Optimized CRISPR/Cas tools for efficient germline and somatic genome engineering in Drosophila

A Programmable Dual-RNA–Guided DNA Endonuclease in Adaptive Bacterial Immunity

Jinek, M., Chylinski, K., Fonfara, I., Hauer, M., Doudna, J. A., & Charpentier, E. (2012) · Science · doi:10.1126/science.1225829 · Cited by 17,116

Targeted gene expression as a means of altering cell fates and generating dominant phenotypes

Brand, A. H., & Perrimon, N. (1993) · Development · doi:10.1242/dev.118.2.401 · Cited by 9,510

RNA-Guided Human Genome Engineering via Cas9

Mali, P., Yang, L., Esvelt, K. M., Aach, J., Guell, M., DiCarlo, J. E., Norville, J. E., & Church, G. M. (2013) · Science · doi:10.1126/science.1232033 · Cited by 9,210

Mutations affecting segment number and polarity in Drosophila

Nüsslein‐Volhard, C., & Wieschaus, E. F. (1980) · Nature · doi:10.1038/287795a0 · Cited by 4,370

One-step generation of mice carrying mutations in multiple genes by CRISPR/Cas-mediated genome engineering

Wang, H., Yang, H., Shivalila, C. S., Dawlaty, M. M., Cheng, A. W., Zhang, F., & Jaenisch, R. (2013) · Cell · doi:10.1016/j.cell.2013.04.025 · Cited by 3,495

Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity

Ran, F. A., Hsu, P. D., Lin, C.-Y., Gootenberg, J. S., Konermann, S., Trevino, A. E., Scott, D. A., Inoue, A., Matoba, S., Zhang, Y., et al. (2013) · Cell · doi:10.1016/j.cell.2013.08.021 · Cited by 3,299

High-Frequency off-Target Mutagenesis Induced by CRISPR-Cas Nucleases in Human Cells

Fu, Y., Foden, J. A., Khayter, C., Maeder, M. L., Reyon, D., Joung, J. K., & Sander, J. D. (2013) · Nature Biotechnology · doi:10.1038/nbt.2623 · Cited by 3,292

RNA-programmed genome editing in human cells

Jinek, M., East, A., Cheng, A., Lin, S., Ma, E., & Doudna, J. (2013) · eLife · doi:10.7554/elife.00471 · Cited by 2,098

Improving CRISPR-Cas nuclease specificity using truncated guide RNAs

Fu, Y., Sander, J. D., Reyon, D., Cascio, V. M., & Joung, J. K. (2014) · Nature Biotechnology · doi:10.1038/nbt.2808 · Cited by 1,993 · cited 1×

An optimized transgenesis system for Drosophila using germ-line-specific φC31 integrases

Bischof, J., Maeda, R., Hediger, M., Karch, F., & Basler, K. (2007) · Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.0611511104 · Cited by 1,959

Sensory neuron population expansion enhances odor tracking without sensitizing projection neuronsPreprint

Takagi, S., Sancer, G., Abuin, L., Stupski, S. D., Arguello, J. R., Prieto-Godino, L. L., Stern, D. L., Cruchet, S., Álvarez-Ocaña, R., Wienecke, C. F. R., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.09.15.556782 · Cited by 5

Expanding the Drosophila toolkit for dual control of gene expression

Zirin, J. D., Jusiak, B., Lopes, R., Ewen‐Campen, B., Bosch, J. A., Risbeck, A., Forman, C., Villalta, C., Hu, Y., & Perrimon, N. (2024) · eLife · doi:10.7554/elife.94073.3 · Cited by 4

Two Isoforms of serpent Containing Either One or Two GATA Zinc Fingers Provide Functional Diversity During Drosophila Development

Moussalem, D., Augé, B., Stefano, L. D., Osman, D., Gobert, V., & Haenlin, M. (2022) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2021.795680 · Cited by 4

A genetic screen of transcription factors in the Drosophila melanogaster abdomen identifies novel pigmentation genes

Petrosky, S. J., Williams, T. M., & Rebeiz, M. (2024) · G3 · doi:10.1093/g3journal/jkae097 · Cited by 4

Dissociation of Drosophila Evi‐Wg Complex Occurs Post Apical Internalization in the Maturing Acidic Endosomes

