Tuning the ribosome: The influence of rRNA modification on eukaryotic ribosome biogenesis and function

Gene expression regulation mediated through reversible m6A RNA methylation

Fu, Y., Dominissini, D., Rechavi, G., & He, C. (2014) · Nature Reviews Genetics · doi:10.1038/nrg3724 · Cited by 1,961

The Structure of the Eukaryotic Ribosome at 3.0 Å Resolution

Shem, A. B., de Loubresse, N. G., Melnikov, S. V., Jenner, L. B., Yusupova, G. Z., & Yusupov, M. (2011) · Science · doi:10.1126/science.1212642 · Cited by 1,187

Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells

Carlile, T. M., Rojas-Durán, M. F., Zinshteyn, B., Shin, H., Bartoli, K. M., & Gilbert, W. V. (2014) · Nature · doi:10.1038/nature13802 · Cited by 1,042

Transcriptome-wide Mapping Reveals Widespread Dynamic-Regulated Pseudouridylation of ncRNA and mRNA

Schwartz, S., Bernstein, D. A., Mumbach, M. R., Jovanović, M., Herbst, R. H., León-Ricardo, B. X., Engreitz, J., Guttman, M., Satija, R., Lander, E. S., et al. (2014) · Cell · doi:10.1016/j.cell.2014.08.028 · Cited by 1,013

MODOMICS: a database of RNA modification pathways—2013 update

Machnicka, M. A., Milanowska, K., Oglou, O. O., Purta, E., Kurkowska, M., Olchowik, A., Januszewski, W., Kalinowski, S., Dunin-Horkawicz, S., Rother, K. M., et al. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks1007 · Cited by 1,003

X-linked dyskeratosis congenita is caused by mutations in a highly conserved gene with putative nucleolar functions

Heiss, N. S., Knight, S. W., Vulliamy, T. J., Klauck, S. M., Wiemann, S., Mason, P. J., Poustka, A., & Dokal, I. (1998) · Nature Genetics · doi:10.1038/ng0598-32 · Cited by 976

Site-Specific Ribose Methylation of Preribosomal RNA: A Novel Function for Small Nucleolar RNAs

Kiss-László, Z., Henry, Y. A. L., Bachellerie, J., Caizergues‐Ferrer, M., & Kiss, T. (1996) · Cell · doi:10.1016/s0092-8674(00)81308-2 · Cited by 855

The RNA modification database, RNAMDB: 2011 update

Cantara, W. A., Crain, P. F., Rozenski, J., McCloskey, J. A., Harris, K. A., Zhang, X., Vendeix, F. A. P., Fabris, D., & Agris, P. F. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq1028 · Cited by 822

Ribosome Biogenesis in the Yeast Saccharomyces cerevisiae

Woolford, J. L., & Baserga, S. J. (2013) · Genetics · doi:10.1534/genetics.113.153197 · Cited by 780

Specialized ribosomes: a new frontier in gene regulation and organismal biology

Xue, S., & Barna, M. (2012) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm3359 · Cited by 730

SnoRNA signatures in cartilage ageing and osteoarthritisPreprint

Peffers, M. J., Chabronova, A., Balaskas, P., Fang, Y., Dyer, P., Cremers, A., Emans, P. J., Feczkó, P. Z., Caron, M. M. J., & Welting, T. J. M. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.04.01.019505 · Cited by 3

A translation control module coordinates germline stem cell differentiation with ribosome biogenesis during Drosophila oogenesisPreprint

Martin, E. T., Blatt, P., Ngyuen, E., Lahr, R. M., Selvam, S., Yoon, H. A. M., Pocchiari, T., Emtenani, S., Siekhaus, D. E., Berman, A. J., et al. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.04.04.438367 · Cited by 3

Deep assessment of human disease-associated ribosomal RNA modifications using Nanopore direct RNA sequencingPreprint

