A comprehensive two-hybrid analysis to explore the yeast protein interactome

KEGG: Kyoto Encyclopedia of Genes and Genomes

Kanehisa, M. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.27 · Cited by 37,077 · see citing works

KEGG: Kyoto Encyclopedia of Genes and Genomes

Ogata, H., Goto, S., Sato, K., Fujibuchi, W., Bono, H., & Kanehisa, M. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.1.29 · Cited by 31,232 · see citing works

The complete genome sequence of Escherichia coli K-12.

Blattner, F., Plunkett, G., Bloch, C., Perna, N., Burland, V., Riley, M., Collado-Vides, J., Glasner, J. D., Rode, C., Mayhew, G., et al. (1997) · Science · doi:10.1126/science.277.5331.1453 · Cited by 7,996 · see citing works

A novel genetic system to detect protein–protein interactions

Fields, S., & Song, O.-K. (1989) · Nature · doi:10.1038/340245a0 · Cited by 6,152 · see citing works

A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae

Uetz, P., Giot, L., Cagney, G., Mansfield, T. A., Judson, R. S., Knight, J. R., Lockshon, D., Narayan, V., Srinivasan, M., Pochart, P., et al. (2000) · Nature · doi:10.1038/35001009 · Cited by 4,706 · see citing works

Life with 6000 Genes

Goffeau, A., Barrell, B., Bussey, H., Davis, R. W., Dujon, B., Feldmann, H., Galibert, F., Hoheisel, J., Jacq, C., Johnston, M., et al. (1996) · Science · doi:10.1126/science.274.5287.546 · Cited by 4,420 · see citing works

Functional Characterization of the <i>S. cerevisiae</i> Genome by Gene Deletion and Parallel Analysis

Winzeler, E. A., Shoemaker, D. D., Astromoff, A., Liang, H., Anderson, K., Andre, B., Bangham, R., Benito, R., Boeke, J. D., Bussey, H., et al. (1999) · Science · doi:10.1126/science.285.5429.901 · Cited by 3,953 · see citing works

Printing Proteins as Microarrays for High-Throughput Function Determination

MacBeath, G., & Schreiber, S. L. (2000) · Science · doi:10.1126/science.289.5485.1760 · Cited by 2,767 · see citing works

Genomic Libraries and a Host Strain Designed for Highly Efficient Two-Hybrid Selection in Yeast

James, P. M., Halladay, J. T., & Craig, E. A. (1996) · Genetics · doi:10.1093/genetics/144.4.1425 · Cited by 2,638 · see citing works

Proteomics to study genes and genomes

Pandey, A., & Mann, M. (2000) · Nature · doi:10.1038/35015709 · Cited by 2,373 · see citing works

Genomics, gene expression and DNA arrays

Lockhart, D. J., & Winzeler, E. A. (2000) · Nature · doi:10.1038/35015701 · Cited by 2,055 · see citing works

Functional genomic analysis of C. elegans chromosome I by systematic RNA interference

Fraser, A. G., Kamath, R. S., Zipperlen, P., Martinez-Campos, M., Sohrmann, M., & Ahringer, J. (2000) · Nature · doi:10.1038/35042517 · Cited by 1,720 · see citing works

A network of protein–protein interactions in yeast

Schwikowski, B., Uetz, P. H., & Fields, S. (2000) · Nature Biotechnology · doi:10.1038/82360 · Cited by 1,371 · see citing works

DIP: the Database of Interacting Proteins

Xénarios, I. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.289 · Cited by 1,125 · see citing works

Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens

Fromont‐Racine, M., Rain, J., & Legrain, P. (1997) · Nature Genetics · doi:10.1038/ng0797-277 · Cited by 913 · see citing works

Functional genomic analysis of cell division in C. elegans using RNAi of genes on chromosome III

Gönczy, P., Echeverri, C. J., Oegema, K., Coulson, A. R., Jones, S. J. M., Copley, R. R., Duperon, J., Oegema, J., Brehm, M., Cassin, E., et al. (2000) · Nature · doi:10.1038/35042526 · Cited by 858 · see citing works