Sharma, S., & Chaudhary, V. (2024) · Traffic · doi:10.1111/tra.12955 · Cited by 3

The fushi tarazu zebra element is not required for Drosophila viability or fertility

Graham, P. L., Fischer, M. D., Giri, A., & Pick, L. (2021) · G3 Genes Genomes Genetics · doi:10.1093/g3journal/jkab300 · Cited by 4

Canonical Wnt Signaling Promotes Formation of Somatic Permeability Barrier for Proper Germ Cell Differentiation

Chen, T., Lin, K., Yang, S., Tseng, C., Wang, Y., Lin, C., Luo, L., Cai, Y., & Hsu, H. (2022) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2022.877047 · Cited by 4

Immunohistochemical Analysis of Nuclear Lamina Structures in the Drosophila Ovary Using CRISPR-Tagged Genes

Duan, T., Rodríguez, F., & Geyer, P. (2023) · Methods in molecular biology · doi:10.1007/978-1-0716-2970-3_6 · Cited by 4

One-step CRISPR-based Strategy for Endogenous Gene Tagging in Drosophila melanogaster

Xiao, Y., Yuan, Y., & Yadlapalli, S. (2024) · Journal of Visualized Experiments · doi:10.3791/64729 · Cited by 4

Ehbp1 orchestrates orderly sorting of Wnt/Wingless to the basolateral and apical cell membranes

Gao, Y., Feng, J., Zhang, Y., Yi, M., Zhang, L., Yan, Y., Zhu, A. J., & Liu, M. (2024) · EMBO Reports · doi:10.1038/s44319-024-00289-1 · Cited by 4

Versatile gamma-tubulin complexes contribute to the dynamic organization of MTOCs during Drosophila spermatogenesis

Alzyoud, E. I., Németh, D., Vedelek, V., Szögi, T., Tóth, V. P., Krecsmarik, M., Ábrahám, E., Lipinszki, Z., & Sinka, R. (2024) · Communications Biology · doi:10.1038/s42003-024-07090-9 · Cited by 4

A U3 snoRNA is required for the regulation of chromatin dynamics and antiviral response in Drosophila melanogaster

Jain, S., Planells, J., Regadas, I., Barrett, D., von Euler, A., Sinha, I., Lindberg, B. G., Hesson, J. C., Swacha, P., Gekara, N. O., et al. (2025) · Nucleic Acids Research · doi:10.1093/nar/gkaf715 · Cited by 4

Using Drosophila Models and Tools to Understand the Mechanisms of Novel Human Cancer Driver Gene Function

Villegas, S. N., Ferrés-Marcó, D., & Domínguez, M. (2019) · Advances in experimental medicine and biology · doi:10.1007/978-3-030-23629-8_2 · Cited by 3

Distinct requirements for Pho, Sfmbt, and Ino80 for cell survival in Drosophila

Elizar’ev, P. V., Finkl, K., & Müller, J. (2021) · Genetics · doi:10.1093/genetics/iyab096 · Cited by 4

Superresolution microscopy reveals actomyosin dynamics in medioapical arrays

Moore, R. P., Fogerson, S. M., Tulu, U. S., Yu, J. W., Cox, A. H., Sican, M. A., Li, D., Legant, W. R., Weigel, A. V., Crawford, J. M., et al. (2022) · Molecular Biology of the Cell · doi:10.1091/mbc.e21-11-0537 · Cited by 4

Orthopedia expression during Drosophila melanogaster nervous system development and its regulation by microRNA-252

Hildebrandt, K., Klöppel, C., Gogel, J., Hartenstein, V., & Walldorf, U. (2022) · Developmental Biology · doi:10.1016/j.ydbio.2022.09.006 · Cited by 3

A cis-regulatory sequence of the selector gene vestigial drives the evolution of wing scaling in Drosophila species

Farfán‐Pira, K. J., Martínez-Cuevas, T. I., Evans, T. A., & Nahmad, M. (2023) · Journal of Experimental Biology · doi:10.1242/jeb.244692 · Cited by 4

The MADF-BESS Protein CP60 Is Recruited to Insulators via CP190 and Has Redundant Functions in Drosophila

Melnikova, L. S., Молодина, В. В., Babosha, V., Kostyuchenko, M. V., Georgiev, P. G., & Golovnin, A. K. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms241915029 · Cited by 4