Vries, I. S. N., Zorbas, C., Lemsara, A., Bencun, M., Schudy, S., Meder, B., Eschenbach, J., Lafontaine, D. L. J., & Dieterich, C. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.11.10.467884 · Cited by 3

Cryo-EM reconstruction of the human 40S ribosomal subunit at 2.15 Å resolution

Pellegrino, S., Dent, K. C., Spikes, T., & Warren, A. J. (2022) · doi:10.1101/2022.01.16.475527 · Cited by 3

Selective detection of m 6 A derived from mRNA using the Phospho-tag m 6 A assayPreprint

Mirza, A. H., Attarwala, N., Gross, S. S., Chen, Q., & Jaffrey, S. R. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.05.23.493172 · Cited by 3

Noncatalytic regulation of 18SrRNA methyltransferase DIMT1 in acute myeloid leukemiaPreprint

Gonskikh, Y., Stoute, J., Shen, H., Budinich, K. A., Pingul, B. Y., Schultz, K. C., Elashal, H. E., Marmorstein, R., Shi, J., & Liu, K. F. (2023) · Genes & Development · doi:10.1101/gad.350298.122 · Cited by 3

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Holvec, S., Barchet, C., Lechner, A., Fréchin, L., Silva, S. N. T. D., Hazemann, I., Wolff, P., von Loeffelholz, O., & Klaholz, B. P. (2023) · Worldwide Protein Data Bank · doi:10.2210/pdb8qoi/pdb · Cited by 3

New ZNHIT3 Variants Disrupting snoRNP Assembly Cause Prenatal PEHO Syndrome with Isolated HydropsPreprint

Rahman, M. L., Bonnard, A. A., Wang, F., Ruaud, L., Guimiot, F., Li, Y., Defer, I., Wang, Y., Marchand, V., Motorin, Y., et al. (2024) · medRxiv · doi:10.1101/2024.08.26.24312490 · Cited by 3

Quantitative RNA pseudouridine landscape reveals dynamic modification patterns and evolutionary conservation across bacterial speciesPreprint

Xu, L., Shen, S., Zhang, Y., Guo, Z., Lu, B., Huang, J., Li, R., Shen, Y., Zhang, L., & Deng, X. (2025) · eLife · doi:10.7554/elife.107545 · Cited by 3

In Vitro Selection of Deoxyribozymes for the Detection of RNA Modifications

Liaqat, A., Sednev, M. V., & Höbartner, C. (2022) · Methods in molecular biology · doi:10.1007/978-1-0716-2501-9_10 · Cited by 2

In silico characterization and identification of compound heterozygous variants in H/ACA Ribonucleoprotein Assembly Factor (SHQ1) from Indian population

Gowda, V. K., Srinivasan, V. M., Srivastava, S., Ghali, N., Kinhal, U. V., Shamnur, A., & Srivastava, A. (2024) · Journal of Family Medicine and Primary Care · doi:10.4103/jfmpc.jfmpc_979_23 · Cited by 2

Quantitative RNA pseudouridine landscape reveals dynamic modification patterns and evolutionary conservation across bacterial species

Xu, L., Shen, S., Zhang, Y., Guo, Z., Lu, B., Huang, J., Li, R., Shen, Y., Zhang, L., & Deng, X. (2026) · eLife · doi:10.7554/elife.107545.3 · Cited by 2

Mechanisms of ribosomopathy and phase separation-related ribosomopathy

Pan, Z., Lin, G., Liu, H., Li, G., Zhang, X., & Dai, J. (2025) · Journal of Zhejiang University SCIENCE B · doi:10.1631/jzus.b2300904 · Cited by 3

Systematic mapping of small nucleolar RNA interactions in human cells

Dunn-Davies, H., Dudnakova, T., Langhendries, J.-L., Watkins, N. J., Lafontaine, D. L. J., & Tollervey, D. W. (2025) · RNA Biology · doi:10.1080/15476286.2025.2589573 · Cited by 2

