The DOI matches its Crossref record; 66 of the 66 references it cites were found in a registry or an index.
Mode of action uncovered for the specific reduction of methane emissions from ruminants by the small molecule 3-nitrooxypropanol
Open accessAbstract
Ruminants, such as cows, sheep, and goats, predominantly ferment in their rumen plant material to acetate, propionate, butyrate, CO2, and methane. Whereas the short fatty acids are absorbed and metabolized by the animals, the greenhouse gas methane escapes via eructation and breathing of the animals into the atmosphere. Along with the methane, up to 12% of the gross energy content of the feedstock is lost. Therefore, our recent report has raised interest in 3-nitrooxypropanol (3-NOP), which when added to the feed of ruminants in milligram amounts persistently reduces enteric methane emissions from livestock without apparent negative side effects [Hristov AN, et al. (2015) Proc Natl Acad Sci USA 112(34):10663-10668]. We now show with the aid of in silico, in vitro, and in vivo experiments that 3-NOP specifically targets methyl-coenzyme M reductase (MCR). The nickel enzyme, which is only active when its Ni ion is in the +1 oxidation state, catalyzes the methane-forming step in the rumen fermentation. Molecular docking suggested that 3-NOP preferably binds into the active site of MCR in a pose that places its reducible nitrate group in electron transfer distance to Ni(I). With purified MCR, we found that 3-NOP indeed inactivates MCR at micromolar concentrations by oxidation of its active site Ni(I). Concomitantly, the nitrate ester is reduced to nitrite, which also inactivates MCR at micromolar concentrations by oxidation of Ni(I). Using pure cultures, 3-NOP is demonstrated to inhibit growth of methanogenic archaea at concentrations that do not affect the growth of nonmethanogenic bacteria in the rumen.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“This enzyme catalyzes the last step of methane-forming reactions (Duin et al., 2016) and its inhibition can result in a reduction in rumen methanogenesis (up to 30%) without negative effects to the animal (Hristov et al., 2015).”
From Addressing global ruminant agricultural challenges through understanding the rumen microbiome: past, present, and future (2018) · cites this paper as Duin et al., 2016
Citations
Cites
Coot : model-building tools for molecular graphics
Emsley, P., & Cowtan, K. (2004) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444904019158 · Cited by 30,571
Climate Change 2007: The Physical Science Basis.
Schiavon, S., & Zecchin, R. (2007) · eScholarship (California Digital Library) · Cited by 16,994
Refinement of Macromolecular Structures by the Maximum-Likelihood Method
Murshudov, G. N., Vagin, A. A., & Dodson, E. J. (1997) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444996012255 · Cited by 14,796
Friesner, R. A., Banks, J. L., Murphy, R. B., Halgren, T. A., Klicic, J. J., Mainz, D. T., Repasky, M. P., Knoll, E. H., Shelley, M., Perry, J. K., et al. (2004) · Journal of Medicinal Chemistry · doi:10.1021/jm0306430 · Cited by 10,057
Friesner, R. A., Murphy, R. B., Repasky, M. P., Frye, L. L., Greenwood, J. R., Halgren, T. A., Sanschagrin, P. C., & Mainz, D. T. (2006) · Journal of Medicinal Chemistry · doi:10.1021/jm051256o · Cited by 7,012
Halgren, T. A., Murphy, R. B., Friesner, R. A., Beard, H. S., Frye, L. L., Pollard, W. T., & Banks, J. L. (2004) · Journal of Medicinal Chemistry · doi:10.1021/jm030644s · Cited by 5,340
MOLREP : an Automated Program for Molecular Replacement
Vagin, A. A., & Teplyakov, A. (1997) · Journal of Applied Crystallography · doi:10.1107/s0021889897006766 · Cited by 4,756
Energy conservation in chemotrophic anaerobic bacteria
Thauer, R. K., Jungermann, K., & Decker, K. (1977) · Bacteriological Reviews · doi:10.1128/br.41.1.100-180.1977 · Cited by 4,146
Self-citationiMOSFLM: a new graphical interface for diffraction-image processing withMOSFLM
Battye, T. G. G., Kontogiannis, L., Johnson, O., Powell, H. R., & Leslie, A. G. W. (2011) · Acta Crystallographica Section D Biological Crystallography · doi:10.1107/s0907444910048675 · Cited by 2,880
Johnson, K. A., & Johnson, D. E. (1995) · Journal of Animal Science · doi:10.2527/1995.7382483x · Cited by 2,714 · cited 2×
“The generation of methane by methanogenic archaea in the intestine of domestic ruminants lessens feed efficacy, as up to 12% of the gross energy ingested by the animal is lost this way (7).”