Recent progress in using Drosophila as a platform for human genetic disease research

Yoon, W. H. (2023) · Journal of genetic medicine · doi:10.5734/jgm.2023.20.2.39 · Cited by 1

A drug stabilizable GAL80ds for conditional control of gene expression via GAL4-UAS and CRISPR-Cas9 systems in Drosophila

Kogenaru, V., Isalan, M., & Kogenaru, M. (2024) · Scientific Reports · doi:10.1038/s41598-024-56343-4 · Cited by 4

Solubility and subcellular localization of the three Drosophila RDGC phosphatase variants are determined by acylation

Strauch, L., Pfannstiel, J., Huber, A., & Voolstra, O. (2018) · FEBS Letters · doi:10.1002/1873-3468.13163 · Cited by 4

Direct control of somatic stem cell proliferation by the Drosophila testis stem cell nichePreprint

Albert, E. A., Puretskaia, O. A., Terekhanova, N. V., & Bökel, C. (2017) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/110619 · Cited by 4

Ankle2, a Target of Zika Virus, Controls Asymmetric Cell Division of Neuroblasts and Uncovers a Novel Microcephaly PathwayPreprint

Link, N., Chung, H.-L., Jolly, A., Withers, M., Tepe, B., Arenkiel, B. R., Shah, P. S., Krogan, N. J., Aydın, H., Geçkinli, B. B., et al. (2019) · SSRN Electronic Journal · doi:10.2139/ssrn.3389483 · Cited by 4

In response to Li et al. : Linker histones function in Drosophila embryogenesisPreprint

Carbonell, A., Henn, L., Pérez-Roldán, J., Tamirisa, S., Szabó, A., Boros, I., & Azorı́n, F. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.03.21.001529 · Cited by 4

A rapidly evolving actin mediates fertility and developmental tradeoffs in DrosophilaPreprint

Schroeder, C. M., Tomlin, S. A., Valenzuela, J. R., & Malik, H. S. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.09.28.317503 · Cited by 4

Hugin + neurons link the sleep homeostat to circadian clock neuronsPreprint

Schwarz, J. E., King, A. N., Hsu, C. T., Barber, A. F., & Sehgal, A. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.04.29.068627 · Cited by 4

Functional unknomics: closing the knowledge gap to accelerate biomedical researchPreprint

Rocha, J., Jayaram, S. A., Stevens, T. J., Muschalik, N., Shah, R. D., Emran, S., Robles, C., Freeman, M., & Munro, S. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.06.28.497983 · Cited by 4

HEATR5B associates with dynein-dynactin and selectively promotes motility of AP1-bound endosomal membranesPreprint

Madan, V., Albacete-Albacete, L., Jin, L., Scaturro, P., Watson, J. L., Muschalik, N., Begum, F., Jérôme Boulanger, A., Bauer, K. F., Kiebler, M. A., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.03.14.532574 · Cited by 4

Red Light-Activated Reversible Inhibition of Protein Functions by Assembled Trap

Zhou, P., Jia, Y., Zhang, T., Abudukeremu, A., He, X., Zhang, X., Liu, C., Li, W., Li, Z., Sun, L., et al. (2025) · ACS Synthetic Biology · doi:10.1021/acssynbio.4c00585 · Cited by 3

Evolution of taste processing shifts dietary preference

Bertolini, E., Münch, D., Pascual, J., Sgammeglia, N., Bruzzone, M., Ribeiro, C., & Auer, T. O. (2026) · Nature · doi:10.1038/s41586-025-09766-6 · Cited by 3

Behavioral screening defines the molecular Parkinsonism-related subgroups in Drosophila

Kaempf, N., Valadas, J. S., Robberechts, P., Schoovaerts, N., Praschberger, R., Ortega, A., Nachman, E., Ghezzi, L., Kilic, A., Chabot, D., et al. (2026) · Nature Communications · doi:10.1038/s41467-026-70303-8 · Cited by 20

Evolutionary basis of male same-sex sexual behavior by multiple pheromone switches in Drosophila

Ouadah, Y., Naragon, T. H., Smihula, H. M., Behrman, E. L., Khallaf, M. A., Ding, Y., Stern, D. L., Parker, J., & Anderson, D. J. (2026) · Current Biology · doi:10.1016/j.cub.2026.02.046 · Cited by 6

