SPLATCHE3: simulation of serial genetic data under spatially explicit evolutionary scenarios including long-distance dispersal
Open accessAbstract
Summary: SPLATCHE3 simulates genetic data under a variety of spatially explicit evolutionary scenarios, extending previous versions of the framework. The new capabilities include long-distance migration, spatially and temporally heterogeneous short-scale migrations, alternative hybridization models, simulation of serial samples of genetic data and a large variety of DNA mutation models. These implementations have been applied independently to various studies, but grouped together in the current version. Availability and implementation: SPLATCHE3 is written in C++ and is freely available for non-commercial use from the website http://www.splatche.com/splatche3. It includes console versions for Linux, MacOs and Windows and a user-friendly GUI for Windows, as well as detailed documentation and ready-to-use examples.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Excoffier, L., & Lischer, H. E. L. (2010) · Molecular Ecology Resources · doi:10.1111/j.1755-0998.2010.02847.x · Cited by 16,266 · see citing works
Self-citationEvolution of Protein Molecules
JUKES, T. H., & CANTOR, C. R. (1969) · Mammalian Protein Metabolism · doi:10.1016/b978-1-4832-3211-9.50009-7 · Cited by 11,032 · see citing works
Generating samples under a Wright–Fisher neutral model of genetic variation
Hudson, R. R. (2002) · Bioinformatics · doi:10.1093/bioinformatics/18.2.337 · Cited by 2,397 · see citing works
Robust Demographic Inference from Genomic and SNP Data
Excoffier, L., Dupanloup, I., Huerta‐Sánchez, E., Sousa, V. C., & Foll, M. (2013) · PLoS Genetics · doi:10.1371/journal.pgen.1003905 · Cited by 1,434 · see citing works
Self-citationApproximate Bayesian Computation (ABC) in practice
Csilléry, K., Blum, M. G. B., Gaggiotti, O. E., & François, O. (2010) · Trends in Ecology & Evolution · doi:10.1016/j.tree.2010.04.001 · Cited by 1,302 · see citing works
THE HIDDEN SIDE OF INVASIONS: MASSIVE INTROGRESSION BY LOCAL GENES
Currat, M., Ruedi, M., Petit, R. J., & Excoffier, L. (2008) · Evolution · doi:10.1111/j.1558-5646.2008.00413.x · Cited by 816 · see citing works
Self-citationDNA sequences from the quagga, an extinct member of the horse family
Higuchi, R., Bowman, B. H., Freiberger, M., Ryder, O. A., & Wilson, A. C. (1984) · Nature · doi:10.1038/312282a0 · Cited by 791 · see citing works
Molecular cloning of Ancient Egyptian mummy DNA
Pääbo, S. (1985) · Nature · doi:10.1038/314644a0 · Cited by 666 · see citing works
The Fate of Mutations Surfing on the Wave of a Range Expansion
Klopfstein, S., Currat, M., & Excoffier, L. (2006) · Molecular Biology and Evolution · doi:10.1093/molbev/msj057 · Cited by 641 · see citing works
Self-citationIntra-Deme Molecular Diversity in Spatially Expanding Populations
Ray, N., Currat, M., & Excoffier, L. (2003) · Molecular Biology and Evolution · doi:10.1093/molbev/msg009 · Cited by 605 · see citing works
Self-citationExcoffier, L., & Foll, M. (2011) · Bioinformatics · doi:10.1093/bioinformatics/btr124 · Cited by 468 · see citing works
Self-citationABC as a flexible framework to estimate demography over space and time: some cons, many pros
Bertorelle, G., Benazzo, A., & Mona, S. (2010) · Molecular Ecology · doi:10.1111/j.1365-294x.2010.04690.x · Cited by 465 · see citing works
EASYPOP (Version 1.7): A Computer Program for Population Genetics Simulations
Balloux, F. (2001) · Journal of Heredity · doi:10.1093/jhered/92.3.301 · Cited by 392 · see citing works
Modern Humans Did Not Admix with Neanderthals during Their Range Expansion into Europe
Currat, M., & Excoffier, L. (2004) · PLoS Biology · doi:10.1371/journal.pbio.0020421 · Cited by 376 · see citing works
Self-citationThe importance of proper model assumption in bayesian phylogenetics.