Toward a protein–protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins

Ito, T., Tashiro, K., Muta, S., Ozawa, R., Chiba, T., Nishizawa, M., Yamamoto, K., Kuhara, S., & Sakaki, Y. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.97.3.1143 · Cited by 814 · see citing works

Protein Interaction Mapping in C. elegans Using Proteins Involved in Vulval Development

Walhout, A. J. M., Sordella, R., Lu, X., Hartley, J. L., Temple, G. F., Brasch, M. A., Thierry‐Mieg, N., & Vidal, M. (2000) · Science · doi:10.1126/science.287.5450.116 · Cited by 757 · see citing works

Vacuolar Import of Proteins and Organelles From The Cytoplasm

Klionsky, D. J., & Ohsumi, Y. (1999) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev.cellbio.15.1.1 · Cited by 467 · see citing works

A complex of mammalian Ufd1 and Npl4 links the AAA‐ATPase, p97, to ubiquitin and nuclear transport pathways

Meyer, H. H., Shorter, J., Seemann, J., Pappin, D., & Warren, G. (2000) · The EMBO Journal · doi:10.1093/emboj/19.10.2181 · Cited by 446 · see citing works

Reverse two-hybrid and one-hybrid systems to detect dissociation of protein-protein and DNA-protein interactions.

Vidal, M., Brachmann, R. K., Fattaey, A., Harlow, E., & Boeke, J. D. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.19.10315 · Cited by 428 · see citing works

The Yeast Proteome Database (YPD) and Caenorhabditis elegans Proteome Database (WormPD): comprehensive resources for the organization and comparison of model organism protein information

Costanzo, M. C. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.73 · Cited by 288 · see citing works

A computationally directed screen identifying interacting coiled coils from Saccharomyces cerevisiae

Newman, J. R., Wolf, E., & Kim, P. S. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.97.24.13203 · Cited by 148 · see citing works

Genome‐wide protein interaction maps using two‐hybrid systems

Legrain, P., & Selig, L. (2000) · FEBS Letters · doi:10.1016/s0014-5793(00)01774-9 · Cited by 148 · see citing works

Systematic and large-scale two-hybrid screens

Uetz, P. H. (2000) · Current Opinion in Microbiology · doi:10.1016/s1369-5274(00)00094-1 · Cited by 138 · see citing works

A novel Golgi membrane protein is part of a GTPase‐binding protein complex involved in vesicle targeting

Matern, H. T., Yang, X., Andrulis, E. D., et al. (2000) · The EMBO Journal · doi:10.1093/emboj/19.17.4485 · Cited by 99 · see citing works

The continued evolution of two-hybrid screening approaches in yeast: how to outwit different preys with different baits

Fashena, S. J., Serebriiskii, I. G., & Golemis, E. A. (2000) · Gene · doi:10.1016/s0378-1119(00)00182-7 · Cited by 68 · see citing works

Genome-Wide Protein Interaction Screens Reveal Functional Networks Involving Sm-Like Proteins

Fromont‐Racine, M., Mayes, A. E., Simon, A., et al. (2000) · Yeast · doi:10.1155/2000/919260 · Cited by 54 · see citing works

Integrative analysis of protein interaction data.

Fellenberg, M., Albermann, K., Zollner, A., et al. (2000) · PubMed · Cited by 46 · see citing works

Systematic function analysis of genes

Ogasawara, N. (2000) · Research in Microbiology · doi:10.1016/s0923-2508(00)00118-2 · Cited by 41 · see citing works

Yeast Two-Hybrid Systems and Protein Interaction Mapping Projects for Yeast and Worm

Walhout, A. J. M., Boulton, S. J., & Vidal, M. (2000) · Yeast · doi:10.1155/2000/156745 · Cited by 31 · see citing works

A guided tour in protein interaction space: Coiled coils from the yeast proteome

Hu, J. C. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.97.24.12935 · Cited by 13 · see citing works

Genomes 2000 International Conference on Microbial and Model Genomes

Wixon, J. (2000) · Yeast · doi:10.1002/1097-0061(20000630)17:2 · Cited by 3 · see citing works

Network biology: understanding the cell's functional organization

Barabási, A.-L., & Oltvai, Z. N. (2004) · Nature Reviews Genetics · doi:10.1038/nrg1272 · Cited by 7,903 · see citing works