Dual RPA-CRISPR/Cas13a parallel detection of serum cell-free RNA and internal SDK1 m7G for diagnosis of early colorectal cancer metastasis

Wu, C., Zhang, J., Wu, H., Jiang, M., Cui, J., Huang, L., Zeng, X., Lan, Y., Xiao, H., Zhou, T., et al. (2025) · Sensors and Actuators B Chemical · doi:10.1016/j.snb.2025.139236 · Cited by 2

Evaluation of Dorado v5.2.0 de novo basecalling models for the detection of tRNA modifications using RNA004 chemistry

Patel, B. I., Hauth, F., Sun, Y., & Ehrenhofer‐Murray, A. E. (2026) · BMC Genomics · doi:10.1186/s12864-026-12893-7 · Cited by 2

Fibrillarin: bridging ribosome biogenesis and apoptosis in cellular stress and disease

Zhang, Z., Zhang, M., Cao, Z., Zhao, H., Li, X., & Luo, P. (2026) · APOPTOSIS · doi:10.1007/s10495-025-02220-y · Cited by 3

Ψ-Atlas: An Integrated Atlas for Pseudouridine Epitranscriptome

Wang, X., Luo, J., Lang, X., Ling, Y., Zhou, Y., Liu, G., Chen, X., Chen, Y., Zhou, Y., Cao, Y., et al. (2026) · Genomics Proteomics & Bioinformatics · doi:10.1093/gpbjnl/qzag004 · Cited by 2

G-patch proteins: important regulators of pre-mRNA splicing and ribosome biogenesis

Karika, L. O., Čipáková, I., Hronská, L., & Čipák, L. (2026) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2026.1750689 · Cited by 2

2′-O-methylation-dependent installation of N2-methylguanosine in the U6 internal stem loop facilitates efficient spliceosome assembly

Kleiber, N., Petrosyan, J., Greve, M., Thomé, C. C., Dybkov, O., Tay, L. L. E., Welp, L. M., Hackert, P., Touboul, D., Stark, H., et al. (2026) · Nature Communications · doi:10.1038/s41467-026-72355-2 · Cited by 2

Inhibitors of ribosome biogenesis in prokaryotes and eukaryotes

Baweja, S., & Subudhi, P. D. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-816364-1.00004-4 · Cited by 2

Ribosome cycle—Assembly, degradation, and recycling

Tyagi, P., & Kumar, V. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-816364-1.00005-6 · Cited by 2

SpBLRSR: Schatten p-norm Constrained Bounded Low-rank Subspace Recovery for Predicting N7-methylguanosine (m7G)-disease Associations

Ma, J., Zhang, L., Chen, X., & Liu, H. (2022) · Current Bioinformatics · doi:10.2174/1574893617666220617122848 · Cited by 2

Ribosome RNA modification in cancer: Biological functions and therapeutic targets

Yang, X., Tao, L., Zhou, J., Zhang, K., & Wang, H. (2024) · 中国科学通报：英文版 · doi:10.1016/j.scib.2024.01.013 · Cited by 2

Genome alteration of Leishmania orientalis under Amphotericin B inhibiting conditions

Anuntasomboon, P., Siripattanapipong, S., Unajak, S., Choowongkomon, K., Burchmore, R., Leelayoova, S., Mungthin, M., & E-kobon, T. (2024) · PLoS neglected tropical diseases · doi:10.1371/journal.pntd.0012716 · Cited by 2

Built differently or defective: can RNA exosomopathies cause ribosome heterogeneity?

