Quantitative proteomic comparison of mouse peroxisomes from liver and kidney
Abstract
The peroxisome plays a central role in the catabolic and anabolic pathways that contribute to the lipid homeostasis. Besides this main function, this organelle has gained functional diversity. Although several approaches have been used for peroxisomal proteome analysis, a quantitative protein expression analysis of peroxisomes from different tissues has not been elucidated yet. Here, we applied a 2-DE-based method on mouse liver and kidney peroxisomal enriched fractions to study the tissue-dependent protein expression. Ninety-one spots were identified from the 2-DE maps from pH 3.0-10.0 and 51 spots from the basic range corresponding to 31 peroxisomal proteins, 10 putative peroxisomal, 6 cytosolic, 17 mitochondrial and 1 protein from endoplasmic reticulum. Based on the identification and on the equivalent quality of both tissue preparations, the differences emerging from the comparison could be quantified. In liver, proteins involved in pathways such as alpha- and beta-oxidation, isoprenoid biosynthesis, amino acid metabolism and purine and pyrimidine metabolism were more abundant whereas in kidney, proteins from the straight-chain fatty acid beta-oxidation were highly expressed. These results indicate that tissue-specific functional classes of peroxisomal proteins could be relevant to study peroxisomal cellular responses or pathologies. Finally, a web-based peroxisomal proteomic database was built.
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Symptoms of patients with peroxisomal single enzyme and transporter deficiencies have broad heterogeneity related to differences in the physiological role of the affected metabolic pathway or reaction.
“The symptoms of patients with peroxisomal single enzyme and transporter deficiencies have a broad heterogeneity, related to differences in the physiological role of the affected metabolic pathway or reaction [5].”
From Peroxisomes in brain development and function (2016) · cites this paper as [5]
Cites
Bradford, M. M. (1976) · Analytical Biochemistry · doi:10.1016/0003-2697(76)90527-3 · Cited by 255,302 · see citing works
Measurement of protein using bicinchoninic acid
Smith, P. K., Krohn, R. I., Hermanson, G. T., Mallia, A. K., Gartner, F. H., Provenzano, M. D., Fujimoto, E. K., Goeke, N. M., Olson, B. J., & Klenk, D. C. (1985) · Analytical Biochemistry · doi:10.1016/0003-2697(85)90442-7 · Cited by 18,482 · see citing works
Ranade, V. (2009) · American Journal of Therapeutics · doi:10.1097/mjt.0b013e31817c941f · Cited by 2,790 · see citing works
NEUHOFF, V., Arold, N., Taube, D., & Ehrhardt, W. (1988) · Electrophoresis · doi:10.1002/elps.1150090603 · Cited by 2,676 · see citing works
Görg, A., Postel, W., & Günther, S. (1988) · Electrophoresis · doi:10.1002/elps.1150090913 · Cited by 2,401 · see citing works
Peroxisomes (microbodies and related particles).