BackgroundMethanogenic archaea: ecologically relevant differences in energy conservation
Thauer, R. K., Kaster, A.-K., Seedorf, H., Buckel, W., & Hedderich, R. (2008) · Nature Reviews Microbiology · doi:10.1038/nrmicro1931 · Cited by 2,184
Wolber, G., & Langer, T. (2004) · Journal of Chemical Information and Modeling · doi:10.1021/ci049885e · Cited by 1,989
Simultaneously Mitigating Near-Term Climate Change and Improving Human Health and Food Security
Shindell, D., Kuylenstierna, J. C. I., Vignati, E., van Dingenen, R., Amann, M., Klimont, Z., Anenberg, S. C., Muller, N., Janssens-Maenhout, G., Raes, F., et al. (2012) · Science · doi:10.1126/science.1210026 · Cited by 1,382
Thauer, R. K. (1998) · Microbiology · doi:10.1099/00221287-144-9-2377 · Cited by 1,142
Hristov, A. N., Oh, J., Firkins, J. L., Dijkstra, J., Kebreab, E., Waghorn, G. C., Makkar, H. P. S., Adesogan, A. T., Yang, W. Z., Lee, C., et al. (2013) · Journal of Animal Science · doi:10.2527/jas.2013-6583 · Cited by 1,086
The global methane cycle: recent advances in understanding the microbial processes involved
Conrad, R. (2009) · Environmental Microbiology Reports · doi:10.1111/j.1758-2229.2009.00038.x · Cited by 1,037
Janssen, P. H. (2010) · Animal Feed Science and Technology · doi:10.1016/j.anifeedsci.2010.07.002 · Cited by 915
Mapping the Global Distribution of Livestock
Robinson, T. P., Wint, W., Conchedda, G., Boeckel, T. P. V., Ercoli, V., Palamara, E., Cinardi, G., D’Aietti, L., Hay, S. I., & Gilbert, M. (2014) · PLoS ONE · doi:10.1371/journal.pone.0096084 · Cited by 894
Physiological Ecology of Methanogens
Zinder, S. H. (1993) · Springer eBooks · doi:10.1007/978-1-4615-2391-8_4 · Cited by 772
Microbial ecosystem and methanogenesis in ruminants
Morgavi, D. P., Forano, E., Martin, C., & Newbold, C. J. (2010) · animal · doi:10.1017/s1751731110000546 · Cited by 694
Crystal Structure of Methyl-Coenzyme M Reductase: The Key Enzyme of Biological Methane Formation
Ermler, U., Grabarse, W., Shima, S., Goubeaud, M., & Thauer, R. K. (1997) · Science · doi:10.1126/science.278.5342.1457 · Cited by 615
Hristov, A. N., Oh, J., Giallongo, F., Frederick, T. W., Harper, M. T., Weeks, H. L., Branco, A. F., Moate, P. J., Deighton, M. H., Williams, S. R. O., et al. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1504124112 · Cited by 496 · cited 4×
“At the low concentrations of 3-NOP and of nitrite required to completely inhibit methanogenesis, these compounds are not toxic to animals (19, 35, 36).”