Bressman, Z. J., Corbett, A. H., & Ghalei, H. (2025) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2023.0382 · Cited by 2

The zebrafish ( Danio rerio ) snoRNAome

Hamar, R., & Varga, M. (2025) · NAR Genomics and Bioinformatics · doi:10.1093/nargab/lqaf013 · Cited by 1

Multi-epiomics and Crop Improvement for Sustainable Agriculture

Miglani, G. S., & Kaur, M. P. (2025) · Sustainable landscape planning and natural resources management · doi:10.1007/978-3-031-81639-0_3 · Cited by 2

Deciphering the Role of the Non-Coding Genome in Regulating Gene-Diet Interactions

Law, P. P., & Holland, M. L. (2018) · Nutrients · doi:10.3390/nu10121831 · Cited by 3

Huaier Effects on Functional Compensation with Destructive Ribosomal RNA Structure after Anti-SARS-CoV-2 mRNA Vaccination

Tanaka, M., Tanaka, T., Zhu, X., Teng, F., Lin, H., Luo, Z., Pan, Y. H., Sadahiro, S., Suzuki, T., Maeda, Y., et al. (2022) · Archives of Clinical and Biomedical Research · doi:10.26502/acbr.50170267 · Cited by 1

Ribosome biogenesis and ribosome therapy in cancer cells

Temaj, G., Hadžiselimović, R., Nefić, H., & Nuhii, N. (2022) · Research Results in Pharmacology · doi:10.3897/rrpharmacology.8.81706 · Cited by 2

Growing prospects of RNA therapeutics: A case of METTL5 and 18S rRNA m6A modification

Shinde, H., & Kadam, U. S. (2023) · Molecular Therapy · doi:10.1016/j.ymthe.2023.12.005 · Cited by 2

Distinct effects of CDK8 module subunits on cellular growth and proliferation in Drosophila

Li, X., Liu, M., Xing, Y., Niu, Y., Liu, T.-H., Sun, J. L., Liu, Y., Hemba-Waduge, R.-U.-S., & Ji, J. (2024) · Development · doi:10.1242/dev.203111 · Cited by 2

Deciphering RNA Methylation in Cancer

Barros‐Silva, D., Martens‐Uzunova, E. S., & Jerónimo, C. (2021) · RNA technologies · doi:10.1007/978-3-030-71612-7_9 · Cited by 2

Ribosomal RNA methylation by GidB modulates discrimination of mischarged tRNAPreprint

Bi, Z., Chen, Y., Young, I. D., Dandan, M. T., Joshi, H., Su, H.-W., Chen, Y., Hong, J.-Y., Fraser, J. S., & Javid, B. (2021) · eLife · doi:10.1101/2021.03.02.433644 · Cited by 1

The ubiquitin-proteasome system regulates the formation of specialized ribosomes during high salt stress in yeastPreprint

Yang, Y.-M., & Karbstein, K. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.08.15.608112 · Cited by 2

Simultaneous detection of RNA modifications using In Vitro Transcription and Direct RNA Nanopore sequencingPreprint

Mulroney, L., Tarrero, L. C., Maragno, P., Rubolino, C., Maestri, S., Furlan, M., Marzi, M. J., Fitzgerald, T. W., Leonardi, T., Pelizzola, M., et al. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.10.22.619587 · Cited by 2

A late cytoplasmic surveillance pathway ensures ribosome integrityPreprint

Chitale, R., Guan, K., Rao, S. J., Wang, C., Cenik, C., Taylor, D. W., & Johnson, A. M. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.10.29.685433 · Cited by 2

Ribosome Biogenesis as a Putative Bottleneck to Skeletal Muscle Hypertrophy: Mechanisms, Human Evidence, and Practical Modulators

Muñoz López, M., López-Gil, J. F., Ramírez de la piscina Viúdez, X., Baz-Valle, E., & Tornero Aguilera, J. F. (2026) · Cells · doi:10.3390/cells15111041 · Cited by 1

The novel pre-rRNA detection workflow “Riboprobing” allows simple identification of undescribed RNA species.