De Duve, C., & Baudhuin, P. (1966) · Physiological Reviews · doi:10.1152/physrev.1966.46.2.323 · Cited by 1,666 · see citing works
A knowledge base for predicting protein localization sites in eukaryotic cells
Nakai, K., & Kanehisa, M. I. (1992) · Genomics · doi:10.1016/s0888-7543(05)80111-9 · Cited by 1,512 · see citing works
Clauser, K. R., Baker, P. R., & Burlingame, A. L. (1999) · Analytical Chemistry · doi:10.1021/ac9810516 · Cited by 1,084 · see citing works
Kristiansen, T. Z., Navarro, J. D., Amanchy, R., Kristiansen, T. Z., Jonnalagadda, C. K., Surendranath, V., Niranjan, V., Muthusamy, B., Gandhi, T. K. B., Gronborg, M., et al. (2003) · Genome Research · doi:10.1101/gr.1680803 · Cited by 1,078 · see citing works
The proteome of Saccharomyces cerevisiae mitochondria
Sickmann, A., Reinders, J., Wagner, Y., Joppich, C., Zahedi, R. P., Meyer, H. E., Schönfisch, B., Perschil, I., Chacińska, A., Guiard, B., et al. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2135385100 · Cited by 895 · see citing works
Mootha, V. K., Bunkenborg, J., Olsen, J. V., Hjerrild, M., Wisniewski, J. R., Stahl, E., Bolouri, M. S., Ray, H. N., Sihag, S., Kamal, M., et al. (2003) · Cell · doi:10.1016/s0092-8674(03)00926-7 · Cited by 889 · see citing works
Batist, G., Tulpule, A., Sinha, B. K., Katki, A. G., Myers, C. E., & Cowan, K. H. (1986) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)66748-1 · Cited by 790 · see citing works
Pfam: multiple sequence alignments and HMM-profiles of protein domains
Sonnhammer, E. L. L. (1998) · Nucleic Acids Research · doi:10.1093/nar/26.1.320 · Cited by 774 · see citing works
Characterization of the human heart mitochondrial proteome
Taylor, S. W., Fahy, E., Zhang, B., Glenn, G. M., Warnock, D. E., Wiley, S. E., Murphy, A. N., Gaucher, S. P., Capaldi, R., Gibson, B. W., et al. (2003) · Nature Biotechnology · doi:10.1038/nbt793 · Cited by 702 · see citing works
The dynamic range of protein expression: A challenge for proteomic research
Corthals, G. L., Wasinger, V. C., Hochstrasser, D. F., & Sanchez, J. (2000) · Electrophoresis · doi:10.1002/(sici)1522-2683(20000401)21:6 · Cited by 615 · see citing works
Proteomics of the Chloroplast Envelope Membranes from Arabidopsis thaliana
Ferro, M., Salvi, D., Brugière, S., Miras, S., Kowalski, S., Louwagie, M., Garin, J., Joyard, J., & Rolland, N. (2003) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m300030-mcp200 · Cited by 445 · see citing works
Peltier, J., Friso, G., Kalume, D. E., Roepstorff, P., Nilsson, F., Adamska, I., & van Wijka, K. J. (2000) · The Plant Cell · doi:10.1105/tpc.12.3.319 · Cited by 356 · see citing works
Quantitative Proteomic Comparison of Rat Mitochondria from Muscle, Heart, and Liver *S
Forner, F., Foster, L., Campanaro, S., Valle, G., & Mann, M. (2006) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m500298-mcp200 · Cited by 289 · see citing works
Proteomic Analysis of Rat Liver Peroxisome
Kikuchi, M., Hatano, N., Yokota, S., Shimozawa, N., Imanaka, T., & Taniguchi, H. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m305623200 · Cited by 258 · see citing works
Purification and properties of sterol carrier protein2.
Noland, B. J., Arebalo, R. E., Hansbury, E., & Scallen, T. J. (1980) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)85664-8 · Cited by 238 · see citing works
AraPerox. A Database of Putative Arabidopsis Proteins from Plant Peroxisomes
Reumann, S., Ma, C., Lemke, S., & Babujee, L. (2004) · PLANT PHYSIOLOGY · doi:10.1104/pp.104.043695 · Cited by 229 · see citing works
Integrative Analysis of the Mitochondrial Proteome in Yeast
Prokisch, H., Scharfe, C., Camp, D., Xiao, W., David, L., Andréoli, C., Monroe, M. E., Moore, R., Gritsenko, M. A., Kozany, C., et al. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0020160 · Cited by 219 · see citing works
Prediction of Peroxisomal Targeting Signal 1 Containing Proteins from Amino Acid Sequence
Neuberger, G., Maurer‐Stroh, S., Eisenhaber, B., Hartig, A., & Eisenhaber, F. (2003) · Journal of Molecular Biology · doi:10.1016/s0022-2836(03)00319-x · Cited by 213 · see citing works
Morel, F., Rauch, C., Petit, E., Piton, A., Théret, N., Coles, B., & Guillouzo, A. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m313357200 · Cited by 179 · see citing works
Identification of Proteomic Signatures of Exposure to Marine Pollutants in Mussels (Mytilus edulis)
