal S. enterica lineage from Bronze Age Xinjiang suggests spread along the Proto-Silk Road

Wu, X., Ning, C., Key, F. M., Valtueña, A. A., Lankapalli, A. K., Gao, S., Xuan, Y., Zhang, F., Liu, L., Nie, Z., et al. (2021) · PLoS Pathogens · doi:10.1371/journal.ppat.1009886 · Cited by 22

Maternal Genetic History of Southern East Asians over the Past 12,000 Years

Liu, Y., Wang, T., Wu, X., Fan, X., Wang, W., Xie, G., Li, Z., Yang, Q., Cao, P., Yang, R., et al. (2021) · Journal of Genetics and Genomics · doi:10.1016/j.jgg.2021.06.002 · Cited by 21

Ancestral mitochondrial N lineage from the Neolithic ‘green’ Sahara

Vai, S., Sarno, S., Lari, M., Luiselli, D., Manzi, G., Gallinaro, M., Mataich, S., Hübner, A., Modi, A., Pilli, E., et al. (2019) · Scientific Reports · doi:10.1038/s41598-019-39802-1 · Cited by 24

Tracing genetic connections of ancient Hungarians to the 6th–14th century populations of the Volga-Ural region

Szeifert, B., Gerber, D., Csáky, V., Langó, P., Stashenkov, D. A., Khokhlov, A. A., Sitdikov, A. G., Gazimzyanov, I. R., Volkova, E. V., Матвеева, Н. П., et al. (2022) · Human Molecular Genetics · doi:10.1093/hmg/ddac106 · Cited by 26

Genome Sequencing of up to 6,000-Year-OldCitrullusSeeds Reveals Use of a Bitter-Fleshed Species Prior to Watermelon Domestication

Pérez-Escobar, O. A., Tusso, S., Przelomska, N. A. S., Wu, S., Ryan, P., Nesbitt, M., Silber, M. V., Preick, M., Fei, Z., Hofreiter, M., et al. (2022) · Molecular Biology and Evolution · doi:10.1093/molbev/msac168 · Cited by 22

Limited historical admixture between European wildcats and domestic cats

Jamieson, A., Carmagnini, A., Howard‐McCombe, J., Doherty, S., Hirons, A., Dimopoulos, E. A., Lin, A. T., Allen, R., Anderson-Whymark, H., Barnett, R., et al. (2023) · Current Biology · doi:10.1016/j.cub.2023.08.031 · Cited by 24

A probable prehistoric case of meningococcal disease from San Francisco Bay: Next generation sequencing of Neisseria meningitidis from dental calculus and osteological evidence

Eerkens, J. W., Nichols, R. V., Murray, G. G. R., Perez, K., Murga, E., Kaijankoski, P., Rosenthal, J. S., Engbring, L., & Shapiro, B. (2018) · International Journal of Paleopathology · doi:10.1016/j.ijpp.2018.05.001 · Cited by 22

Presence of the Middle Pleistocene cave bears in China confirmed – Evidence from Zhoukoudian area

Jiangzuo, Q., Wagner, J. F., Chen, J., Dong, C., Wei, J., Ning, J., & Liu, J. (2018) · Quaternary Science Reviews · doi:10.1016/j.quascirev.2018.09.012 · Cited by 21

Metagenomic Composition Analysis of an Ancient Sequenced Polar Bear Jawbone from Svalbard

Pratas, D., Hosseini, M., Grilo, G., Pinho, A. J., Silva, R. M., Caetano, T., Carneiro, J., & Pereira, F. (2018) · Genes · doi:10.3390/genes9090445 · Cited by 21

Palaeohistology and life history evolution in cave bears, Ursus spelaeus sensu lato

Veitschegger, K., Kolb, C., Amson, E., Scheyer, T. M., & Sánchez-Villagra, M. R. (2018) · PLoS ONE · doi:10.1371/journal.pone.0206791 · Cited by 21

Paleolithic genetic link between Southern China and Mainland Southeast Asia revealed by ancient mitochondrial genomes

Bai, F., Zhang, X., Ji, X., Cao, P., Feng, X., Yang, R., Peng, M., Pei, S., & Fu, Q. (2020) · Journal of Human Genetics · doi:10.1038/s10038-020-0796-9 · Cited by 21

Kouprey (Bos sauveli) genomes unveil polytomic origin of wild Asian Bos

Sinding, M. S., Ciucani, M. M., Ramos‐Madrigal, J., Carmagnini, A., Rasmussen, J. A., Feng, S., Chen, G., Vieira, F. G., Mattiangeli, V., Ganjoo, R. K., et al. (2021) · iScience · doi:10.1016/j.isci.2021.103226 · Cited by 21

Massive influence of DNA isolation and library preparation approaches on palaeogenomic sequencing dataPreprint

Barlow, A., Fortes, G. G., Dalén, L., Pinhasi, R., Gasparyan, B., Rabeder, G., Frischauf, C., Paijmans, J. L. A., & Hofreiter, M. (2016) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/075911 · Cited by 22