Multi-omic mapping of Drosophila protein secretomes reveals tissue-specific origins and inter-organ trafficking

Bosch, J. A., Beltran, P. M. J., Cavers, C., LaGraff, J. T., Melanson, R., Singh, A., Chen, W., Hu, Y., Tattikota, S. G., Liu, Y., et al. (2026) · Nature Communications · doi:10.1038/s41467-026-71763-8 · Cited by 3

Dichotomouscis-regulatory motifs mediate the maturation of the neuromuscular junction by retrograde BMP signaling

Vuilleumier, R., Miao, M., Giró, S. M., Ell, C.-M., Flibotte, S., Lian, T., Kauwe, G., Collins, A., Ly, S. M., Pyrowolakis, G., et al. (2022) · Nucleic Acids Research · doi:10.1093/nar/gkac730 · Cited by 3

Engineering of TurboID-Wingless for the identification of Wingless interactors through in vivo proximity labelling

Androniciuc, A.-M., Tate, E. W., & Vincent, J. (2024) · PubMed Central · doi:10.17912/micropub.biology.001210 · Cited by 3

A library of lineage-specific driver lines connects developing neuronal circuits to behavior in the Drosophila ventral nerve cord

Soffers, J. H., Beck, E., Sytkowski, D. J., Maughan, M. E., Devasri, D., Zhu, Y. Z., Wilson, B. A., Chen, Y., Erclik, T., Truman, J. W., et al. (2025) · eLife · doi:10.1101/2024.11.27.625713 · Cited by 3

The Classic Lobe Eye Phenotype of Drosophila Is Caused by Transposon Insertion-Induced Misexpression of a Zinc-Finger Transcription Factor

Son, W., & Choi, K. (2020) · Genetics · doi:10.1534/genetics.120.303486 · Cited by 3

Major SCP/TAPS protein expansion in Lucilia cuprina is associated with novel tandem array organisation and domain architecture

Prawer, Y. D. J., Stroehlein, A. J., Young, N. D., Kapoor, S., Hall, R. S., Ghazali, R., Batterham, P., Gasser, R. B., Perry, T., & Anstead, C. A. (2020) · Parasites & Vectors · doi:10.1186/s13071-020-04476-6 · Cited by 3

Functional Studies of Genetic Variants Associated with Human Diseases in Notch Signaling-Related Genes Using Drosophila

Yang, S.-A., Salazar, J. L., Li‐Kroeger, D., & Yamamoto, S. (2022) · Methods in molecular biology · doi:10.1007/978-1-0716-2201-8_19 · Cited by 4

Inducible degradation of the Drosophila Mediator subunit Med19 reveals its role in regulating developmental but not constitutively-expressed genes

Jullien, D., Guillou, E., Bernat-Fabre, S., Payet, A., Bourbon, H.-M. G., & Boube, M. (2022) · PLoS ONE · doi:10.1371/journal.pone.0275613 · Cited by 3

CRISPR/Cas9-mediated knock-in in ebony gene using a PCR product donor template in Drosophila

Bui, K. C., & Kamiyama, D. (2023) · Gene and Genome Editing · doi:10.1016/j.ggedit.2023.100025 · Cited by 3

PIGB maintains nuclear lamina organization in skeletal muscle of Drosophila

Yamamoto‐Hino, M., Ariura, M., Tanaka, M., Iwasaki, Y. W., Kawaguchi, K., Shimamoto, Y., & Goto, S. (2023) · The Journal of Cell Biology · doi:10.1083/jcb.202301062 · Cited by 3

Temporal dynamics of apoptosis-induced proliferation in pupal wing development: implications for regenerative ability

Ahmed-de-Prado, S., Estella, C., & Baonza, A. (2024) · BMC Biology · doi:10.1186/s12915-024-01894-1 · Cited by 3

Two distinct mechanisms of Plexin A function in Drosophila optic lobe lamination and morphogenesis

Bustillo, M. E., Douthit, J., Astigarraga, S., & Treisman, J. E. (2024) · Development · doi:10.1242/dev.202237 · Cited by 2

Nebulous without white: annotated long-read genome assembly and CRISPR/Cas9 genome engineering in Drosophila nebulosa