Apraiz, I., Mi, J., & Cristóbal, S. (2006) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m500333-mcp200 · Cited by 177 · see citing works
Self-citationMetabolic and molecular basis of peroxisomal disorders: A review
Wanders, R. J. A. (2004) · American Journal of Medical Genetics Part A · doi:10.1002/ajmg.a.20661 · Cited by 170 · see citing works
Proteomic Analysis of Leaf Peroxisomal Proteins in Greening Cotyledons of Arabidopsis thaliana
Fukao, Y., Hayashi, M., & Nishimura, M. (2002) · Plant and Cell Physiology · doi:10.1093/pcp/pcf101 · Cited by 159 · see citing works
Central role of peroxisomes in isoprenoid biosynthesis
Kovacs, W. J., Olivier, L. M., & Krisans, S. K. (2002) · Progress in Lipid Research · doi:10.1016/s0163-7827(02)00002-4 · Cited by 156 · see citing works
In silico prediction of the glycosomal enzymes of Leishmania major and trypanosomes
Opperdoes, F. R., & Szikora, J. (2006) · Molecular and Biochemical Parasitology · doi:10.1016/j.molbiopara.2006.02.010 · Cited by 153 · see citing works
Marelli, M., Smith, J. J., Jung, S., Yi, E. C., Nesvizhskii, A. I., Christmas, R. H., Saleem, R. A., Tam, Y. Y. C., Fagarasanu, A. D., Goodlett, D. R., et al. (2004) · The Journal of Cell Biology · doi:10.1083/jcb.200404119 · Cited by 153 · see citing works
Malonyl-CoA and the regulation of fatty acid oxidation in soleus muscle
ALAM, N., & SAGGERSON, E. D. (1998) · Biochemical Journal · doi:10.1042/bj3340233 · Cited by 141 · see citing works
Appel, R. D., Bairoch, A., Sanchez, J., Vargas, J. R., Golaz, O., Pasquali, C., & Hochstrasser, D. F. (1996) · Electrophoresis · doi:10.1002/elps.1150170324 · Cited by 139 · see citing works
Ma, C., Haslbeck, M., Babujee, L., Jahn, O., & Reumann, S. (2006) · PLANT PHYSIOLOGY · doi:10.1104/pp.105.073841 · Cited by 137 · see citing works
Isolation and characterization of peroxisomes from the liver of normal untreated rats
Völkl, A., & Fahimi, H. D. (1985) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1985.tb08920.x · Cited by 124 · see citing works
The stress proteome of Enterococcus faecalis
Giárd, J.-C., Laplace, J., Rincé, A., Pichereau, V., Benachour, A., Leboeuf, C., Flahaut, S., Auffray, Y., & Hartke, A. (2001) · Electrophoresis · doi:10.1002/1522-2683(200108)22:14 · Cited by 120 · see citing works
In Silico Prediction of the Peroxisomal Proteome in Fungi, Plants and Animals
Emanuelsson, O., Elofsson, A., von HEIJNE, G., & Cristóbal, S. (2003) · Journal of Molecular Biology · doi:10.1016/s0022-2836(03)00553-9 · Cited by 117 · see citing works
Biogenesis and function of peroxisomes and glycosomes
Parsons, M., Furuya, T., Pal, S., & Kessler, P. S. (2001) · Molecular and Biochemical Parasitology · doi:10.1016/s0166-6851(01)00261-4 · Cited by 99 · see citing works
Cloning, Purification, and Properties of a Novel NADH Pyrophosphatase
Frick, D. N., & Bessman, M. J. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.4.1529 · Cited by 96 · see citing works
A rapid method for the isolation of peroxisomes from rat liver
Ghosh, M. K., & Hajra, A. K. (1986) · Analytical Biochemistry · doi:10.1016/0003-2697(86)90323-4 · Cited by 93 · see citing works
Mohan, D., & Lee, C. S. (2002) · Electrophoresis · doi:10.1002/1522-2683(200209)23:18 · Cited by 88 · see citing works
Functions and Organization of Peroxisomal β‐Oxidation
Mannaerts, G. P., & Veldhoven, P. P. V. (1996) · Annals of the New York Academy of Sciences · doi:10.1111/j.1749-6632.1996.tb18611.x · Cited by 86 · see citing works
Ayté, J., Gil‐Gómez, G., Haro, D., Marrero, P. F., & Hegardt, F. G. (1990) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.87.10.3874 · Cited by 85 · see citing works
Ofman, R., Speijer, D., Leen, R., & Wanders, R. J. A. (2005) · Biochemical Journal · doi:10.1042/bj20050893 · Cited by 83 · see citing works
l -carnitine acyltransferase in intact peroxisomes is inhibited by malonyl-CoA
Derrick, J. P., & Ramsay, R. R. (1989) · Biochemical Journal · doi:10.1042/bj2620801 · Cited by 77 · see citing works
The Role of Peroxisomes in Cholesterol Metabolism
Krisans, S. K. (1992) · American Journal of Respiratory Cell and Molecular Biology · doi:10.1165/ajrcmb/7.4.358 · Cited by 76 · see citing works
Phytanic acid alpha-oxidation, new insights into an old problem: a review
Wanders, R. J. A., Jansen, G. A., & Lloyd, M. D. (2003) · Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids · doi:10.1016/s1388-1981(03)00003-9 · Cited by 75 · see citing works
Sterol carrier protein 2: A role in steroid hormone synthesis?