The Genomic Formation of Human Populations in East AsiaPreprint

Wang, C., 王传超, Yeh, H., Popov, А. N., Zhang, H., Matsumura, H., Sirak, K. A., Cheronet, O., Kovalev, A., Rohland, N., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.03.25.004606v1 · Cited by 21

An efficient pipeline for ancient DNA mapping and recovery of endogenous ancient DNA from whole-genome sequencing data

Xu, W., Lin, Y., Zhao, K., Li, H., Tian, Y., Ngatia, J. N., Ma, Y., Sahu, S. K., Guo, H., Guo, X., et al. (2021) · Ecology and Evolution · doi:10.1002/ece3.7056 · Cited by 20

Illuminating Genetic Mysteries of the Dead Sea Scrolls

Anava, S., Neuhof, M., Gingold, H., Sagy, O., Munters, A. R., Svensson, E., Afshinnekoo, E., Danko, D., Foox, J., Shor, P., et al. (2020) · Cell · doi:10.1016/j.cell.2020.04.046 · Cited by 21

The Biological Hierarchy, Time, and Temporal ‘Omics in Evolutionary Biology: A Perspective

Snead, A. A., & Clark, R. D. (2022) · Integrative and Comparative Biology · doi:10.1093/icb/icac138 · Cited by 20

The domestic dog that lived ∼17,000 years ago in the Lower Magdalenian of Erralla site (Basque Country): A radiometric and genetic analysis

Hervella, M., San-Juan-Nó, A., Aldasoro-Zabala, A., Mariezkurrena, K., Altuna, J., & Vaca, C. D. L. R. (2022) · Journal of Archaeological Science Reports · doi:10.1016/j.jasrep.2022.103706 · Cited by 20

Community-engaged ancient DNA project reveals diverse origins of 18th-century African descendants in Charleston, South Carolina

Fleskes, R. E., Cabana, G. S., Gilmore, J. K., Juarez, C. A., Karcher, E., Oubré, L., Mishoe, G., Ofunniyin, A. A., & Schurr, T. G. (2023) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2201620120 · Cited by 22

Genetic continuity and change among the Indigenous peoples of California

Nakatsuka, N. J., Holguin, B., Sedig, J. W., Langenwalter, P. E., Carpenter, J. P., Culleton, B. J., García-Moreno, C., Harper, T. K., Martin, D. L., Ramírez, J. M., et al. (2023) · Nature · doi:10.1038/s41586-023-06771-5 · Cited by 20

The history of Coast Salish “woolly dogs” revealed by ancient genomics and Indigenous Knowledge

Lin, A. T., Hammond-Kaarremaa, L., Liu, H., Stantis, C., McKechnie, I., Pavel, M., Pavel, S., Wyss, S. S., Sparrow, D., Carr, K. E., et al. (2023) · Science · doi:10.1126/science.adi6549 · Cited by 23

Ancient genomes reveal insights into ritual life at Chichén Itzá

Barquera, R., Chávez, O. D. C., Nägele, K., Pérez-Ramallo, P., Hernández-Zaragoza, D. I., Szolek, A., Rohrlach, A. B., Librado, P., Childebayeva, A., Bianco, R. A., et al. (2024) · Nature · doi:10.1038/s41586-024-07509-7 · Cited by 20

Genetic Discontinuity between the Maritime Archaic and Beothuk Populations in Newfoundland, Canada

Duggan, A. T., Harris, A. J. T., Marciniak, S., Marshall, I., Kuch, M., Kitchen, A., Renaud, G., Southon, J. R., Fuller, B., Young, J., et al. (2017) · Current Biology · doi:10.1016/j.cub.2017.08.053 · Cited by 24

Ancient DNA Resolves the History of Tetragnatha (Araneae, Tetragnathidae) Spiders on Rapa Nui

Cotoras, D. D., Murray, G. G. R., Kapp, J. D., Gillespie, R. G., Griswold, C., Simison, W. B., Green, R. E., & Shapiro, B. (2017) · Genes · doi:10.3390/genes8120403 · Cited by 20

Genetic resiliency and the Black Death: No apparent loss of mitogenomic diversity due to the Black Death in medieval London and Denmark

Klunk, J., Duggan, A. T., Redfern, R. C., Gamble, J. A., Boldsen, J. L., Golding, G. B., Walter, B. S., Eaton, K., Stangroom, J., Rouillard, J. M., et al. (2019) · American Journal of Physical Anthropology · doi:10.1002/ajpa.23820 · Cited by 22

Evaluation of Diammonium hydrogen phosphate and Ca(OH)2 nanoparticles for consolidation of ancient bones

Salvatore, A., Vai, S., Caporali, S., Caramelli, D., Lari, M., & Carretti, E. (2019) · Journal of Cultural Heritage · doi:10.1016/j.culher.2019.07.022 · Cited by 20

Combined methodologies for gaining much information from ancient dental calculus: testing experimental strategies for simultaneously analysing DNA and food residues

Modi, A., Pisaneschi, L., Zaro, V., Vai, S., Vergata, C., Casalone, E., Caramelli, D., Moggi‐Cecchi, J., Lippi, M. M., & Lari, M. (2020) · Archaeological and Anthropological Sciences · doi:10.1007/s12520-019-00983-5 · Cited by 21

