The DOI matches its Crossref record; 7 of the 7 references it cites were found in a registry or an index.
Potential Applications and Pitfalls of Bayesian Inference of Phylogeny
Abstract
Only recently has Bayesian inference of phylogeny been proposed. The method is now a practical alternative to the other methods; indeed, the method appears to possess advantages over the other methods in terms of ability to use complex models of evolution, ease of interpretation of the results, and computational efficiency. However, the method should be used cautiously. The results of a Bayesian analysis should be examined with respect to the sensitivity of the results to the priors used and the reliability of the Markov chain Monte Carlo approximation of the probabilities of trees.
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Cites
Gelman, A., Carlin, J. B., Stern, H. S., & Rubin, D. B. (2003) · doi:10.1201/9780429258480 · Cited by 27,276
Practical markov chain monte carlo
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Estimating the rate of evolution of the rate of molecular evolution
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Divergence time and evolutionary rate estimation with multilocus data.
Thorne, J. L., & Kishino, H. (2002) · Systematic Biology · doi:10.1080/10635150290102456 · Cited by 962
Aris-Brosou, S., & Yang, Z. (2002) · Systematic Biology · doi:10.1080/10635150290102375 · Cited by 230 · cited 3×
“For example, Rannala and Yang (1996) placed a birth–death prior on trees, giving equal weight to labeled histories.”
BackgroundMethodBayesian Model Adequacy and Choice in Phylogenetics
Bollback, J. P. (2002) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a004175 · Cited by 215
Identifiability of Parameters in MCMC Bayesian Inference of Phylogeny
Rannala, B. (2002) · Systematic Biology · doi:10.1080/10635150290102429 · Cited by 190
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Anisimova, M., & Gascuel, O. (2006) · Systematic Biology · doi:10.1080/10635150600755453 · Cited by 2,693
A Bayesian Mixture Model for Across-Site Heterogeneities in the Amino-Acid Replacement Process
Lartillot, N., & Philippe, H. (2004) · Molecular Biology and Evolution · doi:10.1093/molbev/msh112 · Cited by 1,516
A review of long-branch attraction
Bergsten, J. (2005) · Cladistics · doi:10.1111/j.1096-0031.2005.00059.x · Cited by 1,162
Computing Bayes factors using thermodynamic integration.
Lartillot, N., & Philippe, H. (2006) · Systematic Biology · doi:10.1080/10635150500433722 · Cited by 668
LIVEZEY, B. C., & ZUSI, R. L. (2007) · Zoological Journal of the Linnean Society · doi:10.1111/j.1096-3642.2006.00293.x · Cited by 574
The importance of proper model assumption in bayesian phylogenetics.
Lemmon, A. R., & Moriarty, E. C. (2004) · Systematic Biology · doi:10.1080/10635150490423520 · Cited by 356
Clarke, J. A., & Middleton, K. M. (2008) · Systematic Biology · doi:10.1080/10635150802022231 · Cited by 137
Whelan, N. V., & Halanych, K. M. (2016) · Systematic Biology · doi:10.1093/sysbio/syw084 · Cited by 96
Bayha, K. M., Dawson, M. N., Collins, A. G., Barbeitos, M. S., & Haddock, S. H. D. (2010) · Integrative and Comparative Biology · doi:10.1093/icb/icq074 · Cited by 102
Annexin-like alpha giardins: a new cytoskeletal gene family in Giardia lamblia
Weiland, M. E.-L., McArthur, A. G., Morrison, H. G., Sogin, M. L., & Svärd, S. G. (2005) · International Journal for Parasitology · doi:10.1016/j.ijpara.2004.12.009 · Cited by 93
Peucker, A. J., Dann, P., & Burridge, C. P. (2009) · The Auk · doi:10.1525/auk.2009.08055 · Cited by 45
Metadata
- Authors
- Huelsenbeck, J. P., Larget, B., Miller, R. E., & Ronquist, F.
- Venue
- Systematic Biology
- Publisher
- Oxford University Press (OUP)
- Published
- 2002-09-01
- Volume
- 51
- Issue
- 5
- Pages
- 673-688
- ISSN
- 1063-5157 (ISSN-L)
- 1076-836X
- OpenAlex
- W2152886327
- Cited by
- 812
- References
- 7
- FWCI
- 24.19
- Type
- journal article
- Language
- en
- Open access
- closed
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