Pfeifer, S. M., Furth, E. E., Ohba, T., Chang, Y. J., Rennert, H., Sakuragi, N., Billheimer, J. T., & Strauss, J. F. (1993) · The Journal of Steroid Biochemistry and Molecular Biology · doi:10.1016/0960-0760(93)90071-4 · Cited by 75 · see citing works
Mammalian Peroxisomes: Metabolism of Oxygen and Reactive Oxygen Species
Singh, I. (1996) · Annals of the New York Academy of Sciences · doi:10.1111/j.1749-6632.1996.tb18648.x · Cited by 74 · see citing works
Olivier, L. (2000) · Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids · doi:10.1016/s1388-1981(00)00139-6 · Cited by 73 · see citing works
Scheler, C., Li, X., Salnikow, J., Dunn, M. J., & Jungblut, P. R. (1999) · Electrophoresis · doi:10.1002/(sici)1522-2683(19991201)20:18 · Cited by 72 · see citing works
Islinger, M., Lüers, G. H., Zischka, H., Ueffing, M., & Völkl, A. (2005) · PROTEOMICS · doi:10.1002/pmic.200401347 · Cited by 70 · see citing works
Olivier, L. M., Kovacs, W. J., Masuda, K. R., Keller, G.-A., & Krisans, S. K. (2000) · Journal of Lipid Research · doi:10.1016/s0022-2275(20)32353-1 · Cited by 65 · see citing works
Mi, J., Orbea, A., Syme, N. R., Ahmed, M., Cajaraville, M. P., & Cristóbal, S. (2005) · PROTEOMICS · doi:10.1002/pmic.200401243 · Cited by 60 · see citing works
Self-citationMevalonate kinase is a cytosolic enzyme in humans
Hogenboom, S., Tuyp, J. J. M., Espeel, M., Koster, J., Wanders, R. J. A., & Waterham, H. R. (2004) · Journal of Cell Science · doi:10.1242/jcs.00910 · Cited by 59 · see citing works
Mitchell, G. A., Robert, M. F., Hruz, P. W., Wang, S., Fontaine, G., Behnke, C. E., Mende‐Mueller, L., Schappert, K. T., Lee, C., & Gibson, K. M. (1993) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)53620-6 · Cited by 58 · see citing works
Abdelraheim, S. R., CARTWRIGHT, J. L., Gasmi, L., & McLennan, A. G. (2001) · Archives of Biochemistry and Biophysics · doi:10.1006/abbi.2000.2268 · Cited by 49 · see citing works
Phosphomevalonate kinase is a cytosolic protein in humans
Hogenboom, S., Tuyp, J. J. M., Espeel, M., Koster, J., Wanders, R. J. A., & Waterham, H. R. (2004) · Journal of Lipid Research · doi:10.1194/jlr.m300373-jlr200 · Cited by 47 · see citing works
Peroxisomal Disorders: Overview
Moser, H. W., & Moser, A. B. (1996) · Annals of the New York Academy of Sciences · doi:10.1111/j.1749-6632.1996.tb18634.x · Cited by 39 · see citing works
Ghys, K., Fransen, M., Mannaerts, G. P., & Veldhoven, P. P. V. (2002) · Biochemical Journal · doi:10.1042/bj20011432 · Cited by 37 · see citing works
Xu, W., Dunn, C., & Bessman, M. J. (2000) · Biochemical and Biophysical Research Communications · doi:10.1006/bbrc.2000.2999 · Cited by 37 · see citing works
Mostaguir, K., Hoogland, C., Binz, P., & Appel, R. D. (2003) · PROTEOMICS · doi:10.1002/pmic.200300483 · Cited by 36 · see citing works
