The DOI matches its Crossref record; 16 of the 16 references it cites were found in a registry or an index.
RDP2: recombination detection and analysis from sequence alignments
Open accessAbstract
Summary: RDP2 is a Windows 95/XP program that examines nucleotide sequence alignments and attempts to identify recombinant sequences and recombination breakpoints using 10 published recombination detection methods, including GENECONV, BOOTSCAN, MAXIMUM χ2, CHIMAERA and SISTER SCANNING. The program enables fast automated analysis of large alignments (up to 300 sequences containing 13 000 sites), and interactive exploration, management and verification of results with different recombination detection and tree drawing methods. Availability: RDP2 is available free from the RDP2 website (http://darwin.uvigo.es/rdp/rdp.html) Contact: darren@science.uct.ac.za Supplementary information: Detailed descriptions of RDP2 and the methods it implements are included in the program manual, which can be downloaded from the RDP2 website.
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Felsenstein, J. (1989) · Cladistics · Cited by 17,682
Lole, K. S., Bollinger, R. C., Paranjape, R. S., Gadkari, D., Kulkarni, S. S., Novak, N. G., Ingersoll, R., Sheppard, H. W., & Ray, S. C. (1999) · Journal of Virology · doi:10.1128/jvi.73.1.152-160.1999 · Cited by 2,695
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Smith, J. (1992) · Journal of Molecular Evolution · doi:10.1007/bf00182389 · Cited by 1,625
Possible Emergence of New Geminiviruses by Frequent Recombination
Padidam, M., Sawyer, S., & Fauquet, C. M. (1999) · Virology · doi:10.1006/viro.1999.0056 · Cited by 1,588
RDP: detection of recombination amongst aligned sequences
Martin, D., & Rybicki, E. (2000) · Bioinformatics · doi:10.1093/bioinformatics/16.6.562 · Cited by 1,532
Self-citationEvaluation of methods for detecting recombination from DNA sequences: Computer simulations
Posada, D., & Crandall, K. A. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.241370698 · Cited by 1,502
Self-citationSister-Scanning: a Monte Carlo procedure for assessing signals in recombinant sequences
Gibbs, M. J., Armstrong, J. S., & Gibbs, A. J. (2000) · Bioinformatics · doi:10.1093/bioinformatics/16.7.573 · Cited by 1,114
fastDNAml: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
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Identification of Breakpoints in Intergenotypic Recombinants of HIV Type 1 by Bootscanning
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Consequences of Recombination on Traditional Phylogenetic Analysis
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Marri, P. R., Paniscus, M., Weyand, N. J., Rendón, M. A., Calton, C. M., Hernández, D. R., Higashi, D. L., Sodergren, E., Weinstock, G. M., Rounsley, S. D., et al. (2010) · PLoS ONE · doi:10.1371/journal.pone.0011835 · Cited by 207
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Metadata
- Authors
- Martin, D. P., Williamson, C., & Posada, D.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2004-09-17
- Volume
- 21
- Issue
- 2
- Pages
- 260-262
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2143334889
- Cited by
- 963
- References
- 16
- FWCI
- 17.28
- Type
- journal article
- Language
- en
- Open access
- bronze
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