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Target Recognition in Tandem WW Domains: Complex Structures for Parallel and Antiparallel Ligand Orientation in h-FBP21 Tandem WW

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Prediction of Protein-Protein Interactions: Looking Through the Kaleidoscope

Laddach, A., Chung, S. S., & Fraternali, F. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-809633-8.20470-6 · Cited by 6 · see citing works

Proximity-labeling proteomics reveals remodeled interactomes and altered localization of pathogenic SHP2 variants

van Vlimmeren, A. E., Tang, L. C., Jiang, Z., Iyer, A., Voleti, R., Krismer, K., Gaublomme, J. T., Jovanović, M., & Shah, N. H. (2025) · EMBO Reports · doi:10.1038/s44319-025-00674-4 · Cited by 5 · see citing works

Analyzing VEGFA/VEGFR1 Interaction: Application of the Resonant Recognition Model-Stockwell Transform Method to Explore Potential Therapeutics for Angiogenesis-Related Diseases

Mukherjee, T., Pattnaik, A. K., & Sahu, S. S. (2024) · The Protein Journal · doi:10.1007/s10930-024-10219-8 · Cited by 5 · see citing works

High Expression of PLAGL2 is Associated With Poor Prognosis in High-Grade Glioma

Wang, G., Du, W., Che, L., Gao, X., Zhao, R., Duan, J., Gu, Z., & Ma, Q. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2021.787746 · Cited by 5 · see citing works

Análisis estructural y funcional de macromoléculas

Córsico, B., Falomir‐Lockhart, L. J., Franchini, G. R., & Scaglia, N. (2013) · doi:10.35537/10915/37269 · Cited by 5 · see citing works

Proteomics-Based Analysis of Protein Complexes in Pluripotent Stem Cells and Cancer Biology

Sudhir, P., & Chen, C. (2016) · International Journal of Molecular Sciences · doi:10.3390/ijms17030432 · Cited by 5 · see citing works

PIPENN-EMB ensemble net and protein embeddings generalise protein interface prediction beyond homology

Thomas, D. P. G., Garcia Fernandez, C. M., Haydarlou, R., & Feenstra, K. A. (2025) · Scientific Reports · doi:10.1038/s41598-025-88445-y · Cited by 4 · see citing works

Identifying 14-3-3 interactome binding sites with deep learning

van Weesep, L., Özçelik, R., Pennings, M. A. M., Criscuolo, E., Ottmann, C., Brunsveld, L., & Grisoni, F. (2025) · Digital Discovery · doi:10.1039/d5dd00132c · Cited by 4 · see citing works

The rise of AlphaFold in drug design

Stecuła, A., Paul, R., Litchfield, K., Dalton, S. E., Low, C. M. R., Reis, C. R., & Congreve, M. (2025) · Progress in medicinal chemistry · doi:10.1016/bs.pmch.2025.09.002 · Cited by 4 · see citing works

Systems Pharmacology: Enabling Multidimensional Therapeutics

Maudsley, S. R., Leysen, H., van Gastel, J., & Martin, B. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-820472-6.00017-7 · Cited by 5 · see citing works

Leveraging structural and 2D-QSAR to investigate the role of functional group substitutions, conserved surface residues and desolvation in triggering the small molecule-induced dimerization of hPD-L1

Ahmed, M., Ganesan, A., & Barakat, K. (2022) · BMC Chemistry · doi:10.1186/s13065-022-00842-w · Cited by 4 · see citing works

Cell Cycle–Specific Protein Phosphatase 1 (PP1) Substrates Identification Using Genetically Modified Cell Lines

Kommer, D. C., Stamatiou, K., & Vagnarelli, P. (2024) · Methods in molecular biology · doi:10.1007/978-1-0716-3557-5_3 · Cited by 4 · see citing works

Soybean Malate Dehydrogenase: Evolutionary Relationship, Characterization of Their Functional Regulatory Elements, and Expression Profiles in Response to Abiotic Stresses