Gorgas, K., & Krisans, S. K. (1989) · Journal of Lipid Research · doi:10.1016/s0022-2275(20)38198-0 · Cited by 32 · see citing works
Human mevalonate pyrophosphate decarboxylase is localized in the cytosol
Hogenboom, S., Tuyp, J. J. M., Espeel, M., Koster, J., Wanders, R. J. A., & Waterham, H. R. (2004) · Molecular Genetics and Metabolism · doi:10.1016/j.ymgme.2003.12.001 · Cited by 31 · see citing works
ASHMARINA, L. I., Robert, M., Elsliger, M., & Mitchell, G. A. (1996) · Biochemical Journal · doi:10.1042/bj3150071 · Cited by 25 · see citing works
Immunohistochemical Localization of Peroxisomal Enzymes in Developing Rat Kidney Tissues
Johkura, K., Usuda, N., Liang, Y., & Nakazawa, A. (1998) · Journal of Histochemistry & Cytochemistry · doi:10.1177/002215549804601008 · Cited by 18 · see citing works
Tuinstra, R. L., Burgner, J. W., & Miziorko, H. M. (2002) · Archives of Biochemistry and Biophysics · doi:10.1016/s0003-9861(02)00584-2 · Cited by 13 · see citing works
Peroxisomal Purine Metabolisma,d
Yeldandi, A. V., Chu, R., Pan, J., ZHU, Y., & Usuda, N. (1996) · Annals of the New York Academy of Sciences · doi:10.1111/j.1749-6632.1996.tb18615.x · Cited by 12 · see citing works
Graham, J. M., & Higgins, J. A. (1993) · Humana Press eBooks · doi:10.1385/0896032507 · Cited by 5 · see citing works
Verhoeven‐Duif, N. M., Schor, D. S. M., Struys, E. A., Jansen, E. E. W., ten Brink, H. J., Wanders, R. J. A., & Jakobs, C. (1999) · Journal of Lipid Research · doi:10.1016/s0022-2275(20)33365-4 · Cited by 4 · see citing works
Flagged first, then by citations
1 of the 70 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Biochemistry and genetics of inherited disorders of peroxisomal fatty acid metabolism
Veldhoven, P. P. V. (2010) · Journal of Lipid Research · doi:10.1194/jlr.r005959 · Cited by 328 · see citing works
Sapir‐Mir, M., Mett, A., Belausov, E., Tal-Meshulam, S., Frydman, A., Gidoni, D., & Eyal, Y. (2008) · PLANT PHYSIOLOGY · doi:10.1104/pp.108.127951 · Cited by 206 · see citing works
Peroxisomes in brain development and function
Berger, J., Dorninger, F., Forss-Petter, S., & Kunze, M. (2016) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2015.12.005 · Cited by 194 · see citing works
“The symptoms of patients with peroxisomal single enzyme and transporter deficiencies have a broad heterogeneity, related to differences in the physiological role of the affected metabolic pathway or reaction [5].”
BackgroundThe peroxisome: still a mysterious organelle
Schrader, M., & Fahimi, H. D. (2008) · Histochemistry and Cell Biology · doi:10.1007/s00418-008-0396-9 · Cited by 192 · see citing works
Peroxisome diversity and evolution
Gabaldón, T. (2010) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2009.0240 · Cited by 183 · see citing works
Transfer of metabolites across the peroxisomal membrane.