Gerhalter, M., Kofler, L., Zisser, G., Merl‐Pham, J., Hauck, S. M., & Bergler, H. (2024) · RNA · doi:10.1261/rna.079912.123 · Cited by 1

Epitranscriptomics in the Glioma Context: A Brief Overview

Santamarina‐Ojeda, P., Fernández, A. F., & Fraga, M. F. (2025) · Cancers · doi:10.3390/cancers17040578 · Cited by 1

Inconsistencies in the published rabbit ribosomal rRNAs: a proposal for uniformity in sequence and site numbering

De, S., Zhou, M., Brown, Z. P., Burton‐Smith, R. N., Hashem, Y., Pestova, T. V., Hellen, C. U. T., & Frank, J. (2025) · RNA · doi:10.1261/rna.080294.124 · Cited by 1

Global analysis of excitotoxicity-induced alterations in RNA structure and RNA-protein binding in neurons

Alvarez-Periel, E., Kramer, M. C., Akay, C., Jackson, D. P., Tasca, J. A., Garcia, B. A., Gregory, B. D., & Jordan‐Sciutto, K. L. (2025) · iScience · doi:10.1016/j.isci.2025.112595 · Cited by 1

Epigenetic Mechanisms Shaping Spine Regulation: Unveiling the Role of Cytoskeletal Dynamics and Localized Protein Synthesis

Gupta, S., Kishore, A., Rishi, V., & Aggarwal, A. (2025) · Molecular Neurobiology · doi:10.1007/s12035-025-05045-7 · Cited by 1

Photoaffinity SAM analogues for the identification of SAM-binding proteins

Wu, X., & Dong, M. (2025) · Chemical Science · doi:10.1039/d5sc03424h · Cited by 1

Transcriptome-Based Phylogenomics and Adaptive Divergence Across Environmental Gradients in Epimedium brevicornu

Lu, S., Qi, J., Zhao, J., Song, Q., Xing, L., Du, W., Wang, X., Zhang, X., & Zhou, X. (2025) · Agronomy · doi:10.3390/agronomy15092139 · Cited by 1

Archaeal RNA processing and regulation: expanding the functional landscape

Liang, Y., Qi, W., Dong, X., & Li, J. (2025) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00318-24 · Cited by 1

Locus-specific quantification reveals dynamics of ribosomal ac4C modifications

Qin, N., Wang, Y., Yuan, Q., Chen, L., & Qu, G.-S. (2026) · New Biotechnology · doi:10.1016/j.nbt.2026.01.003 · Cited by 1

The ribosomal landscape in influenza A virus infection: from molecular mechanisms to clinical relevance

Pott, J., Kryvenko, V., & Vadász, I. (2026) · European Respiratory Review · doi:10.1183/16000617.0049-2025 · Cited by 3

Comprehensive Analysis of N7-Methylguanosine-Modified Long Non-Coding RNAs Identifies DPY19L1P1 as a Key Oncogenic Effector in Oral Squamous Cell Carcinoma

Liang, K., Gong, H., Bian, S., Xu, H., Zang, R., Hao, J., Wang, Y., Zhang, Y., & Jiang, Y. (2026) · Frontiers in Bioscience-Landmark · doi:10.31083/fbl48929 · Cited by 1

Mitochondrial translation elongation controls OXPHOS biogenesis by coordinating synthesis and folding of mitochondrially encoded proteins

Xie, L., Ren, S., Zhang, L., Wang, Z., Wu, T., Dai, Q., Xiang, S., Qian, Z., Xian, Y., Xu, S., et al. (2026) · Molecular Cell · doi:10.1016/j.molcel.2026.03.017 · Cited by 1

Translational hub ribosomal protein S5 promotes glioblastoma progression by affecting translation patterns.