Sottolano, C. J., Revaitis, N. T., Geneva, A. J., & Yakoby, N. (2022) · G3 Genes Genomes Genetics · doi:10.1093/g3journal/jkac231 · Cited by 2

Site-Specific Recombination for Gene Locus-Directed Transgene Integration and Modification

Ahmed, H. M. M., & Wimmer, E. A. (2022) · CABI eBooks · doi:10.1079/9781800621176.0005 · Cited by 3

The Drosophila Epidermal Growth Factor Receptor does not act in the nucleus

Courgeon, M., He, D. Q., Liu, H. H., Legent, K., & Treisman, J. E. (2018) · Journal of Cell Science · doi:10.1242/jcs.220251 · Cited by 3

Functional characterization of the three Drosophila retinal degeneration C (RDGC) protein phosphatase isoforms

Voolstra, O., Strauch, L., Mayer, M., & Huber, A. (2018) · PLoS ONE · doi:10.1371/journal.pone.0204933 · Cited by 3

The DEAD-Box Protein Rok1 Coordinates Ribosomal RNA Processing in Association with Rrp5 in Drosophila

Chen, J., Huang, Y., & Zhang, K. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23105685 · Cited by 3

Or22 allelic variation alone does not explain differences in discrimination of yeast-produced volatiles by D. melanogasterPreprint

Elya, C., Quan, A. S., Barrett, K. M. S., & Eisen, M. B. (2017) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/186064 · Cited by 3

sisterless A is required for activation of Sex lethal in the Drosophila germlinePreprint

Goyal, R., Baxter, E. M., & Doren, M. V. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2019.12.17.880070 · Cited by 3

Evaluation of gene knock-outs by CRISPR as potential targets for the genetic engineering of the mosquito Culex quinquefasciatusPreprint

Feng, X., Kambic, L., Nishimoto, J. H. K., Reed, F. A., Denton, J. A., Sutton, J. T., & Gantz, V. M. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.10.21.349704 · Cited by 3

A developmental framework linking neurogenesis and circuit formation in the Drosophila CNSPreprint

Mark, B., Lai, S.-L., Zarin, A. A., Manning, L., Litwin-Kumar, A., Cardona, A., Truman, J. W., & Doe, C. Q. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/617936 · Cited by 3

Nuclear Export of Drosophila PERIOD contributes to temperature compensation of the circadian clockPreprint

Giesecke, A. V., Johnstone, P. S., Lamaze, A., Landskron, J., Atay, E., Chen, K., Top, D., & Stanewsky, R. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.10.25.465663 · Cited by 3

Wnt Signaling Couples G2 Phase Control with Differentiation During HematopoiesisPreprint

Goins, L. M., Girard, J. R., Mondal, B. C., Buran, S., Su, C. C., Tang, R., Biswas, T., & Banerjee, U. K. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.06.29.547151 · Cited by 3

Targeted editing of pericentromeric satellite DNA alters sensitivity to meiotic drivePreprint

Eickbush, D. G., Rahmat, J., Lindsay, M., Bowers, J., Fuda, N. J., & Larracuente, A. M. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.01.18.700156 · Cited by 3

Site-Directed DNA Sequence Modification Using CRISPR/Cas 9

Concha, C., & Papa, R. (2022) · CABI eBooks · doi:10.1079/9781800621176.0007 · Cited by 2

Aberrant enterocyte progenitor clustering as an early life biomarker of Drosophila aging

Neophytou, C., Teloni, S., Koumouri, M., Stefanutti, M., Gianni, P., Yılmaz, V., Strati, K., & Apidianakis, Y. (2025) · iScience · doi:10.1016/j.isci.2025.111967 · Cited by 3

Temporal transcriptional regulation of mitochondrial morphology primes activity-dependent circuit connectivity

Mohylyak, I., Andriatsilavo, M., Bengochea, M., Pascual-Caro, C., Asfogo, N., Fonseca-Topp, S., Danda, N., Cassar, M., Marie, C., Atak, Z. K., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-62908-2 · Cited by 3

Tissue mechanics and systemic signaling safeguard epithelial tissue against spindle misorientation

