The DOI matches its Crossref record; 9 of the 9 references it cites were found in a registry or an index.
Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data
Open accessAbstract
Motivation: High-throughput sequencing (HTS) technologies have made low-cost sequencing of large numbers of samples commonplace. An explosion in the type, not just number, of sequencing experiments has also taken place including genome re-sequencing, population-scale variation detection, whole transcriptome sequencing and genome-wide analysis of protein-bound nucleic acids. Results: We present Artemis as a tool for integrated visualization and computational analysis of different types of HTS datasets in the context of a reference genome and its corresponding annotation. Availability: Artemis is freely available (under a GPL licence) for download (for MacOSX, UNIX and Windows) at the Wellcome Trust Sanger Institute websites: http://www.sanger.ac.uk/resources/software/artemis/. Contact: artemis@sanger.ac.uk; tjc@sanger.ac.uk
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Cites
The Sequence Alignment/Map format and SAMtools
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Li, H., & Durbin, R. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp324 · Cited by 58,607
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
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Mapping and quantifying mammalian transcriptomes by RNA-Seq
Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L., & Wold, B. (2008) · Nature Methods · doi:10.1038/nmeth.1226 · Cited by 13,696
A map of human genome variation from population-scale sequencing.
The 1000 Genomes Project Consortium (2010) · Nature · doi:10.1038/nature09534 · Cited by 7,877
Sequencing technologies – the next generation
Metzker, M. L. (2010) · Nature Reviews Genetics · doi:10.1038/nrg2626 · Cited by 7,066
Mouse genomic variation and its effect on phenotypes and gene regulation.
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A new highly penetrant form of obesity due to deletions on chromosome 16p11.2
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Cited by
Wang, M., Carver, J. J., Phelan, V. V., Sanchez, L. M., Garg, N., Peng, Y., Nguyen, D. D., Watrous, J., Kapono, C. A., Luzzatto-Knaan, T., et al. (2016) · Nature Biotechnology · doi:10.1038/nbt.3597 · Cited by 4,629
Quail, M., Smith, M. E., Coupland, P., Otto, T. D., Harris, S. R., Connor, T. R., Bertoni, A., Swerdlow, H. P., & Gu, Y. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-341 · Cited by 2,031
Self-citationHuman placenta has no microbiome but can contain potential pathogens
de Goffau, M. C., Lager, S., Sovio, U., Gaccioli, F., Cook, E., Peacock, S. J., Parkhill, J., Charnock-Jones, D. S., & Smith, G. C. S. (2019) · Nature · doi:10.1038/s41586-019-1451-5 · Cited by 691
Self-citationPredicting genes in single genomes with AUGUSTUS
Hoff, K. J., & Stanke, M. (2019) · Current Protocols in Bioinformatics · doi:10.1002/cpbi.57 · Cited by 421
The 5300-year-old Helicobacter pylori genome of the Iceman
Maixner, F., Krause-Kyora, B., Turaev, D., Herbig, A., Hoopmann, M. R., Hallows, J. L., Kusebauch, U., Vigl, E. E., Malfertheiner, P., Megraud, F., et al. (2016) · Science · doi:10.1126/science.aad2545 · Cited by 231
Metadata
- Authors
- Carver, T., Harris, S. R., Berriman, M., Parkhill, J., & McQuillan, J. A.
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2011-12-22
- Volume
- 28
- Issue
- 4
- Pages
- 464-469
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- OpenAlex
- W2150491437
- Cited by
- 1,216
- References
- 9
- FWCI
- 10.35
- Type
- journal article
- Language
- en
- Open access
- hybrid
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