Antonenkov, V. D., & Hiltunen, J. (2012) · Biochimica et Biophysica Acta · doi:10.1016/j.bbadis.2011.12.011 · Cited by 152 · see citing works
Be different—The diversity of peroxisomes in the animal kingdom
Islinger, M., Cardoso, M. J., & Schrader, M. (2010) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2010.03.013 · Cited by 115 · see citing works
Plasmalogens participate in very-long-chain fatty acid-induced pathology
Brites, P., Mooyer, P. A. W., el Mrabet, L., Waterham, H. R., & Wanders, R. J. A. (2008) · Brain · doi:10.1093/brain/awn295 · Cited by 112 · see citing works
Mammalian SOD2 is exclusively located in mitochondria and not present in peroxisomes
Karnati, S., Lüers, G. H., Pfreimer, S., & Baumgart‐Vogt, E. (2013) · Histochemistry and Cell Biology · doi:10.1007/s00418-013-1099-4 · Cited by 91 · see citing works
Hepatic dysfunction in peroxisomal disorders
Baes, M. I., & Veldhoven, P. P. V. (2015) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2015.09.035 · Cited by 62 · see citing works
Pex35 is a regulator of peroxisome abundance
Yofe, I., Soliman, K., Chuartzman, S. G., Morgan, B., Weill, U., Yifrach, E., Dick, T. P., Cooper, S. J., Ejsing, C. S., Schuldiner, M., et al. (2017) · Journal of Cell Science · doi:10.1242/jcs.187914 · Cited by 41 · see citing works
Proteome analysis of peroxisomes from dark‐treated senescent Arabidopsis leaves
Pan, R., Reumann, S., Lisik, P., Tietz, S., Olsen, L. J., & Hu, J. (2018) · Journal of Integrative Plant Biology · doi:10.1111/jipb.12670 · Cited by 37 · see citing works
Defining the Mammalian Peroxisomal Proteome
Yifrach, E., Fischer, S., Oeljeklaus, S., Schuldiner, M., Zalckvar, E., & Warscheid, B. (2018) · Sub-cellular biochemistry/Subcellular biochemistry · doi:10.1007/978-981-13-2233-4_2 · Cited by 36 · see citing works
Versatility of peroxisomes: An evolving concept
Deb, R., & Nagotu, S. (2017) · Tissue and Cell · doi:10.1016/j.tice.2017.03.002 · Cited by 33 · see citing works
Liu, Y., Chen, W., Li, C., Li, L., Yang, M., Jiang, N., Luo, S., Xi, Y., Liu, C., Han, Y., et al. (2023) · Redox Biology · doi:10.1016/j.redox.2023.102855 · Cited by 28 · see citing works
Pinto, M. P., Grou, C. P. O., Fransen, M., Sá-Miranda, C., & Azevedo, J. E. (2009) · Biochimica et Biophysica Acta (BBA) - Molecular Cell Research · doi:10.1016/j.bbamcr.2009.08.007 · Cited by 27 · see citing works
Proteomic study on gender differences in aging kidney of mice
Amelina, H., & Cristóbal, S. (2009) · Proteome Science · doi:10.1186/1477-5956-7-16 · Cited by 25 · see citing works
In vitro methylation by methanol: Proteomic screening and prevalence investigation
Chen, G., Liu, H., Wang, X., & Li, Z. (2009) · Analytica Chimica Acta · doi:10.1016/j.aca.2009.12.012 · Cited by 24 · see citing works
Pan, R., & Hu, J. (2018) · Sub-cellular biochemistry/Subcellular biochemistry · doi:10.1007/978-981-13-2233-4_1 · Cited by 24 · see citing works
The Impact of a Ketogenic Diet and Liver Dysfunction on Serum Very Long‐Chain Fatty Acids Levels
Stradomska, T. J., Bachański, M., Pawłowska, J., Syczewska, M., Stolarczyk, A., & Tylki‐Szymańska, A. (2013) · Lipids · doi:10.1007/s11745-013-3761-y · Cited by 20 · see citing works
Renal tubular peroxisomes are dispensable for normal kidney function