Islam, S. U., Khatun, S., Islam, M., Zohra, F. T., Rownaq, A., Rahman, S. M., & Sarkar, A. R. (2025) · Tropical Plant Biology · doi:10.1007/s12042-025-09394-4 · Cited by 3 · see citing works

A Tag-Based Affinity Purification Mass Spectrometry Workflow for Systematic Isolation of the Human Mitochondrial Protein Complexes

Wu, Z., Malty, R. H., Moutaoufik, M. T., Zhang, Q., Jessulat, M., & Babu, M. (2019) · Advances in experimental medicine and biology · doi:10.1007/978-981-13-8367-0_6 · Cited by 3 · see citing works

Structural Aspects of Protein–Protein Interactions

Poluri, K. M., Gulati, K., & Sarkar, S. (2021) · Springer eBooks · doi:10.1007/978-981-16-1594-8_2 · Cited by 3 · see citing works

FUNDAMENTALS OF PROTEIN-PROTEIN INTERACTIONS AND THEIR METHODS OF CHARACTERIZATION

Audah, K. A. (2021) · Bioinformatics and Biomedical Research Journal · doi:10.11594/bbrj.04.02.04 · Cited by 3 · see citing works

Multiplexed protein profiling reveals spatial subcellular signaling networks

Cai, S., Hu, T., Venkatesan, M., Allam, M., Schneider, F., Ramalingam, S. S., Sun, S., & Coskun, A. F. (2022) · iScience · doi:10.1016/j.isci.2022.104980 · Cited by 3 · see citing works

PyTEA-O: a Python implementation of Two-Entropies Analysis for protein sequence variation analysis

Kuin, R. C. M., Julian, A. T., Chander, J., Lee, S., & van Westen, G. J. P. (2026) · Bioinformatics · doi:10.1093/bioinformatics/btag043 · Cited by 2 · see citing works

Integrated transcriptomic and proteomic analysis of exogenous abscisic acid regulation on tuberous root development in Pseudostellaria heterophylla

Wang, C., Yang, J., Pan, Q., Zhu, P., & Li, J. (2024) · Frontiers in Nutrition · doi:10.3389/fnut.2024.1417526 · Cited by 2 · see citing works

Current Trend and Performance Evaluation of Machine Learning Methods for Predicting Host-Pathogen Protein-Protein Interactions

Emmanuel, J., Isewon, I., Olasehinde, G. I., & Oyelade, J. O. (2024) · International Conference on Science, Engineering and Business for Driving Sustainable Development Goals (SEB4SDG) · doi:10.1109/seb4sdg60871.2024.10629915 · Cited by 2 · see citing works

Applications of Two-Hybrid Systems and Mass Spectrometry to Investigate Protein-Protein Interactions

Zhang, Y. (2006) · Letters in Biotechnology

From pathways to networks: Connecting dots by establishing protein–protein interaction networks in signaling pathways using affinity purification and mass spectrometry

Li, X., Wang, W., & Chen, J. (2014) · PROTEOMICS · doi:10.1002/pmic.201400147 · Cited by 22 · see citing works

Illuminating Spatial and Temporal Organization of Protein Interaction Networks by Mass Spectrometry-Based Proteomics

Yang, J., Wagner, S., & Beli, P. (2015) · Frontiers in Genetics · doi:10.3389/fgene.2015.00344 · Cited by 23 · see citing works

Identification of Signaling Protein Complexes by Parallel Affinity Precipitation Coupled with Mass Spectrometry

Heng Lu, Q. L. A. J. Z. (2013) · Cell Communication Insights · doi:10.4137/cci.s12484 · Cited by 1 · see citing works

Simple and Effective Affinity Purification Procedures for Mass Spectrometry-Based Identification of Protein-Protein Interactions in Cell Signaling Pathways

Kwan, J., & Emili, A. (2015) · Methods in molecular biology · doi:10.1007/978-1-4939-3341-9_13 · Cited by 3 · see citing works