The DOI matches its Crossref record; 38 of the 38 references it cites were found in a registry or an index.
The RNA-binding protein Sam68 modulates the alternative splicing of Bcl-x
Open accessAbstract
The RNA-binding protein Sam68 is involved in apoptosis, but its cellular mRNA targets and its mechanism of action remain unknown. We demonstrate that Sam68 binds the mRNA for Bcl-x and affects its alternative splicing. Depletion of Sam68 by RNA interference caused accumulation of antiapoptotic Bcl-x(L), whereas its up-regulation increased the levels of proapoptotic Bcl-x(s). Tyrosine phosphorylation of Sam68 by Fyn inverted this effect and favored the Bcl-x(L) splice site selection. A point mutation in the RNA-binding domain of Sam68 influenced its splicing activity and subnuclear localization. Moreover, coexpression of ASF/SF2 with Sam68, or fusion with an RS domain, counteracted Sam68 splicing activity toward Bcl-x. Finally, Sam68 interacted with heterogenous nuclear RNP (hnRNP) A1, and depletion of hnRNP A1 or mutations that impair this interaction attenuated Bcl-x(s) splicing. Our results indicate that Sam68 plays a role in the regulation of Bcl-x alternative splicing and that tyrosine phosphorylation of Sam68 by Src-like kinases can switch its role from proapoptotic to antiapoptotic in live cells.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
bcl-x, a bcl-2-related gene that functions as a dominant regulator of apoptotic cell death
Boise, L. H., González-García, M., Postema, C. E., Ding, L., Lindsten, T., Turka, L. A., Mao, X., Nuñez, G., & Thompson, C. B. (1993) · Cell · doi:10.1016/0092-8674(93)90508-n · Cited by 3,087
Mechanisms of Alternative Pre-Messenger RNA Splicing
Black, D. L. (2003) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.72.121801.161720 · Cited by 2,704
Understanding alternative splicing: towards a cellular code
Matlin, A. J., Clark, F., & Smith, C. W. J. (2005) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1645 · Cited by 1,305
Role of Src expression and activation in human cancer
Irby, R. B., & Yeatman, T. J. (2000) · Oncogene · doi:10.1038/sj.onc.1203912 · Cited by 857
Alternative pre-mRNA splicing and proteome expansion in metazoans
Maniatis, T., & Tasic, B. (2002) · Nature · doi:10.1038/418236a · Cited by 768
Regulation of Apoptosis by Alternative Pre-mRNA Splicing
Schwerk, C., & Schulze-Osthoff, K. (2005) · Molecular Cell · doi:10.1016/j.molcel.2005.05.026 · Cited by 594
The human SWI/SNF subunit Brm is a regulator of alternative splicing
Batsché, E., Yaniv, M., & Muchardt, C. (2006) · Nature Structural & Molecular Biology · doi:10.1038/nsmb1030 · Cited by 471
Signal-dependent regulation of splicing via phosphorylation of Sam68
Matter, N., Herrlich, P., & König, H. (2002) · Nature · doi:10.1038/nature01153 · Cited by 458
An RNA-binding protein associated with Src through its SH2 and SH3 domains in mitosis
Taylor, S. J., & Shalloway, D. (1994) · Nature · doi:10.1038/368867a0 · Cited by 411
Fumagalli, S., Totty, N. F., Hsuan, J. J., & Courtneidge, S. A. (1994) · Nature · doi:10.1038/368871a0 · Cited by 363
Chalfant, C. E., Rathman, K., Pinkerman, R. L., Wood, R. E., Obeid, L. M., Ogretmen, B., & Hannun, Y. A. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m112010200 · Cited by 337
Self-citationSTAR, a gene family involved in signal transduction and activation of RNA
Vernet, C., & Artzt, K. (1997) · Trends in Genetics · doi:10.1016/s0168-9525(97)01269-9 · Cited by 301
Sam68 RNA Binding Protein Is an In Vivo Substrate for Protein Arginine N -Methyltransferase 1
Côté, J., Boisvert, F.-M., Boulanger, M.-C., Bedford, M. T., & Richard, S. (2003) · Molecular Biology of the Cell · doi:10.1091/mbc.e02-08-0484 · Cited by 250
Jones, A. R., & Schedl, T. (1995) · Genes & Development · doi:10.1101/gad.9.12.1491 · Cited by 245
Sam68, the KH domain-containing superSTAR
Lukong, K. E., & Richard, S. (2003) · Biochimica et Biophysica Acta (BBA) - Reviews on Cancer · doi:10.1016/j.bbcan.2003.09.001 · Cited by 240
Building specificity with nonspecific RNA-binding proteins
Singh, R., & Valcárcel, J. (2005) · Nature Structural & Molecular Biology · doi:10.1038/nsmb961 · Cited by 222
Garneau, D., Revil, T., Fisette, J.-F., & Chabot, B. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m501070200 · Cited by 218
Translational Repression of C. elegans p53 by GLD-1 Regulates DNA Damage-Induced Apoptosis
Schumacher, B., Hanazawa, M., Lee, M.-H., Nayak, S., Volkmann, K., Hofmann, R., Hengartner, M., Schedl, T., & Gartner, A. (2005) · Cell · doi:10.1016/j.cell.2004.12.009 · Cited by 214
Olopade, O. I., Adeyanju, M., Safa, A. R., Hagos, F., Mick, R., Thompson, C. B., & Recant, W. M. (1997) · PubMed · Cited by 203