Ansermet, C., Centeno, G., Pradervand, S., Harmáček, D., Garcia, A., Daraspe, J., Kocherlakota, S., Baes, M. I., Bignon, Y., & Firsov, D. (2022) · JCI Insight · doi:10.1172/jci.insight.155836 · Cited by 19 · see citing works
Age-related subproteomic analysis of mouse liver and kidney peroxisomes
Mi, J., García‐Arcos, I., Álvarez-Asencio, R., & Cristóbal, S. (2007) · Proteome Science · doi:10.1186/1477-5956-5-19 · Cited by 17 · see citing works
Self-citationTransmembrane protein 135 regulates lipid homeostasis through its role in peroxisomal DHA metabolism
Landowski, M., Bhute, V. J., Grindel, S. H., Haugstad, Z., Gyening, Y. K., Tytanic, M., Brush, R. S., Moyer, L. J., Nelson, D. W., Davis, C. R., et al. (2023) · Communications Biology · doi:10.1038/s42003-022-04404-7 · Cited by 15 · see citing works
An update on the mouse liver proteome
Gazzana, G., & Borlak, J. T. (2009) · Proteome Science · doi:10.1186/1477-5956-7-35 · Cited by 15 · see citing works
Small G proteins in peroxisome biogenesis: the potential involvement of ADP-ribosylation factor 6
Anthonio, E. A., Brees, C., Baumgart‐Vogt, E., Hongu, T., Huybrechts, S. J., Dijck, P. V., Mannaerts, G. P., Kanaho, Y., Veldhoven, P. P. V., & Fransen, M. (2009) · BMC Cell Biology · doi:10.1186/1471-2121-10-58 · Cited by 15 · see citing works
Khalil, Y., Carrino, S., Lin, F. F., Ferlin, A., Lad, H. V., Mazzacuva, F., Falcone, S., Rivers, N., Banks, G. T., Concas, D., et al. (2022) · International Journal of Molecular Sciences · doi:10.3390/ijms23020987 · Cited by 14 · see citing works
Quantitative proteomics to study aging in rabbit liver
Amin, B., Ford, K. I., & Robinson, R. A. S. (2020) · Mechanisms of Ageing and Development · doi:10.1016/j.mad.2020.111227 · Cited by 14 · see citing works
Nicolas-Francès, V., Arnauld, S., Kaminski, J., van Themaat, E. V. L., Clémencet, M.-C., Chamouton, J., Athias, A., Grober, J., Gresti, J., Degrace, P., et al. (2013) · Biochimie · doi:10.1016/j.biochi.2013.11.014 · Cited by 13 · see citing works
Predicting Peroxisomal Targeting Signals to Elucidate the Peroxisomal Proteome of Mammals
Kunze, M. (2018) · Sub-cellular biochemistry/Subcellular biochemistry · doi:10.1007/978-981-13-2233-4_7 · Cited by 12 · see citing works
Peroxisomal ATP Uptake Is Provided by Two Adenine Nucleotide Transporters and the ABCD Transporters
van Roermund, C. W. T., IJlst, L., Linka, N., Wanders, R. J. A., & Waterham, H. R. (2022) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2021.788921 · Cited by 12 · see citing works
Amelina, H., Sjödin, M. O. D., Bergquist, J., & Cristóbal, S. (2011) · Journal of Chromatography B · doi:10.1016/j.jchromb.2011.08.044 · Cited by 12 · see citing works
Scaloni, A., Codarin, E., Maso, V. D., Arena, S., Renzone, G., Tiribelli, C., Quadrifoglio, F., & Tell, G. (2009) · PROTEOMICS - CLINICAL APPLICATIONS · doi:10.1002/prca.200800169 · Cited by 10 · see citing works
Techritz, S., Lützkendorf, S., Bazant, E., Becker, S., Klose, J., & Schuelke, M. (2012) · PROTEOMICS · doi:10.1002/pmic.201100539 · Cited by 8 · see citing works
Singin, Ö., Astapenka, A., Costina, V., Kühl, S., Bonekamp, N. A., Drews, O., & Islinger, M. (2024) · Cells · doi:10.3390/cells13020176 · Cited by 6 · see citing works