Global analysis of protein localization in budding yeast

Huh, W.-K., Falvo, J. V., Gerke, L. C., Carroll, A. S., Howson, R. W., Weissman, J. S., & O'Shea, E. K. (2003) · Nature · doi:10.1038/nature02026 · Cited by 4,248 · see citing works

BioGRID: a general repository for interaction datasets

Stark, C. (2006) · Nucleic Acids Research · doi:10.1093/nar/gkj109 · Cited by 3,960 · see citing works

The Database of Interacting Proteins: 2004 update

Salwinski, L. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh086 · Cited by 2,271 · see citing works

Hierarchical structure and the prediction of missing links in networks

Clauset, A., Moore, C., & Newman, M. E. J. (2008) · Nature · doi:10.1038/nature06830 · Cited by 2,171 · see citing works

Interactome Networks and Human Disease

Vidal, M., Cusick, M. E., & Barabási, A.-L. (2011) · Cell · doi:10.1016/j.cell.2011.02.016 · Cited by 1,771 · see citing works

Protein Analysis by Shotgun/Bottom-up Proteomics

Zhang, Y., Fonslow, B. R., Shan, B., Baek, M.-C., & Yates, J. R. (2013) · Chemical Reviews · doi:10.1021/cr3003533 · Cited by 1,491 · see citing works

High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

Yu, H., Braun, P., Yıldırım, M. A., Lemmens, I., Venkatesan, K., Sahalie, J., Hirozane-Kishikawa, T., Gebreab, F., Li, N., Simonis, N., et al. (2008) · Science · doi:10.1126/science.1158684 · Cited by 1,392 · see citing works

P bodies and the control of mRNA translation and degradation

Parker, R., & Sheth, U. (2007) · Molecular Cell · doi:10.1016/j.molcel.2007.02.011 · Cited by 1,335 · see citing works

Cell Wall Integrity Signaling in <i>Saccharomyces cerevisiae</i>

Levin, D. E. (2005) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.69.2.262-291.2005 · Cited by 1,136 · see citing works

Flexible nets: The roles of intrinsic disorder in protein interaction networks

Dunker, A. K., Cortese, M. S., Romero, P., Iakoucheva, L. M., & Uversky, V. N. (2005) · The FEBS Journal · doi:10.1111/j.1742-4658.2005.04948.x · Cited by 1,122 · see citing works

Genome-Scale Reconstruction of the <i>Saccharomyces cerevisiae</i> Metabolic Network

Förster, J., Famili, I., Fu, P., Palsson, B. Ø., & Nielsen, J. (2003) · Genome Research · doi:10.1101/gr.234503 · Cited by 1,069 · see citing works

Exploration of the Function and Organization of the Yeast Early Secretory Pathway through an Epistatic Miniarray Profile

Schuldiner, M., Collins, S. R., Thompson, N. J., Denic, V., Bhamidipati, A., Punna, T., Ihmels, J., Andrews, B., Boone, C., Greenblatt, J. F., et al. (2005) · Cell · doi:10.1016/j.cell.2005.08.031 · Cited by 870 · see citing works

Navigating the Chaperone Network: An Integrative Map of Physical and Genetic Interactions Mediated by the Hsp90 Chaperone

Zhao, R., Davey, M., Hsu, Y.-C., Kaplanek, P., Tong, A., Parsons, A. B., Krogan, N., Cagney, G., Mai, D., Greenblatt, J., et al. (2005) · Cell · doi:10.1016/j.cell.2004.12.024 · Cited by 819 · see citing works

Protein-Protein Interaction Detection: Methods and Analysis

Rao, V. S., Srinivas, K., Sujini, G. N., & Kumar, G. N. S. (2014) · International Journal of Proteomics · doi:10.1155/2014/147648 · Cited by 811 · see citing works

Protein networks in disease

Ideker, T., & Sharan, R. (2008) · Genome Research · doi:10.1101/gr.071852.107 · Cited by 817 · see citing works

Toward a Comprehensive Atlas of the Physical Interactome of Saccharomyces cerevisiae