BackgroundInfluentialKaster, A.-K., Moll, J., Parey, K., & Thauer, R. K. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1016761108 · Cited by 389
Growth parameters (K s, ?max, Y s) of Methanobacterium thermoautotrophicum
Sch�nheit, P., Moll, J., & Thauer, R. K. (1980) · Archives of Microbiology · doi:10.1007/bf00414356 · Cited by 377
Nickel, cobalt, and molybdenum requirement for growth of Methanobacterium thermoautotrophicum
Sch�nheit, P., Moll, J., & Thauer, R. K. (1979) · Archives of Microbiology · doi:10.1007/bf00403508 · Cited by 365
Sejrsen, K., Hvelplund, T., & Nielsen, M. O. (2006) · Wageningen Academic Publishers eBooks · Cited by 346
Ungerfeld, E. M. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.00037 · Cited by 269
Flexible Ligand Docking with Glide
Repasky, M. P., Shelley, M. Y., & Friesner, R. A. (2007) · Current Protocols in Bioinformatics · doi:10.1002/0471250953.bi0812s18 · Cited by 255
Fermentation in the Rumen and Human Large Intestine
Wolin, M. J. (1981) · Science · doi:10.1126/science.7280665 · Cited by 231
Hydrogen as an intermediate in the rumen fermentation
Hungate, R. E. (1967) · Archives of Microbiology · doi:10.1007/bf00406327 · Cited by 227
Hagen, W. R. (2008) · CRC Press eBooks · doi:10.1201/9781420059588 · Cited by 218
Lovley, D. R., Greening, R. C., & Ferry, J. G. (1984) · Applied and Environmental Microbiology · doi:10.1128/aem.48.1.81-87.1984 · Cited by 169
Reynolds, C. K., Humphries, D. J., Kirton, P., Kindermann, M., Duval, S. M., & Steinberg, C. E. W. (2014) · Journal of Dairy Science · doi:10.3168/jds.2013-7397 · Cited by 169
Martínez, G., Abecia, L., Arco, A., Cantalapiedra-Hijar, G., Martín-García, A. I., Molina‐Alcaide, E., Kindermann, M., Duval, S. M., & Yáñez-Ruíz, D. R. (2014) · Journal of Dairy Science · doi:10.3168/jds.2013-7398 · Cited by 149
Zheng, Y., Kahnt, J., Kwon, I. H., Mackie, R. I., & Thauer, R. K. (2014) · Journal of Bacteriology · doi:10.1128/jb.02070-14 · Cited by 140
Romero-Pérez, A., Okine, E. K., McGinn, S. M., Guan, L., Oba, M., Duval, S. M., Kindermann, M., & Beauchemin, K. A. (2015) · Journal of Animal Science · doi:10.2527/jas.2014-8726 · Cited by 136
Denman, S. E., Martínez, G., Shinkai, T., Mitsumori, M., & McSweeney, C. S. (2015) · Frontiers in Microbiology · doi:10.3389/fmicb.2015.01087 · Cited by 132
Afonine, P. V., Grosse‐Kunstleve, R. W., Chen, V. B., Headd, J. J., Moriarty, N. W., Richardson, J. S., Richardson, D. C., Urzhumtsev, A., Zwart, P. H., & Adams, P. D. (2010) · Journal of Applied Crystallography · doi:10.1107/s0021889810015608 · Cited by 127
Effects of several inhibitors on pure cultures of ruminal methanogens*
Ungerfeld, E. M., Rust, S. R., Boone, D. R., & Liu, Y. (2004) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2004.02330.x · Cited by 107
Transport of coenzyme M (2-mercaptoethanesulfonic acid) in Methanobacterium ruminantium
Balch, W. E., & WOLFE, R. S. (1979) · Journal of Bacteriology · doi:10.1128/jb.137.1.264-273.1979 · Cited by 96
Coenzyme M, Essential for Growth of a Rumen Strain of Methanobacterium ruminantium
Taylor, C. D., McBride, B. C., WOLFE, R. S., & Bryant, M. P. (1974) · Journal of Bacteriology · doi:10.1128/jb.120.2.974-975.1974 · Cited by 86
Methyl‐coenzyme‐M reductase from Methanobacterium thermoautotrophicum (strain Marburg)
ELLERMANN, J., Rospert, S., Thauer, R. K., Bokranz, M., Klein, A., Voges, M., & Berkessel, A. (1989) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1989.tb14990.x · Cited by 84
BONACKER, L. G., BAUDNER, S., Mörschel, E., Böcher, R., & Thauer, R. K. (1993) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1993.tb18281.x · Cited by 83
Progress in the development of vaccines against rumen methanogens