Bosveld, F., Tesson, B., van Leen, E., Amirebrahimi, S., Thinat, R., & Bellaı̈che, Y. (2026) · Developmental Cell · doi:10.1016/j.devcel.2026.01.012 · Cited by 4

The Fd4 transcription factor translates transient spatial cues in progenitors into long-term lineage identity

Lai, S.-L., & Doe, C. Q. (2026) · eLife · doi:10.7554/elife.109188.3 · Cited by 2

Disruption of small RNAs and mechanistic variation in Segregation Distorter: A sperm-killing drive system in Drosophila melanogaster

Edvalson, L. T., Wei, X., Chang, C.-H., & Larracuente, A. M. (2026) · PLoS Genetics · doi:10.1371/journal.pgen.1012235 · Cited by 2

Introduction to Synthetic Biology

Singh, V. (2020) · Springer eBooks · doi:10.1007/978-981-15-0081-7_1 · Cited by 2

Different transcriptional responses by the CRISPRa system in distinct types of heterochromatin in Drosophila melanogaster

Ortega-Yáñez, A., Cruz-Ruiz, S., Vâzquez, M., & Zurita, M. (2022) · Scientific Reports · doi:10.1038/s41598-022-15944-7 · Cited by 2

Transposon and Transgene Tribulations in Mosquitoes: A Perspective of piRNA Proportions

Lau, N. C., & Macias, V. M. (2024) · DNA · doi:10.3390/dna4020006 · Cited by 2

Development of a New Model System to Study Long-Distance Interactions Supported by Architectural Proteins

Melnikova, L. S., Молодина, В. В., Georgiev, P. G., & Golovnin, A. K. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25094617 · Cited by 3

Probing Baculovirus Vector Gene Essentiality for Foreign Gene Expression Using a CRISPR-Cas9 System

Chakraborty, M., Powichrowski, J., Bruder, M. R., Nielsen, L., Sung, C., Boegel, S. J., & Aucoin, M. G. (2024) · Methods in molecular biology · doi:10.1007/978-1-0716-3961-0_9 · Cited by 2

tsCRISPR based identification of Rab proteins required for the recycling of Drosophila TRPL ion channel

Zeger, M., Stanisławczyk, L. S., Bulić, M., Binder, A. M., & Huber, A. (2024) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2024.1444953 · Cited by 2

β2-tubulin and its promoter in the brown planthopper: A versatile tool for genetic control strategies

Chen, J., Zhang, C.-C., Sun, J., Zhang, Y., Luo, M.-S., & Zhang, W.-Q. (2024) · Insect Biochemistry and Molecular Biology · doi:10.1016/j.ibmb.2024.104244 · Cited by 2

Adapting Next-Generation Sequencing to in Process CRISPR-Cas9 Genome Editing of Recombinant AcMNPV Vectors: From Shotgun to Tiled-Amplicon Sequencing

Chakraborty, M., Nielsen, L., Nash, D., Nissimov, J. I., Charles, T. C., & Aucoin, M. G. (2025) · Viruses · doi:10.3390/v17030437 · Cited by 2

Using CRISPR-Cas9 to Study ERK Signaling in Drosophila

Forés, M., Papagianni, K., Rodríguez-Muñoz, L., & Jiménez, G. (2016) · Methods in molecular biology · doi:10.1007/978-1-4939-6424-6_26 · Cited by 2

Genomic Tagging of AGO1 Using CRISPR/Cas9-Mediated Homologous Recombination

Ghosh, S., & Liu, J. (2017) · Methods in molecular biology · doi:10.1007/978-1-4939-7339-2_15 · Cited by 2

TRiP stocks contain a previously uncharacterized loss-of-function sevenless allele

Escobedo, S. E., Zirin, J. D., & Weake, V. M. (2019) · PubMed Central · doi:10.17912/micropub.biology.000097 · Cited by 2

CRISPR/Cas9 Genome Editing to Study Nervous System Development in Drosophila

Fritsch, C., & Sprecher, S. G. (2019) · Methods in molecular biology · doi:10.1007/978-1-4939-9732-9_10 · Cited by 2

Drosophila balancer reengineering using polycistronic gRNA for CRISPR/Cas9 gene editing

Benner, L., & Oliver, B. (2018) · PubMed Central · doi:10.17912/sg7d-sd61 · Cited by 2