Collins, S. R., Kemmeren, P., Zhao, X.-C., Greenblatt, J. F., Spencer, F., Holstege, F. C. P., Weissman, J. S., & Krogan, N. J. (2007) · Molecular &amp; Cellular Proteomics · doi:10.1074/mcp.m600381-mcp200 · Cited by 795 · see citing works

A Protein–Protein Interaction Network for Human Inherited Ataxias and Disorders of Purkinje Cell Degeneration

Lim, J., Hao, T., Shaw, C., Patel, A. J., Szabó, G., Rual, J.-F., Fisk, C. J., Li, N., Smolyar, A., Hill, D. E., et al. (2006) · Cell · doi:10.1016/j.cell.2006.03.032 · Cited by 789 · see citing works

Phosphotyrosine interactome of the ErbB‐receptor kinase family

Schulze, W. X., Deng, L., & Mann, M. (2005) · Molecular Systems Biology · doi:10.1038/msb4100012 · Cited by 753 · see citing works

CAPRI: A Critical Assessment of PRedicted Interactions

Janin, J., Henrick, K., Moult, J., Eyck, L. T., Sternberg, M. J. E., Vajda, S., Vakser, I., & Wodak, S. J. (2003) · Proteins: Structure, Function, and Bioinformatics · doi:10.1002/prot.10381 · Cited by 703 · see citing works

Genome-wide analysis reveals mechanisms modulating autophagy in normal brain aging and in Alzheimer’s disease

Lipinski, M. M., Zheng, B., Lu, T., Yan, Z., Py, B. F., Ng, A., Xavier, R. J., Li, C., Yankner, B. A., Scherzer, C. R., et al. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1009485107 · Cited by 680 · see citing works

Exploring genetic interactions and networks with yeast

Boone, C., Bussey, H., & Andrews, B. J. (2007) · Nature Reviews Genetics · doi:10.1038/nrg2085 · Cited by 661 · see citing works

Exploration of Essential Gene Functions via Titratable Promoter Alleles

Mnaimneh, S., Davierwala, A. P., Haynes, J., Moffat, J., Peng, W.-T., Zhang, W., Yang, X., Pootoolal, J., Chua, G., Lopez, A., et al. (2004) · Cell · doi:10.1016/j.cell.2004.06.013 · Cited by 604 · see citing works

Computed structures of core eukaryotic protein complexes

Humphreys, I. R., Pei, J., Baek, M., Krishnakumar, A., Anishchenko, I., Ovchinnikov, S., Zhang, J., Ness, T. J., Banjade, S., Bagde, S. R., et al. (2021) · Science · doi:10.1126/science.abm4805 · Cited by 542 · see citing works

Integrative approaches for finding modular structure in biological networks

Mitra, K., Carvunis, A.-R., Ramesh, S. K., & Ideker, T. (2013) · Nature Reviews Genetics · doi:10.1038/nrg3552 · Cited by 535 · see citing works

Comprehensive Identification of Human bZIP Interactions with Coiled-Coil Arrays

Newman, J. R. S., & Keating, A. E. (2003) · Science · doi:10.1126/science.1084648 · Cited by 449 · see citing works

Cell-cell communication: New insights and clinical implications

Su, J., Song, Y., Zhu, Z., Huang, X., Fan, J., Qiao, J., & Mao, F. (2024) · Signal Transduction and Targeted Therapy · doi:10.1038/s41392-024-01888-z · Cited by 433 · see citing works

Large-scale identification of protein–protein interaction of <i>Escherichia coli</i> K-12

Arifuzzaman, M., Maeda, M., Itoh, A., Nishikata, K., Takita, C., Saito, R., Ara, T., Nakahigashi, K., Huang, H.-C., Hirai, A., et al. (2006) · Genome Research · doi:10.1101/gr.4527806 · Cited by 403 · see citing works

Deep learning in bioinformatics: Introduction, application, and perspective in the big data era

Li, Y., Huang, C., Ding, L., Li, Z., Pan, Y., & Gao, X. (2019) · Methods · doi:10.1016/j.ymeth.2019.04.008 · Cited by 401 · see citing works

Predicting Protein–Protein Interactions from the Molecular to the Proteome Level

Keskin, O., Tuncbag, N., & Gursoy, A. (2016) · Chemical Reviews · doi:10.1021/acs.chemrev.5b00683 · Cited by 369 · see citing works