Wedlock, D. N., Janssen, P. H., Leahy, S. C., Shu, D., & Buddle, B. M. (2013) · animal · doi:10.1017/s1751731113000682 · Cited by 83
Elucidating the Process of Activation of Methyl-Coenzyme M Reductase
Prakash, D., Wu, Y., Suh, S., & Duin, E. C. (2014) · Journal of Bacteriology · doi:10.1128/jb.01658-14 · Cited by 75
Goenrich, M., Mahlert, F., Duin, E. C., Bauer, C., Jaun, B., & Thauer, R. K. (2004) · JBIC Journal of Biological Inorganic Chemistry · doi:10.1007/s00775-004-0552-1 · Cited by 75
Scheller, S., Goenrich, M., Thauer, R. K., & Jaun, B. (2013) · Journal of the American Chemical Society · doi:10.1021/ja406485z · Cited by 72
On the mechanism of methyl-coenzyme M reductase
Ermler, U. (2005) · Dalton Transactions · doi:10.1039/b506697b · Cited by 64
Kubiak, P., Leja, K., Myszka, K., Celińska, E., Spychała, M., Szymanowska, D., Czaczyk, K., & Grajek, W. (2012) · Process Biochemistry · doi:10.1016/j.procbio.2012.05.012 · Cited by 63
Asanuma, N., Yokoyama, S., & Hino, T. (2014) · Animal Science Journal · doi:10.1111/asj.12307 · Cited by 56
A mathematical model to describe in vitro kinetics of H2 gas accumulation
Wang, M., Janssen, P. H., Sun, X., Muetzel, S., Tavendale, M. H., Tan, Z., & Pacheco, D. (2013) · Animal Feed Science and Technology · doi:10.1016/j.anifeedsci.2013.05.002 · Cited by 53
A Nickel–Alkyl Bond in an Inactivated State of the Enzyme Catalyzing Methane Formation
Hinderberger, D., Piskorski, R., Goenrich, M., Thauer, R. K., Schweiger, A., Harmer, J. R., & Jaun, B. (2006) · Angewandte Chemie International Edition · doi:10.1002/anie.200600366 · Cited by 51
Santoro, N., & Konisky, J. (1987) · Journal of Bacteriology · doi:10.1128/jb.169.2.660-665.1987 · Cited by 47
Biava, M., Porretta, G. C., Poce, G., Battilocchio, C., Alfonso, S., Rovini, M., Valenti, S., Giorgi, G., Calderone, V., Martelli, A., et al. (2011) · Journal of Medicinal Chemistry · doi:10.1021/jm200715n · Cited by 47
Cedervall, P. E., Dey, M., Li, X., Sarangi, R., Hedman, B., Ragsdale, S. W., & Wilmot, C. M. (2011) · Journal of the American Chemical Society · doi:10.1021/ja110492p · Cited by 43
Duin, E. C., Signor, L., Piskorski, R., Mahlert, F., Clay, M. D., Goenrich, M., Thauer, R. K., Jaun, B., & Johnson, M. K. (2004) · JBIC Journal of Biological Inorganic Chemistry · doi:10.1007/s00775-004-0549-9 · Cited by 39
McSweeney, C. S., Denman, S. E., & Mackie, R. I. (2005) · Springer eBooks · doi:10.1007/1-4020-3791-0_2 · Cited by 36
Genomic breed prediction in New Zealand sheep
Dodds, K. G., Auvray, B., Newman, S.-A., & McEwan, J. C. (2014) · BMC Genetics · doi:10.1186/s12863-014-0092-9 · Cited by 33
In vivo activation of methyl-coenzyme M reductase by carbon monoxide
Zhou, Y., Dorchak, A. E., & Ragsdale, S. W. (2013) · Frontiers in Microbiology · doi:10.3389/fmicb.2013.00069 · Cited by 30
Kuhner, C. H., Lindenbach, B. D., & WOLFE, R. S. (1993) · Journal of Bacteriology · doi:10.1128/jb.175.10.3195-3203.1993 · Cited by 28
Nivinskas, H., Šarlauskas, J., Anusevičius, Ž., Toogood, H. S., Scrutton, N. S., & Čėnas, N. (2008) · FEBS Journal · doi:10.1111/j.1742-4658.2008.06744.x · Cited by 26
Methyl-Coenzyme M Reductase from Methanothermobacter marburgensis
Duin, E. C., Prakash, D., & Brungess, C. (2011) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/b978-0-12-385112-3.00009-3 · Cited by 21
Inhibition of Methyl-CoM Reductase fromMethanobrevibacter ruminantiumby 2-Bromoethanesulfonate
Gräwert, T., Hohmann, H., Kindermann, M., Duval, S. M., Bacher, A., & Fischer, M. J. (2014) · Journal of Agricultural and Food Chemistry · doi:10.1021/jf505056g · Cited by 20
Inhalation Toxicity of 1,3-Propanediol in the Rat
Scott, R. S., Frame, S. R., ROSS, P. E., Loveless, S. E., & Kennedy, G. L. (2005) · Inhalation Toxicology · doi:10.1080/08958370590964485 · Cited by 19
