The DOI matches its Crossref record; 34 of the 34 references it cites were found in a registry or an index.
Asparaginyl Hydroxylation of the Notch Ankyrin Repeat Domain by Factor Inhibiting Hypoxia-inducible Factor
Open accessAbstract
The stability and activity of hypoxia-inducible factor (HIF) are regulated by the post-translational hydroxylation of specific prolyl and asparaginyl residues. We show that the HIF asparaginyl hydroxylase, factor inhibiting HIF (FIH), also catalyzes hydroxylation of highly conserved asparaginyl residues within ankyrin repeat (AR) domains (ARDs) of endogenous Notch receptors. AR hydroxylation decreases the extent of ARD binding to FIH while not affecting signaling through the canonical Notch pathway. ARD proteins were found to efficiently compete with HIF for FIH-dependent hydroxylation. Crystallographic analyses of the hydroxylated Notch ARD (2.35A) and of Notch peptides bound to FIH (2.4-2.6A) reveal the stereochemistry of hydroxylation on the AR and imply that significant conformational changes are required in the ARD fold in order to enable hydroxylation at the FIH active site. We propose that ARD proteins function as natural inhibitors of FIH and that the hydroxylation status of these proteins provides another oxygen-dependent interface that modulates HIF signaling.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“It also seems that increased NF-κB activity in hypoxia can be regulated by HIF-144, thus a cross-regulatory loop may exist between these two pathways and may involve other transcriptional regulators that bear non-redundant PHD sensitivity, including activating transcription factor-4 and Notch52,53”
From Hypoxia: an alarm signal during intestinal inflammation (2010) · cites this paper as [52]
Citations
Cites
Notch Signaling: Cell Fate Control and Signal Integration in Development
Artavanis-Tsakonas, S., Rand, M. D., & Lake, R. J. (1999) · Science · doi:10.1126/science.284.5415.770 · Cited by 5,909
SMART, a simple modular architecture research tool: Identification of signaling domains
Schultz, J., Milpetz, F., Peer Bork, B., & Ponting, C. P. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.11.5857 · Cited by 3,577
Notch signalling: a simple pathway becomes complex
Bray, S. J. (2006) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2009 · Cited by 2,620
Oxygen sensing by HIF hydroxylases
Schofield, C. J., & Ratcliffe, P. J. (2004) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1366 · Cited by 2,068
Self-citationHypoxia requires Notch signaling to maintain the undifferentiated cell state
Gustafsson, M. V., Zheng, X., Pereira, T., Gradin, K., Jin, S., Lundkvist, J., Ruas, J. L., Poellinger, L., Lendahl, U., & Bondesson, M. (2005) · Developmental Cell · doi:10.1016/j.devcel.2005.09.010 · Cited by 1,109
The ankyrin repeat as molecular architecture for protein recognition
Mosavi, L. K., Cammett, T. J., Desrosiers, D. C., & Peng, Z. (2004) · Protein Science · doi:10.1110/ps.03554604 · Cited by 933
Hewitson, K. S., McNeill, L. A., Riordan, M. V., Tian, Y.-M., Bullock, A. N., Welford, R. W., Elkins, J. M., Oldham, N. J., Bhattacharya, S., Gleadle, J. M., et al. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.c200273200 · Cited by 719
Self-citationActivation of Hypoxia-inducible Factor-1; Definition of Regulatory Domains within the α Subunit
Pugh, C. W., O'Rourke, J. F., Nagao, M., Gleadle, J., & Ratcliffe, P. J. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.17.11205 · Cited by 526
Self-citationPosttranslational Modification of Proteins: Expanding Nature's Inventory
Walsh, C. T. (2005) · Cited by 484
Proline hydroxylation and gene expression
Kaelin, W. G. (2005) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.74.082803.133142 · Cited by 468
Flagged first, then by citations
Cited by
Sorted by citations
Items 201–223 of 223
FROM EMBRYONIC STEM CELLS TO ARTERIES AND VEINS
Lanner, F. (2008)
Vascular development : From embryonic stem cells to arteries and veins
Lanner, F. (2008) · Figshare
Cross-species identification of hydroxylation sites for ARD and FIH interaction
Lo, Y.-T., Shih, T., Lin, H. ‐., Pai, T., & Chang, M. D. (2011) · IEEE International Conference on Systems Biology · doi:10.1109/isb.2011.6033176
Review The updated biology of hypoxia-inducible factor
Greer, S. N., Metcalf, J. L., Wang, Y., & Ohh, M. (2016)
hypoxia: an alarm signal during intestinal
Taylor, C. T. (2010)
Coulon, C., Γεωργιάδου, Μ., Roncal, C., Bock, K. D., Langenberg, T., & Carmeliet, P. (2016)
Humoral classification of diseases in Siddha system of medicine.
