Cited by 727RNA modifications and cancerRNA and protein synthesis mechanismsRNA regulation and disease

The DOI matches its Crossref record; 155 of the 155 references it cites were found in a registry or an index.

Tuning the ribosome: The influence of rRNA modification on eukaryotic ribosome biogenesis and function

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Abstract

rRNAs are extensively modified during their transcription and subsequent maturation in the nucleolus, nucleus and cytoplasm. RNA modifications, which are installed either by snoRNA-guided or by stand-alone enzymes, generally stabilize the structure of the ribosome. However, they also cluster at functionally important sites of the ribosome, such as the peptidyltransferase center and the decoding site, where they facilitate efficient and accurate protein synthesis. The recent identification of sites of substoichiometric 2'-O-methylation and pseudouridylation has overturned the notion that all rRNA modifications are constitutively present on ribosomes, highlighting nucleotide modifications as an important source of ribosomal heterogeneity. While the mechanisms regulating partial modification and the functions of specialized ribosomes are largely unknown, changes in the rRNA modification pattern have been observed in response to environmental changes, during development, and in disease. This suggests that rRNA modifications may contribute to the translational control of gene expression.

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Registry

Crossref · 10.1080/15476286.2016.1259781

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Figures

Figure 1. Structures of box C/D and box H/ACA sRNP complexes. (A) Structural model of an H/ACA box sRNP from Pyrococcus furiosus (PDB 3HAY)154 A surface view of the protein components is shown and sRNA and rRNA are indicated in dark gray and red, respectively. (B) Structural model of a Sulfolobus solfataricus box C/D sRNP (PDB 3PLA)155 is shown as in A. The modified nucleotide is shown in surface view. Note, that archaeal L7Ae is an ortholog of eukaryotic Snu13 and in eukaryotes, Nop56 and Nop58 are orthologous to archaeal Nop5.
Figure 1. Structures of box C/D and box H/ACA sRNP complexes. (A) Structural model of an H/ACA box sRNP from Pyrococcus furiosus (PDB 3HAY)154 A surface view of the protein components is shown and sRNA and rRNA are indicated in dark gray and red, respectively. (B) Structural model of a Sulfolobus solfataricus box C/D sRNP (PDB 3PLA)155 is shown as in A. The modified nucleotide is shown in surface view. Note, that archaeal L7Ae is an ortholog of eukaryotic Snu13 and in eukaryotes, Nop56 and Nop58 are orthologous to archaeal Nop5.CC BY-NC-ND · PubMed Central
Figure 2. Base modifications in rRNA and the enzymes that install them. (A) Chemical structures of the 4 nucleotides and the modifications that are added in yeast rRNAs. The additional chemical groups are marked in red and the enzymes that introduce them in yeast are indicated above the arrow (yellow) and in humans below the arrow (green). (B) Three-step modification pathway for U1191 of the 18S rRNA in yeast.
Figure 2. Base modifications in rRNA and the enzymes that install them. (A) Chemical structures of the 4 nucleotides and the modifications that are added in yeast rRNAs. The additional chemical groups are marked in red and the enzymes that introduce them in yeast are indicated above the arrow (yellow) and in humans below the arrow (green). (B) Three-step modification pathway for U1191 of the 18S rRNA in yeast.CC BY-NC-ND · PubMed Central
Figure 3. Distribution of rRNA modifications on the yeast ribosome. The S. cerevisiae 80S ribosome (PBD 4V88)6 is shown – 40S in teal and 60S in gray. The positions of 2′-O-methylations (purple), pseudouridines (blue) and base modification installed by stand-alone enzymes (orange) are indicated. Three functionally important regions of the ribosome, the peptidyltransferase center (PTC), the decoding site and the intersubunit bridge eB14, are also shown in a magnified view.
Figure 3. Distribution of rRNA modifications on the yeast ribosome. The S. cerevisiae 80S ribosome (PBD 4V88)6 is shown – 40S in teal and 60S in gray. The positions of 2′-O-methylations (purple), pseudouridines (blue) and base modification installed by stand-alone enzymes (orange) are indicated. Three functionally important regions of the ribosome, the peptidyltransferase center (PTC), the decoding site and the intersubunit bridge eB14, are also shown in a magnified view.CC BY-NC-ND · PubMed Central

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Research works printed but not linked: 2

  1. Enright CA, 1996, RNA, 2, 1094
  2. 10.1016/j.cell.2015.03.052 · DOI

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Metadata

Authors
Sloan, K. E., Warda, A. S., Sharma, S., Entian, K.-D., Lafontaine, D. L. J., & Bohnsack, M. T.
Affiliations
  • Universitätsmedizin Göttingen (DE)
  • Université Libre de Bruxelles (BE)
  • Goethe University Frankfurt (DE)
Corresponding author
Bohnsack, Markus T.
Venue
RNA Biology
Published
2016-12-18
Volume
14
Issue
9
Pages
1138-1152
ISSN
  • 1547-6286 (ISSN-L)
  • 1555-8584
OpenAlex
W2557904026
Cited by
707
References
155
Citations by year
2026: 63 · 2025: 64 · 2024: 81 · 2023: 101 · 2022: 90 · 2021: 90 · 2020: 96 · 2019: 57 · 2018: 47 · 2017: 15
FWCI
3.62
Type
journal article
Language
en
Open access
Locations
  • RNA Biology (publishedVersion, cc-by-nc-nd)
  • PubMed Central (publishedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
  • Dépôt institutionnel de l'Université libre de Bruxelles (Université Libre de Bruxelles) (submittedVersion, other-oa)
  • GoeScholar The Publication Server of the Georg-August-Universität Göttingen (Georg-August-Universität Göttingen) (submittedVersion, cc-by)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA modifications and cancer
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA regulation and disease
Keywords
rRNA modification, ribosome biogenesis, 80S ribosome, 2'-O-methylation, pseudouridylation, peptidyl transferase center, decoding site, translational regulation, ribosome structure, nucleolus
MeSH terms
Acetylation, Animals, Disease Susceptibility, Eukaryotic Cells, Humans, Methylation, Ribosomes, RNA, Ribosomal, Structure-Activity Relationship, RNA, Small Nucleolar

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