Systematic Discovery of New Recognition Peptides Mediating Protein Interaction Networks

Neduva, V., Linding, R., Su-Angrand, I., Stark, A., Masi, F. D., Gibson, T. J., Lewis, J., Serrano, L., & Russell, R. B. (2005) · PLoS Biology · doi:10.1371/journal.pbio.0030405 · Cited by 359 · see citing works

Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae

Reguly, T., Breitkreutz, A., Boucher, L., Breitkreutz, B.-J., Hon, G. C., Myers, C. L., Parsons, A., Friesen, H., Oughtred, R., Tong, A., et al. (2006) · Journal of Biology · doi:10.1186/jbiol36 · Cited by 326 · see citing works

Bridging structural biology and genomics: assessing protein interaction data with known complexes

Edwards, A. M., Kus, B., Jansen, R., Greenbaum, D., Greenblatt, J., & Gerstein, M. (2002) · Trends in Genetics · doi:10.1016/s0168-9525(02)02763-4 · Cited by 276 · see citing works

Trans-Omics: How To Reconstruct Biochemical Networks Across Multiple ‘Omic’ Layers

Yugi, K., Kubota, H., Hatano, A., & Kuroda, S. (2016) · Trends in Biotechnology · doi:10.1016/j.tibtech.2015.12.013 · Cited by 258 · see citing works

The <i>S. cerevisiae</i> SET3 complex includes two histone deacetylases, Hos2 and Hst1, and is a meiotic-specific repressor of the sporulation gene program

Pijnappel, W. W. M. P., Schaft, D., Roguev, A., Shevchenko, A., Tekotte, H., Wilm, M., Rigaut, G., Séraphin, B., Aasland, R., & Stewart, A. F. (2001) · Genes &amp; Development · doi:10.1101/gad.207401 · Cited by 265 · see citing works

Combining biological networks to predict genetic interactions

Wong, S. L., Zhang, L. V., Tong, A. H. Y., Li, Z., Goldberg, D. S., King, O. D., Lesage, G., Vidal, M., Andrews, B., Bussey, H., et al. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0406614101 · Cited by 245 · see citing works

Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics

Sardiu, M. E., Cai, Y., Jin, J., Swanson, S. K., Conaway, R. C., Conaway, J. W., Florens, L., & Washburn, M. P. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0706983105 · Cited by 226 · see citing works

The Conserved Transmembrane Nucleoporin NDC1 Is Required for Nuclear Pore Complex Assembly in Vertebrate Cells

Mansfeld, J., Güttinger, S., Hawryluk-Gara, L. A., Panté, N., Mall, M., Galy, V., Haselmann, U., Mühlhäusser, P., Wozniak, R. W., Mattaj, I. W., et al. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.02.015 · Cited by 221 · see citing works

Integrating physical and genetic maps: from genomes to interaction networks

Beyer, A., Bandyopadhyay, S., & Ideker, T. (2007) · Nature Reviews Genetics · doi:10.1038/nrg2144 · Cited by 207 · see citing works

Protein-protein interaction networks and biology—what's the connection?

Hakes, L., Pinney, J. W., Robertson, D. L., & Lovell, S. C. (2008) · Nature Biotechnology · doi:10.1038/nbt0108-69 · Cited by 200 · see citing works

Correlation between gene expression profiles and protein-protein interactions within and across genomes

Bhardwaj, N., & Lu, H. (2005) · Bioinformatics · doi:10.1093/bioinformatics/bti398 · Cited by 186 · see citing works

Where Have All the Interactions Gone? Estimating the Coverage of Two-Hybrid Protein Interaction Maps

Huang, H., Jedynak, B. M., & Bader, J. S. (2007) · PLoS Computational Biology · doi:10.1371/journal.pcbi.0030214 · Cited by 182 · see citing works

TRAM, LAG1 and CLN8: members of a novel family of lipid-sensing domains?