Landowski, M., Gogoi, P., Ikeda, S., & Ikeda, A. (2024) · Frontiers in Ophthalmology · doi:10.3389/fopht.2024.1355379 · Cited by 6 · see citing works
Wang, Y., Hong, K., Wei, J., Zhou, Q., Jiao, T., Xu, S., & Yu, L. (2025) · Aquaculture Reports · doi:10.1016/j.aqrep.2025.103100 · Cited by 5 · see citing works
Selective Autophagy in Kidney Diseases: The Tip of the Iceberg
Zhang, Q., Zhang, X., Su, H.-Y., An, N., Gong, S., Chen, X., Khazaeli, M., Liu, H., & Yang, C. (2025) · Integrative Medicine in Nephrology and Andrology · doi:10.1097/imna-d-24-00036 · Cited by 4 · see citing works
The Proteomics Toolbox Applied to Peroxisomes
Oeljeklaus, S., Schummer, A., & Warscheid, B. (2014) · Springer eBooks · doi:10.1007/978-3-7091-1788-0_12 · Cited by 2 · see citing works
Eberhart, T., Charles, K. N., Salumbides-Torres, B., Price, N., Fliesler, S. J., Faust, P. L., & Kovacs, W. J. (2026) · Frontiers in Molecular Neuroscience · doi:10.3389/fnmol.2026.1636268 · Cited by 1 · see citing works
PPARα Activation Induces Nε‐Lys‐Acetylation of Rat Liver Peroxisomal Multifunctional Enzyme Type 1
Contreras, M. A., Álzate, Ó., Singh, A. K., & Singh, I. (2013) · Lipids · doi:10.1007/s11745-013-3843-x · Cited by 1 · see citing works
Proteomics of Renal Peroxisomes
Gronemeyer, T., Wiese, S., Stephan, C., Ofman, R., Wanders, R. J. A., Meyer, H. E., & Warscheid, B. (2009) · doi:10.1002/9783527628612.ch7
Beretta, L. (2009) · Wiley eBooks · doi:10.1002/9780470747919.ch58
The mouse as a model to understand peroxisomal disorders
Brites, P. (2009) · Data Archiving and Networked Services (DANS)
Schrader, M., (21832286), M. I., & (11103897), J. C. (2022) · Frontiers research topics · doi:10.3389/978-2-83250-838-1
Rubio, A. O., Miles, M. D. A., Dye, A. M., Stuckert, A. M. M., & Summers, K. (2025) · BMC Genomics · doi:10.1186/s12864-025-12381-4
Proteomic Analysis of Peroxisomal Proteins
Mi, J. (2007) · KTH Publication Database DiVA (KTH Royal Institute of Technology)
Self-citation
- Authors
- Mi, J., Kirchner, E., & Cristobal, S.
- Affiliations
- Uppsala University (SE)
- ORCID
- Mi, Jia
- Venue
- PROTEOMICS
- Publisher
- Wiley
- Published
- 2007-05-22
- Volume
- 7
- Issue
- 11
- Pages
- 1916-1928
- ISSN
- 1615-9853 (ISSN-L)
- 1615-9861
- OpenAlex
- W2039160682
- Cited by
- 46
- References
- 70
- Citations by year
- 2026: 1 · 2025: 3 · 2024: 2 · 2023: 2 · 2022: 4 · 2020: 1 · 2018: 4 · 2017: 2 · 2015: 2 · 2014: 1 · 2013: 4 · 2012: 1
- FWCI
- 2.62
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- PROTEOMICS (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Physical Sciences › Chemistry › Spectroscopy › Advanced Proteomics Techniques and Applications
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Clinical Biochemistry › Metabolism and Genetic Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Redox biology and oxidative stress
- Keywords
- peroxisomes, tissue-specific protein expression, liver, kidney, fatty acid beta-oxidation, isoprenoid biosynthesis, amino acid metabolism, purine and pyrimidine metabolism, lipid homeostasis
- MeSH terms
- Animals, Chromatography, Liquid, Kidney, Liver, Male, Mice, Inbred C57BL, Proteins, Databases as Topic, Peroxisomes, Spectrometry, Mass, Electrospray Ionization, Proteomics, Mice
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