Regulation of CD44 Alternative Splicing by SRm160 and Its Potential Role in Tumor Cell Invasion
Cheng, C., & Sharp, P. A. (2006) · Molecular and Cellular Biology · doi:10.1128/mcb.26.1.362-370.2006 · Cited by 201
Eperon, I. C., Makarova, O. V., Mayeda, A., Munroe, S. H., Cáceres, J. F., Hayward, D. G., & Krainer, A. R. (2000) · Molecular and Cellular Biology · doi:10.1128/mcb.20.22.8303-8318.2000 · Cited by 201
Mercatante, D. R., Mohler, J. L., & Kole, R. (2002) · Journal of Biological Chemistry · doi:10.1074/jbc.m209236200 · Cited by 174
Specificity and Determinants of Sam68 RNA Binding
Lin, Q., Taylor, S. J., & Shalloway, D. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.43.27274 · Cited by 174
A Role for the GSG Domain in Localizing Sam68 to Novel Nuclear Structures in Cancer Cell Lines
Chen, T., Boisvert, F., Bazett‐Jones, D. P., & Richard, S. (1999) · Molecular Biology of the Cell · doi:10.1091/mbc.10.9.3015 · Cited by 155
p62 Association with RNA Is Regulated by Tyrosine Phosphorylation
Wang, L. L., Richard, S., & Shaw, A. S. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.5.2010 · Cited by 150
Lukong, K. E., Larocque, D., Tyner, A. L., & Richard, S. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m505802200 · Cited by 145
Li, X., Wang, J., & Manley, J. L. (2005) · Genes & Development · doi:10.1101/gad.1359305 · Cited by 145
Wu, J. I., Zhou, L., Tonissen, K. F., Tee, R., & Artzt, K. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.41.29202 · Cited by 138
Tr‐kit‐induced resumption of the cell cycle in mouse eggs requires activation of a Src‐like kinase
Sette, C., Paronetto, M. P., Barchi, M., Bevilacqua, A., Geremia, R., & Rossi, P. (2002) · The EMBO Journal · doi:10.1093/emboj/cdf553 · Cited by 135
Self-citationStructural and functional diversity generated by alternative mRNA splicing
Stetefeld, J., & Rüegg, M. A. (2005) · Trends in Biochemical Sciences · doi:10.1016/j.tibs.2005.07.001 · Cited by 117
Sette, C., Bevilacqua, A., Geremia, R., & Rossi, P. (1998) · The Journal of Cell Biology · doi:10.1083/jcb.142.4.1063 · Cited by 112
Self-citationSam68 exerts separable effects on cell cycle progression and apoptosis
Taylor, S. J., Resnick, R. J., & Shalloway, D. I. (2004) · BMC Cell Biology · doi:10.1186/1471-2121-5-5 · Cited by 93
Babić, I., Cherry, E., & Fujita, D. J. (2006) · Oncogene · doi:10.1038/sj.onc.1209504 · Cited by 89
Massiello, A., Roesser, J. R., Chalfant, C. E., et al. (2006) · The FASEB Journal · doi:10.1096/fj.05-5021fje · Cited by 88
Self-citationParonetto, M. P., Farini, D., Sammarco, I., Maturo, G., Vespasiani, G., Geremia, R., Rossi, P., & Sette, C. (2004) · American Journal Of Pathology · doi:10.1016/s0002-9440(10)63212-9 · Cited by 85
Self-citationParonetto, M. P., Zalfa, F., Botti, F., Geremia, R., Bagni, C., & Sette, C. (2005) · Molecular Biology of the Cell · doi:10.1091/mbc.e05-06-0548 · Cited by 77
Self-citationtr-kit promotes the formation of a multimolecular complex composed by Fyn, PLCγ1 and Sam68
Paronetto, M. P., Venables, J. P., Elliott, D. J., Geremia, R., Rossi, P., & Sette, C. (2003) · Oncogene · doi:10.1038/sj.onc.1207016 · Cited by 71
Self-citationCross-talk between Signaling Pathways Regulates AlternativeSplicing
Pelisch, F., Blaustein, M., Kornblihtt, A. R., & Srebrow, A. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m412007200 · Cited by 35
Cited by
A large-scale binding and functional map of human RNA-binding proteins
Van Nostrand, E. L., Freese, P., Pratt, G. A., Wang, X., Wei, X., Xiao, R., Blue, S. M., Chen, J.-Y., Cody, N. A. L., Dominguez, D., et al. (2020) · Nature · doi:10.1038/s41586-020-2077-3 · Cited by 1,317
Mechanisms of alternative splicing regulation: insights from molecular and genomics approaches
Chen, M., & Manley, J. L. (2009) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2777 · Cited by 1,284
RNA-Binding Proteins in Cancer: Old Players and New Actors
Pereira, B., Billaud, M., & Almeida, R. (2017) · Trends in Cancer · doi:10.1016/j.trecan.2017.05.003 · Cited by 773
RNA splicing dysregulation and the hallmarks of cancer
Bradley, R. K., & Anczuków, O. (2023) · Nature Reviews Cancer · doi:10.1038/s41568-022-00541-7 · Cited by 579
Urbanski, L. M., Leclair, N., & Anczuków, O. (2018) · WIREs RNA · doi:10.1002/wrna.1476 · Cited by 389
Metadata
- Authors
- Paronetto, M. P., Achsel, T., Massiello, A., Chalfant, C. E., & Sette, C.
- Venue
- The Journal of Cell Biology
- Publisher
- Rockefeller University Press
- Published
- 2007-03-19
- Volume
- 176
- Issue
- 7
- Pages
- 929-939
- ISSN
- 0021-9525 (ISSN-L)
- 1540-8140
- OpenAlex
- W2155432224
- Cited by
- 334
- References
- 38
- FWCI
- 9.10
- Type
- journal article
- Language
- en
- Open access
- green
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.