Winter, E., & Ponting, C. P. (2002) · Trends in Biochemical Sciences · doi:10.1016/s0968-0004(02)02154-0 · Cited by 181 · see citing works

Biochemical approaches for discovering protein–protein interactions

Miernyk, J. A., & Thelen, J. J. (2008) · The Plant Journal · doi:10.1111/j.1365-313x.2007.03316.x · Cited by 165 · see citing works

Mechanisms of replication fork protection: a safeguard for genome stability

Errico, A., & Costanzo, V. (2012) · Critical Reviews in Biochemistry and Molecular Biology · doi:10.3109/10409238.2012.655374 · Cited by 159 · see citing works

Molecular architecture of the yeast Mediator complex

Robinson, P. J., Trnka, M. J., Pellarin, R., Greenberg, C. H., Bushnell, D. A., Davis, R., Burlingame, A. L., Sali, A., & Kornberg, R. D. (2015) · eLife · doi:10.7554/elife.08719 · Cited by 150 · see citing works

Identification of Protein Interactions Involved in Cellular Signaling

Westermarck, J., Ivaska, J., & Corthals, G. L. (2013) · Molecular &amp; Cellular Proteomics · doi:10.1074/mcp.r113.027771 · Cited by 143 · see citing works

Localization and roles of Ski8p protein in Sordaria meiosis and delineation of three mechanistically distinct steps of meiotic homolog juxtaposition

Tessé, S., Storlazzi, A., Kleckner, N., Gargano, S., & Zickler, D. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2034282100 · Cited by 132 · see citing works

Robotic cloning and protein production platform of the northeast structural genomics consortium

Acton, T. B., Gunsalus, K. C., Xiao, R., Ma, L. C., Aramini, J., Baran, M. C., Chiang, Y.-W., Climent, T., Cooper, B., Denissova, N. G., et al. (2005) · Methods in Enzymology · doi:10.1016/s0076-6879(05)94008-1 · Cited by 129 · see citing works

Phosphorylation of Slx4 by Mec1 and Tel1 regulates the single-strand annealing mode of DNA repair in budding yeast

Flott, S., Alabert, C., Toh, G. W., Toth, R., Sugawara, N., Campbell, D. G., Haber, J. E., Pasero, P., & Rouse, J. (2007) · Molecular and Cellular Biology · doi:10.1128/mcb.00135-07 · Cited by 107 · see citing works

Tipin is required for stalled replication forks to resume DNA replication after removal of aphidicolin in <i>Xenopus</i> egg extracts

Errico, A., Costanzo, V., & Hunt, T. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0706347104 · Cited by 92 · see citing works

A map of human protein interactions derived from co‐expression of human mRNAs and their orthologs

Ramani, A. K., Li, Z., Hart, G. T., Carlson, M. W., Boutz, D. R., & Marcotte, E. M. (2008) · Molecular Systems Biology · doi:10.1038/msb.2008.19 · Cited by 78 · see citing works

Deletions of Endocytic Components <i>VPS28</i> and <i>VPS32</i> Affect Growth at Alkaline pH and Virulence through both <i>RIM101</i> -Dependent and <i>RIM101</i> -Independent Pathways in <i>Candida albicans</i>

Cornet, M., Bidard, F., Schwarz, P., Da Costa, G., Blanchin-Roland, S., Dromer, F., & Gaillardin, C. (2005) · Infection and Immunity · doi:10.1128/iai.73.12.7977-7987.2005 · Cited by 70 · see citing works

Integrative structure modeling of macromolecular assemblies from proteomics data

Lasker, K., Phillips, J. L., Russel, D., Velázquez-Muriel, J., Schneidman-Duhovny, D., Tjioe, E., Webb, B., Schlessinger, A., & Sali, A. (2010) · Molecular &amp; Cellular Proteomics · doi:10.1074/mcp.r110.000067 · Cited by 71 · see citing works

Temporal patterns of genes in scientific publications

Pfeiffer, T., & Hoffmann, R. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0701315104 · Cited by 64 · see citing works

M-TASSER: An Algorithm for Protein Quaternary Structure Prediction

Chen, H., & Skolnick, J. (2008) · Biophysical Journal · doi:10.1529/biophysj.107.114280 · Cited by 68 · see citing works

Measuring graph similarity through continuous-time quantum walks and the quantum Jensen-Shannon divergence

Rossi, L., Torsello, A., & Hancock, E. R. (2015) · Physical Review E · doi:10.1103/physreve.91.022815 · Cited by 46 · see citing works