Hinderberger, D., Ebner, S., Mayr, S., Jaun, B., Reiher, M., Goenrich, M., Thauer, R. K., & Harmer, J. R. (2008) · JBIC Journal of Biological Inorganic Chemistry · doi:10.1007/s00775-008-0417-0 · Cited by 13
Metabolism and Pathways for Denitration of Organic Nitrates in the Human Liver
Govoni, M., Tocchetti, P., & Lundberg, J. O. (2013) · Journal of Pharmacology and Experimental Therapeutics · doi:10.1124/jpet.113.203356 · Cited by 11
Cited by
Sorted by citations
Beauchemin, K. A., Ungerfeld, E. M., Eckard, R. J., & Wang, M. (2020) · Animal · doi:10.1017/s1751731119003100 · Cited by 619
Huws, S. A., Creevey, C. J., Oyama, L. B., Mizrahi, I., Denman, S. E., Popova, M., Muñoz-Tamayo, R., Forano, E., Waters, S. M., Hess, M., et al. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02161 · Cited by 487
Rumen methanogens and mitigation of methane emission by anti-methanogenic compounds and substances
Patra, A. K., Park, T., Kim, M., & Yu, Z. (2017) · Journal of Animal Science and Biotechnology/Journal of animal science and biotechnology · doi:10.1186/s40104-017-0145-9 · Cited by 513
Metabolic Hydrogen Flows in Rumen Fermentation: Principles and Possibilities of Interventions
Ungerfeld, E. M. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.00589 · Cited by 472
Roque, B. M., Venegas, M., Kinley, R. D., de Nys, R., Duarte, T. L., Yang, X., & Kebreab, E. (2021) · PLOS ONE · doi:10.1371/journal.pone.0247820 · Cited by 433
Metadata
- Authors
- Duin, E. C., Wagner, T., Shima, S., Prakash, D., Cronin, B., Yáñez-Ruiz, D. R., Duval, S., Rümbeli, R., Stemmler, R. T., Thauer, R. K., & Kindermann, M.
- Affiliations
- Auburn University (US)
- Max Planck Institute for Terrestrial Microbiology (DE)
- Estación Experimental del Zaidín, Consejo Superior de Investigaciones Cientificas, 18008 Granada, Spain;
- Research Centre for Animal Nutrition and Health, DSM Nutritional Products France, 68305 Saint Louis, France;
- Research and Development, DSM Nutritional Products, 4002 Basel, Switzerland
- ORCID
- Venue
- Proceedings of the National Academy of Sciences
- Publisher
- National Academy of Sciences
- Published
- 2016-05-02
- Volume
- 113
- Issue
- 22
- Pages
- 6172-6177
- ISSN
- 0027-8424 (ISSN-L)
- 1091-6490
- PMC
- PMC4896709
- OpenAlex
- W2345657234
- Cited by
- 339
- References
- 66
- Citations by year
- 2026: 44 · 2025: 59 · 2024: 56 · 2023: 40 · 2022: 40 · 2021: 30 · 2020: 18 · 2019: 25 · 2018: 14 · 2017: 8 · 2016: 5
- FWCI
- 35.48
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Proceedings of the National Academy of Sciences (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- DORA PSI (Paul Scherrer Institute) (submittedVersion)
- DIGITAL.CSIC (Spanish National Research Council (CSIC)) (submittedVersion)
- Max Planck Institute for Plasma Physics (submittedVersion)
- MPG.PuRe (Max Planck Society) (submittedVersion)
- Funders
- Max-Planck-Gesellschaft (no number)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Ruminant Nutrition and Digestive Physiology
- Physical Sciences › Energy › Renewable Energy, Sustainability and the Environment › Anaerobic Digestion and Biogas Production
- Physical Sciences › Environmental Science › Ecology › Agriculture Sustainability and Environmental Impact
- Keywords
- 3-nitrooxypropanol, enteric methane, ruminants, methyl-coenzyme M reductase, rumen fermentation, methanogenesis inhibition, nickel enzymes, nitrate reduction, nitrite, methanogenic archaea, feed additives, greenhouse gas emissions reduction
- MeSH terms
- Animals, Methane, Oxidoreductases, Rumen, Ruminants, Euryarchaeota, Molecular Docking Simulation
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review