The impact of major warming at 14.7 ka on environmental changes and activity of Final Palaeolithic hunters at a local scale (Orawa-Nowy Targ Basin, Western Carpathians, Poland

Lemanik, A., Baca, M., Wertz, K., Socha, P., Popović, D., Tomek, T., Lipecki, G., Kraszewska, A., Miękina, B., Żeromska, A., et al. (2020) · Archaeological and Anthropological Sciences · doi:10.1007/s12520-020-01020-6 · Cited by 20

Estimating molecular preservation of the intestinal microbiome via metagenomic analyses of latrine sediments from two medieval cities

Sabin, S. J., Yeh, H., Pluskowski, A., Clamer, C., Mitchell, P. D., & Bos, K. I. (2020) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2019.0576 · Cited by 21

Sex-Biased Population Admixture Mediated Subsistence Strategy Transition of Heishuiguo People in Han Dynasty Hexi Corridor

Xiong, J., Du, P., Chen, G., Tao, Y., Zhou, B., Yang, Y., Wang, H., Yu, Y., Chang, X., Allen, E., et al. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2022.827277 · Cited by 20

First record of the “small cave bear” in Bulgaria and the taxonomic status of bears of the Ursus savini Andrews – Ursus rossicus Borissiak group

Spassov, N., Hristova, L., Ivanova, S., & Georgiev, I. (2017) · Fossil Imprint · doi:10.2478/if-2017-0015 · Cited by 20

Implications of age and sex determinations of ancient Maya sacrificial victims at Midnight Terror Cave

Verdugo, C., Zhu, K. T., Prout, M. G., Broomandkhoshbacht, N., Galloway, A., Fehren‐Schmitz, L., & Brady, J. E. (2020) · International Journal of Osteoarchaeology · doi:10.1002/oa.2874 · Cited by 19

A sedimentary ancient DNA perspective on human and carnivore persistence through the Late Pleistocene in El Mirón Cave, Spain

Gelabert, P., Oberreiter, V., Straus, L. G., Morales, M. R. G., Sawyer, S., Marín-Arroyo, A. B., Geiling, J. M., Exler, F., Brück, F., Franz, S., et al. (2025) · Nature Communications · doi:10.1038/s41467-024-55740-7 · Cited by 19

Neolithic animal domestication as seen from ancient DNA

Scheu, A. (2017) · Quaternary International · doi:10.1016/j.quaint.2017.02.009 · Cited by 21

Maternal genetic history of ancient Tibetans over the past 4000 years

Zhang, G., Cui, C., Wangdue, S., Lü, H., Chen, H., Xi, L., He, W., Yuan, H., Tsring, T., Chen, Z., et al. (2023) · Journal of genetics and genomics/Journal of Genetics and Genomics · doi:10.1016/j.jgg.2023.03.007 · Cited by 19

Historic Sampling of a Vanishing Beast: Population Structure and Diversity in the Black Rhinoceros

Sánchez-Barreiro, F., Cahsan, B. D., Westbury, M. V., Sun, X., Margaryan, A., Fontsere, C., Bruford, M. W., Russo, I. M., Kalthoff, D. C., Sicheritz‐Pontén, T., et al. (2023) · Molecular Biology and Evolution · doi:10.1093/molbev/msad180 · Cited by 19

Developing the Protocol Infrastructure for DNA Sequencing Natural History Collections

Ferrari, G., Esselens, L., Hart, M. L., Janssens, S., Kidner, C. A., Mascarello, M., Peñalba, J. V., Pezzini, F. F., von Rintelen, T., Sonet, G., et al. (2023) · Biodiversity Data Journal · doi:10.3897/bdj.11.e102317 · Cited by 19

Ancient bear bone yields a sequence

(2013) · Nature · doi:10.1038/501285c

Extending the spectrum of DNA sequences retrieved from ancient bones and teethPreprint

Glocke, I., & Meyer, M. (2017) · Genome Research · doi:10.1101/gr.219675.116 · Cited by 122

Sequencing mtDNA of the cave bear Ursus spelaeus from the Bavarian Alps is feasible by nested and touchdown PCR

Kühn, R., Schröder, W., & Rottmann, O. (2001) · ACTA THERIOLOGICA · doi:10.1007/bf03192417 · Cited by 8

Typing single polymorphic nucleotides in mitochondrial DNA as a way to access Middle Pleistocene DNA

Valdiosera, C. E., García, N., Dalén, L., Smith, C. I., Kahlke, R., Lidén, K., Angerbjörn, A., Arsuaga, J. L., & Götherström, A. (2006) · Biology Letters · doi:10.1098/rsbl.2006.0515 · Cited by 37

Mammalian mitochondrial capture, a tool for rapid screening of DNA preservation in faunal and undiagnostic remains, and its application to Middle Pleistocene specimens from Qesem Cave (Israel)

Slon, V., Glocke, I., Barkai, R., Gopher, A., Hershkovitz, I., & Meyer, M. (2015) · Quaternary International · doi:10.1016/j.quaint.2015.03.039 · Cited by 50