Wang, L., Yan, A., Suo, J., Song, J.-F., Jing, Z., Ran, K., Yin, B., Hou, L., Han, W., & Peng, X.-Z. (2026) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2026.152279 · Cited by 1

From ribosomopathies to therapeutic targets: ribosomal alterations in pediatric leukemogenesis and tumorigenesis

Horochowska, M., Jakubczyk, E., & Ussowicz, M. (2026) · Frontiers in Oncology · doi:10.3389/fonc.2026.1832877 · Cited by 1

Temporal proteomic analysis reveals a three-phase adaptation strategy in Phytophthora cinnamomi during salinity stress

Vinson, L. S., Loo, T. S., Kulshreshtha, S., Dobson, R. C. J., & Meisrimler, C. (2026) · Journal of Proteomics · doi:10.1016/j.jprot.2026.105700 · Cited by 1

A small nucleolar RNA dictates the structure and function of translating ribosomes in Leishmania

Rajan, K. S., Aryal, S., Murugeshan, S., Zhu, Y., Bashan, A., Olami, M., Madmoni, H., Nobe, Y., Doniger, T., Cohen‐Chalamish, S., et al. (2026) · Nature Communications · doi:10.1038/s41467-026-75486-8 · Cited by 1

Methyltransferase RsmB chaperones E. coli ribosome assembly by orchestrating the recruitment of ribosomal proteins

Wei, Q., & Woodson, S. A. (2026) · Science Advances · doi:10.1126/sciadv.aef7741 · Cited by 1

Weaning Date for Spring Calving Cows Grazing Sandhills Range

Ciminski, L. A., Adams, D. C., Klopfenstein, T. J., Clark, D., Applegarth, A., Musgrave, J. A., & Sandberg, R. (2002) · Lincoln (University of Nebraska) · Cited by 1

Small noncoding RNAs play superior roles in maintaining hematopoietic stem cell homeostasis

Wang, H., Qian, W., Han, Y., & Qian, P. (2022) · Blood Science · doi:10.1097/bs9.0000000000000123 · Cited by 1

Human SHQ1 variants R335C and A426V lead to severe ribosome biogenesis defects when expressed in yeast

Alidou-D’Anjou, I., Patel, A., Sleiman, S., & Dragon, F. (2023) · Frontiers in Genetics · doi:10.3389/fgene.2023.1240416 · Cited by 1

Construction of high protein-producing mutant yeast strains via point and structural mutageneses and their use for carotenoid production

Yamada, R., Inoue, Y., Karitani, Y., Sakaguchi, R., Matsumoto, T., & Ogino, H. (2025) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2025.10.008 · Cited by 1

Knock-Down of a Novel snoRNA in Tetrahymena Reveals a Dual Role in 5.8S rRNA Processing and Generation of a 26S rRNA Fragment

Andersen, K. L., & Nielsen, H. (2018) · Biomolecules · doi:10.3390/biom8040128 · Cited by 1

ORIGIN OF SARS-COV-2:NATURAL O SELECTION OR ADAPTATIVE SELECTION?

Martínez, P. M. (2021) · REBIOL · doi:10.17268/rebiol.2020.40.02.14

Editorial: RNA modifications – what to read first?

Helm, M. (2017) · RNA Biology · doi:10.1080/15476286.2017.1358346 · Cited by 1

Nuclear genetic regulation of human mitochondrial RNA modificationPreprint

Ali, A. T., Idaghdour, Y., & Hodgkinson, A. (2019) · bioRxiv · doi:10.1101/666339 · Cited by 1

N1-methyladenine safeguards against aberrant RNA-protein association during proteostasis stressPreprint

Alriquet, M., Calloni, G., Martínez-Limón, A., Ponti, R. D., Hanspach, G., Hengesbach, M., Tartaglia, G. G., & Vabulas, R. M. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/667543 · Cited by 1

Ribosome Biogenesis and its Role in Cell Growth and Proliferation in the Liver

Farley‐Barnes, K. I., & Baserga, S. J. (2020) · Wiley eBooks · doi:10.1002/9781119436812.ch15 · Cited by 1

Pseudouridine-Free Ribosome Exhibits Distinct Inter-Subunit MovementsPreprint

Zhao, Y., Rai, J., Yu, H.-G., & Li, H. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.06.02.446812 · Cited by 1

Functional analyses of RNA helicases in human ribosome biogenesis

Choudhury, P. (2019) · eDiss (Georg-August-Universität Göttingen) · doi:10.53846/goediss-7708

The N-terminal methyltransferase homologs NRMT1 and NRMT2 exhibit novel regulation of activity through heterotrimer formation.