An introduction and use of the CRISPR-Cas systems

Singh, V. (2021) · Progress in molecular biology and translational science · doi:10.1016/bs.pmbts.2020.12.011 · Cited by 2

Improving one-step scarless genome editing in Drosophila melanogaster by combining ovoD co-CRISPR selection with sgRNA target site masking

Götze, K. J., Mrestani, A., Beckmann, P., Krohn, K., Duc, D. L., Velluva, A., Böhme, M. A., Heckmann, M., Jamra, R. A., Lemke, J. R., et al. (2022) · Biology Methods and Protocols · doi:10.1093/biomethods/bpac003 · Cited by 3

Drosophila MESR4 Gene Ensures Germline Stem Cell Differentiation by Promoting the Transcription of bag of marbles

Szarka-Kovács, A. B., Takács, Z., Bence, M., Erdélyi, M., & Jankovics, F. (2022) · Cells · doi:10.3390/cells11132056 · Cited by 2

The vestigial Quadrant Enhancer is dispensable for pattern formation and development of the Drosophila wing

Farfán‐Pira, K. J., Martínez-Cuevas, T. I., Reyes, R., Evans, T. A., & Nahmad, M. (2022) · PubMed Central · doi:10.17912/micropub.biology.000585 · Cited by 2

Anchor Away: A System for Fast Inhibition of Proteins in Drosophila

Bosch, P. S. (2022) · Methods in molecular biology · doi:10.1007/978-1-0716-2541-5_11 · Cited by 2

Prime Editing for Precise Genome Engineering in Drosophila

Bosch, J. A., & Perrimon, N. (2022) · Methods in molecular biology · doi:10.1007/978-1-0716-2541-5_5 · Cited by 2

Evaluation of microRNA variant maturation prior to genome edition

Busseau, I., Mockly, S., Houbron, É., Somaï, H., & Seitz, H. (2023) · Biochimie · doi:10.1016/j.biochi.2023.06.007 · Cited by 2

A novel adipose loss-of-function mutant in Drosophila

Losurdo, N. A., Bibo, A., Bedke, J., & Link, N. (2024) · Fly · doi:10.1080/19336934.2024.2352938 · Cited by 2

Functional Comparison of Short and Long Isoforms of the TRF2 Protein in Drosophila melanogaster

Osadchiy, I. S., Georgiev, P. G., & Maksimenko, O. G. (2019) · Doklady Biochemistry and Biophysics · doi:10.1134/s1607672919030165 · Cited by 2

Design of Repair Templates for CRISPR-Cas9-Triggered Homologous Recombination in Caenorhabditis elegans

Kim, H., & Zhang, X. (2021) · Springer protocols handbooks/Springer protocols · doi:10.1007/978-1-0716-1657-4_24 · Cited by 2

The development of gene drives for genetic control of the malaria mosquito

Hammond, A. (2016) · Spiral (Imperial College London) · doi:10.25560/53131 · Cited by 2

CLADES: a programmable sequence of reporters for lineage analysisPreprint

García‐Marqués, J., Yang, C.-P., Espinosa-Medina, I., Koyama, M., & Lee, T. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/655308 · Cited by 2

DHR51 as a coordinator of heme biosynthesis and steroid hormone production to time metamorphosis in Drosophila melanogaster

Phelps, B. (2019) · ERA: Education and Research Archive (University of Alberta) · doi:10.7939/r3-sw5p-vp97 · Cited by 2

Wnt ligands are not required for planar cell polarity in the Drosophila wing or notumPreprint

Ewen‐Campen, B., Comyn, T., Vogt, E., & Perrimon, N. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.06.05.137182 · Cited by 2

The gut hormone Allatostatin C regulates food intake and metabolic homeostasis under nutrient stressPreprint

Kubrak, O. I., Jensen, L., Ahrentløv, N., Koyama, T., Malita, A., Naseem, M. T., Lassen, M., Nagy, S., Texada, M. J., Halberg, K. A., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.12.05.412874 · Cited by 2

Temporally dynamic antagonism between transcription and chromatin compaction controls stochastic photoreceptor specificationPreprint

Voortman, L., Anderson, C., Urban, E., Yuan, M., Tran, S., Neuhaus‐Follini, A., Derrick, J., Gregor, T., & Johnston, R. J. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.08.27.457982 · Cited by 2