Anandan, T., & Veluchamy, G. (1995) · PubMed
Oxygen Signaling in Physiological and Pathological Angiogenesis
Henze, A., & Mazzone, M. (2015) · Springer eBooks · doi:10.1007/978-1-4939-2907-8_14
Montalto, G., Carroccio, A., Soresi, M., Marco, C. D., Averna, M. R., & Notarbartolo, A. (1991) · PubMed
The Biological Role of Factor-Inhibiting Hypoxia- Inducible Factor
Khan, M. N. (2008) · Spiral (Imperial College London) · doi:10.25560/4645
The Role and Regulation of Factor Inhibiting HIF (FIH) in Normal and Pathological Human Placentae
Racano, A. (2010) · TSpace (University of Toronto)
Mammalian O2 Sensing and Signalling
Chaplin, V. D., Barlow, A. N., & Knapp, M. J. (2017) · Royal Society of Chemistry eBooks · doi:10.1039/9781788012836-00219
Membranprotein-Komposition von Kardiofibroblasten in Normoxie und Hypoxie
Böttger, J. (2019) · eDiss (Georg-August-Universität Göttingen) · doi:10.53846/goediss-7661
The manipulation of host transcription by the ANKH effector of legionella.
Dwingelo, J. E. V. (2019) · doi:10.18297/etd/3310
Prevention of apoptosis by the interaction between FIH1 and Bax
YanMen, B., & Chen, K.-H. (2011)
Chandrakumar, A. A. (2020) · TSpace (University of Toronto)
Weiss, M. J. (2020) · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature · doi:10.3410/f.732587239.793577754
A protein hydroxylase couples epithelial membrane biology to nucleolar ribosome biogenesisPreprint
Hendrix, E., Andrijes, R., Boora, U., Kaur, A., Bundred, J., Officer-Jones, L., Pennie, R. L., Powley, I. R., Zayer, A., Heilig, R., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.03.15.532818
Self-citationCellular and functional insights into FIH-mediated hydroxylation of TRPA1
Guo, T., Lopez, D. M., Wang, S., Yao, L., Li, X., Davies, E. R., Vargas‐Caballero, M., Divecha, N., Schofield, C. J., Deinhardt, K., et al. (2025) · Journal of Biological Chemistry · doi:10.1016/j.jbc.2025.110882
Self-citationProbing the druggability of the Notch1 ankyrin domain using a fragment-based approach
Abdel‐Rahman, N. (2011) · Apollo (University of Cambridge) · doi:10.17863/cam.16524
The Dual Role of HIF Hydroxylase PHD3 in Cancer Cell Survival
Rantanen, K. (2012) · UTUPub (University of Turku)
Metadata
- Authors
- Coleman, M. L., McDonough, M. A., Hewitson, K. S., Coles, C., Mecinovicí, J., Edelmann, M., Cook, K. M., Cockman, M. E., Lancaster, D. E., Kessler, B. M., Oldham, N. J., Ratcliffe, P. J., & Schofield, C. J.
- Affiliations
- University of Oxford (GB)
- Corresponding author
- Schofield, Christopher J.
- ORCID
- Venue
- Journal of Biological Chemistry
- Publisher
- Elsevier BV
- Published
- 2007-08
- Volume
- 282
- Issue
- 33
- Pages
- 24027-24038
- ISSN
- 0021-9258 (ISSN-L)
- OpenAlex
- W2078263362
- Cited by
- 222
- References
- 34
- Citations by year
- 2026: 1 · 2025: 7 · 2024: 4 · 2023: 7 · 2022: 9 · 2021: 5 · 2020: 8 · 2019: 10 · 2018: 7 · 2017: 8 · 2016: 10 · 2015: 13 · 2014: 14 · 2013: 19 · 2012: 11
- FWCI
- 8.31
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Journal of Biological Chemistry (publishedVersion, cc-by)
- PubMed (publishedVersion)
- University of Birmingham Research Portal (University of Birmingham) (submittedVersion)
- Funders
- Wellcome Trust
- Biotechnology and Biological Sciences Research Council (BBS/B/07683)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Cancer, Hypoxia, and Metabolism
- Physical Sciences › Chemistry › Inorganic Chemistry › Metal-Catalyzed Oxygenation Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Keywords
- FIH, Notch receptor, ankyrin repeat domain, hypoxia-inducible factor, protein stability, oxygen sensing, protein-protein interaction, conformational change, crystal structure, Notch signaling
- MeSH terms
- Receptor, Notch3, Asparagine, Humans, Mixed Function Oxygenases, Hydroxylation, Repressor Proteins, Transcription Factors, Ankyrin Repeat, Protein Structure, Tertiary, Crystallography, X-Ray, Hypoxia-Inducible Factor 1, alpha Subunit, Receptors, Notch, Receptor, Notch1, Receptor, Notch2
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review