Higher-order molecular organization as a source of biological function

Gaudelet, T., Malod-Dognin, N., & Pržulj, N. (2018) · Bioinformatics · doi:10.1093/bioinformatics/bty570 · Cited by 46 · see citing works

Reprogramming of carbon metabolism by the transcriptional activators AcuK and AcuM in <i>Aspergillus nidulans</i>

Suzuki, Y., Murray, S. L., Wong, K. H., Davis, M. A., & Hynes, M. J. (2012) · Molecular Microbiology · doi:10.1111/j.1365-2958.2012.08067.x · Cited by 46 · see citing works

Specific interactions of PP2A and PP2A-like phosphatases with the yeast PTPA homologues, Ypa1 and Ypa2

Van HOOF, C., MARTENS, E., LONGIN, S., JORDENS, J., STEVENS, I., JANSSENS, V., & GORIS, J. (2005) · Biochemical Journal · doi:10.1042/bj20040887 · Cited by 42 · see citing works

Beyond hairballs: The use of quantitative mass spectrometry data to understand protein–protein interactions

Gingras, A.-C., & Raught, B. (2012) · FEBS Letters · doi:10.1016/j.febslet.2012.03.065 · Cited by 34 · see citing works

Introduction

Janin, J., & Wodak, S. J. (2002) · Advances in Protein Chemistry · doi:10.1016/s0065-3233(02)61000-9 · Cited by 31 · see citing works

<i>Candida glabrata</i> : new tools and technologies—expanding the toolkit

Ho, H.-L., & Haynes, K. (2015) · FEMS Yeast Research · doi:10.1093/femsyr/fov066 · Cited by 29 · see citing works

Lst4, the yeast Fnip1/2 orthologue, is a DENN-family protein

Pacitto, A., Ascher, D. B., Wong, L. H., Blaszczyk, B. K., Nookala, R. K., Zhang, N., Dokudovskaya, S., Levine, T. P., & Blundell, T. L. (2015) · Open Biology · doi:10.1098/rsob.150174 · Cited by 28 · see citing works

Two Zinc-Cluster Transcription Factors Control Induction of Alternative Oxidase in <i>Neurospora crassa</i>

Chae, M. S., Nargang, C. E., Cleary, I. A., Lin, C. C., Todd, A. T., & Nargang, F. E. (2007) · Genetics · doi:10.1534/genetics.107.078212 · Cited by 22 · see citing works

Investigation of regulatory factors required for alternative oxidase production in <i>Neurospora crassa</i>

Chae, M. S., & Nargang, F. E. (2009) · Physiologia Plantarum · doi:10.1111/j.1399-3054.2009.01239.x · Cited by 17 · see citing works

Network-Free Inference of Knockout Effects in Yeast

Peleg, T., Yosef, N., Ruppin, E., & Sharan, R. (2010) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1000635 · Cited by 14 · see citing works

Non-essential genes form the hubs of genome scale protein function and environmental gene expression networks in Salmonella entericaserovar Typhimurium

Rosenkrantz, J. T., Aarts, H., Abee, T., Rolfe, M. D., Knudsen, G. M., Nielsen, M.-B., Thomsen, L. E., Zwietering, M. H., Olsen, J. E., & Pin, C. (2013) · BMC Microbiology · doi:10.1186/1471-2180-13-294 · Cited by 13 · see citing works

Studies of ORC dimerization and de-dimerization in the budding yeast saccharomyces cerevisiae

Zhou, Z. (2013) · doi:10.14711/thesis-b1254348

Characterization of the role of Orc6 in the cell cycle of the budding yeast Saccharomyces cerevisiae

Semple, J. W. (2006) · Cited by 1 · see citing works

Network Analysis of Saccharomyces cerevisiae

Purnama, F. A., Meiriska, W., Aji, D. P. P., et al. (2019) · Journal of Physics Conference Series · doi:10.1088/1742-6596/1245/1/012081 · Cited by 1 · see citing works

Human protein-protein interactome

Wang, H. (2012)

Plant Protein Interactomes

Falter‐Braun, P., Aubourg, S., Leene, J. V., Jaeger, G. D., & Claire Lurin, A. (2013) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-050312-120140 · Cited by 126 · see citing works