Faughn, J. (2018) · doi:10.18297/etd/3012

Pseudouridine-dependent ribosome biogenesis regulates translation of polyglutamine proteins during Drosophila oogenesisPreprint

Breznak, S. M., Peng, Y., Deng, L., Kotb, N. M., Flamholz, Z., Rapisarda, I. T., Martin, E. T., LaBarge, K. A., Fabris, D., Gavis, E. R., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.07.07.499147 · Cited by 1

Data from A Dynamic rRNA Ribomethylome Drives Stemness in Acute Myeloid Leukemia

Zhou, F., Aroua, N., Liu, Y., Rohde, C., Cheng, J., Wirth, A.-K., Fijałkowska, D., Göllner, S., Lotze, M., Yun, H., et al. (2023) · doi:10.1158/2159-8290.c.6549778.v1 · Cited by 1

Pathways of Early Evolution From the Perspectives of a Riboreplisome – The Ultimate RNA Machine of LifePreprint

Shirokikh, N. E. (2023) · Preprints.org · doi:10.20944/preprints202305.0415.v1 · Cited by 1

A sequential, RNA-derived, modified adenosine pathway safeguards cellular metabolismPreprint

Ogawa, A., Watanabe, S. P., Kawakami, T., Tsai, A. Y., Fuse, J., Araki, K., Sawa, S., Inaba, K., & Wei, F. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.05.23.595515 · Cited by 1

Unveil the Molecular Interplay between Aminoglycosides and Pseudouridine in IRES TranslationPreprint

Zhao, Y., Xu, C., Chen, X., Jin, H., & Li, H. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.09.20.614200 · Cited by 1

Loss of tRNA uridine thiolation affects mRNA translation, protein production, and sulfur-compound metabolism in ArabidopsisPreprint

Dannfald, A., Cadoudal, A., Carpentier, M., Merret, R., Rigal, Q., Vialaret, J., Attina, A., Kindermans, J., Berrissou, C., Kopřivová, A., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.09.25.678457 · Cited by 1

Quantitative RNA pseudouridine landscape reveals dynamic modification patterns and evolutionary conservation across bacterial speciesPreprint

Xu, L., Shen, S., Zhang, Y., Guo, Z., Lu, B., Huang, J., Li, R., Shen, Y., Zhang, L., & Deng, X. (2026) · eLife · doi:10.7554/elife.107545.2 · Cited by 1

Mapping the rRNA methylome reveals contributions of methyltransferases to ribosome function and antibiotic sensitivityPreprint

Hibma, J. L., Simcox, K. M., Munson, L. M., Barnes, L. E., Koutmou, K. S., & Simmons, L. A. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.05.25.727669 · Cited by 1

Characterization of RNA-modifying enzymes and their roles in diseases

Warda, A. S. (2017) · eDiss (Georg-August-Universität Göttingen) · doi:10.53846/goediss-6612

Distinguishing features of guide and substrate RNA recognition by H/ACA snoRNPs

Kelly, E. (2018)

The Drosophila Neuroblasts: A Model System For Human Ribosomopathies

Baral, S. S. (2019) · Louisiana State University · doi:10.31390/gradschool_dissertations.4859

Discovery and characterization of quadruplex remodeling proteins

McRae, E. K. S. (2019) · Mspace (University of Manitoba)

Single species RNA purification with DNA nanoswitchesPreprint

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Molecular insights into the roles of RNA helicases during large ribosomal subunit assembly

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