Developing genetic tools to control the Oriental Fruit Fly Bactrocera dorsalis [Diptera: Tephritidae]: potential strategies and molecular toolsPreprint

Traoré, N., Galizi, R., Kientega, M., Maïga, H., Nébié, K., Dabire, R. A., Bélem, A. M. G., & Diabaté, A. (2023) · doi:10.22541/au.167935457.73799637/v1 · Cited by 2

Epithelial Ca 2+ waves triggered by enteric neurons heal the gutPreprint

Petsakou, A., Liu, Y., Liu, Y., Comjean, A., Hu, Y., & Perrimon, N. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.08.14.553227 · Cited by 2

Tolerance thresholds underlie responses to DNA damage during germline developmentPreprint

Jansen, G., Gebert, D., Kumar, T. R., Simmons, E. S. G., Murphy, S., & Teixeira, F. K. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.01.07.574510 · Cited by 2

Redesigning the Drosophila histone gene cluster: An improved genetic platform for spatiotemporal manipulation of histone functionPreprint

Crain, A. T., Nevil, M., Leatham-Jensen, M. P., Reeves, K. B., Matera, A., McKay, D. J., & Duronio, R. J. (2024) · bioRxiv · doi:10.1101/2024.04.25.591202 · Cited by 8

Targeted mutagenesis of specific genomic DNA sequences in animals for the in vivo generation of variant librariesPreprint

Sanjuan, J. F., Diaz-Tirado, Y., Pai, T.-W., Turner, M. A., Collins, A., Davis, J., Fang, J., Medrano, C., Rourke, O., Bailer, P. F., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.06.10.598328 · Cited by 2

Class III PI3K is essential for Wingless secretion and Evi/Wls recycling in DrosophilaPreprint

Holzem, M., Pavlović, B., Munz, M., Strein, C., Gerwin, J., Lampe, M., Port, F., & Boutros, M. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.05.20.655092 · Cited by 2

Ataxin-2 preserves oocyte genome integrity by promoting timely premeiotic DNA replicationPreprint

Monteiro, V., Yu, C. W., Roselli, C., Bakthavachalu, B., Ramaswami, M., & Hurd, T. R. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.06.13.659559 · Cited by 2

Two classes of amine/glutamate multi-transmitter neurons innervate Drosophila internal male reproductive organsPreprint

Chaverra, M., Toney, J. P., Dardenne-Ankringa, L. D., Knee, J. T., Morris, A. R., Wadhams, J. B., Certel, S. J., & Stowers, R. S. (2025) · eLife · doi:10.7554/elife.108225 · Cited by 2

Genome Engineering of Drosophila with the CRISPR RNA-Guided Cas9 Nuclease

Gratz, S. J., Cummings, A. M., Nguyen, J. N., Hamm, D. C., Donohue, L. K., Harrison, M. M., Wildonger, J., & O’Connor-Giles, K. M. (2013) · Genetics · doi:10.1534/genetics.113.152710 · Cited by 1,000

CRISPR‐Cas9 Genome Editing in Drosophila

Gratz, S. J., Rubinstein, C. D., Harrison, M. M., Wildonger, J., & O’Connor-Giles, K. M. (2015) · Current Protocols in Molecular Biology · doi:10.1002/0471142727.mb3102s111 · Cited by 214

CRISPR-/Cas9-Mediated Precise and Efficient Genome Editing in Drosophila

Nyberg, K. G., & Carthew, R. W. (2022) · Methods in molecular biology · doi:10.1007/978-1-0716-2541-5_6 · Cited by 7

Upgraded CRISPR/Cas9 tools for tissue-specific mutagenesis in Drosophila

Koreman, G. T., Xu, Y., Hu, Q., Zhang, Z., Allen, S. E., Wolfner, M. F., Wang, B., & Han, C. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2014255118 · Cited by 29

Highly Specific and Efficient CRISPR/Cas9-Catalyzed Homology-Directed Repair in Drosophila

Gratz, S. J., Ukken, F. P., Rubinstein, C. D., Thiede, G. H., Donohue, L. K., Cummings, A. M., & O’Connor-Giles, K. M. (2014) · Genetics · doi:10.1534/genetics.113.160713 · Cited by 934