Lemmon, A. R., & Moriarty, E. C. (2004) · Systematic Biology · doi:10.1080/10635150490423520 · Cited by 356 · see citing works
Some mathematical questions in biology : DNA sequence analysis
Miura, R. M. (1986) · American Mathematical Society eBooks · Cited by 323 · see citing works
Spatial Inference of Admixture Proportions and Secondary Contact Zones
Durand, E., Jay, F., Gaggiotti, O. E., & François, O. (2009) · Molecular Biology and Evolution · doi:10.1093/molbev/msp106 · Cited by 323 · see citing works
'Stepping stone' model of population
Kimura, M. (1953) · Medical Entomology and Zoology · Cited by 285 · see citing works
Reconstructing ancient genomes and epigenomes
Orlando, L., Gilbert, M. T. P., & Willerslev, E. (2015) · Nature Reviews Genetics · doi:10.1038/nrg3935 · Cited by 279 · see citing works
Consequences of Range Contractions and Range Shifts on Molecular Diversity
Arenas, M., Ray, N., Currat, M., & Excoffier, L. (2012) · Molecular Biology and Evolution · doi:10.1093/molbev/msr187 · Cited by 236 · see citing works
Self-citationDemographic History of European Populations of Arabidopsis thaliana
François, O., Blum, M. G. B., Jakobsson, M., & Rosenberg, N. A. (2008) · PLoS Genetics · doi:10.1371/journal.pgen.1000075 · Cited by 225 · see citing works
The effect of the Neolithic expansion on European molecular diversity
Currat, M., & Excoffier, L. (2005) · Proceedings of the Royal Society B: Biological Sciences · doi:10.1098/rspb.2004.2999 · Cited by 210 · see citing works
Self-citationCurrat, M., & Excoffier, L. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1107450108 · Cited by 158 · see citing works
Self-citationWhite, T. A., Perkins, S. E., Heckel, G., & Searle, J. B. (2013) · Molecular Ecology · doi:10.1111/mec.12343 · Cited by 152 · see citing works
Evolutionary Patterns and Processes: Lessons from Ancient DNA
Leonardi, M., Librado, P., Sarkissian, C. S. I. D., Schubert, M., Alfarhan, A., Alquraishi, S. A., Al‐Rasheid, K. A. S., Gamba, C., Willerslev, E., & Orlando, L. (2016) · Systematic Biology · doi:10.1093/sysbio/syw059 · Cited by 151 · see citing works
Crandall, K. A. (1999) · Johns Hopkins University Press eBooks · doi:10.56021/9780801861505 · Cited by 149 · see citing works
Principal Component Analysis under Population Genetic Models of Range Expansion and Admixture
François, O., Currat, M., Ray, N., Han, E., Excoffier, L., & Novembre, J. (2010) · Molecular Biology and Evolution · doi:10.1093/molbev/msq010 · Cited by 149 · see citing works
Self-citationsplatche : a program to simulate genetic diversity taking into account environmental heterogeneity
Currat, M., Ray, N., & Excoffier, L. (2004) · Molecular Ecology Notes · doi:10.1046/j.1471-8286.2003.00582.x · Cited by 148 · see citing works
Self-citationCurrat, M., Excoffier, L., Maddison, W. P., Otto, S. P., Ray, N., Whitlock, M. C., & Yeaman, S. (2006) · Science · doi:10.1126/science.1122712 · Cited by 133 · see citing works
Self-citationGenetic consequences of habitat fragmentation during a range expansion
Mona, S., Ray, N., Arenas, M., & Excoffier, L. (2013) · Heredity · doi:10.1038/hdy.2013.105 · Cited by 127 · see citing works
Self-citationRay, N., Currat, M., Foll, M., & Excoffier, L. (2010) · Bioinformatics · doi:10.1093/bioinformatics/btq579 · Cited by 124 · see citing works
Self-citationRay, N., Currat, M., Berthier, P., & Excoffier, L. (2005) · Genome Research · doi:10.1101/gr.3708505 · Cited by 122 · see citing works
Self-citationSimulation and Separation by Principal Components of Multiple Demic Expansions in Europe
Rendine, S., Piazza, A., & Cavalli-Sforza, L. L. (1986) · The American Naturalist · doi:10.1086/284597 · Cited by 115 · see citing works
Indo‐European origins: A computer‐simulation test of five hypotheses
Barbujani, G., Sokal, R. R., & Oden, N. L. (1995) · American Journal of Physical Anthropology · doi:10.1002/ajpa.1330960202 · Cited by 104 · see citing works
Genetic structure of a recent climate change-driven range extension
Banks, S. C., Ling, S., Johnson, C. R., Piggott, M. P., Williamson, J. E., & Beheregaray, L. B. (2010) · Molecular Ecology · doi:10.1111/j.1365-294x.2010.04627.x · Cited by 88 · see citing works
Range expansion as an explanation for introgression in European wildcats
Nussberger, B., Currat, M., Quilodrán, C. S., Ponta, N., & Keller, L. F. (2017) · Biological Conservation · doi:10.1016/j.biocon.2017.12.009 · Cited by 83 · see citing works
Self-citationBrown, J. L., & Knowles, L. L. (2012) · Molecular Ecology · doi:10.1111/j.1365-294x.2012.05640.x · Cited by 79 · see citing works
Simulation of Molecular Data under Diverse Evolutionary Scenarios
Arenas, M. (2012) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1002495 · Cited by 62 · see citing works
Self-citationA first step towards inferring levels of long‐distance dispersal during past expansions
Ray, N., & Excoffier, L. (2010) · Molecular Ecology Resources · doi:10.1111/j.1755-0998.2010.02881.x · Cited by 57 · see citing works
Self-citationBrown, J. L., Weber, J. J., Alvarado‐Serrano, D. F., Hickerson, M. J., Franks, S. J., & Carnaval, A. C. (2016) · American Journal of Botany · doi:10.3732/ajb.1500117 · Cited by 53 · see citing works
Gehara, M., Summers, K., & Brown, J. L. (2013) · Evolutionary Ecology · doi:10.1007/s10682-013-9652-0 · Cited by 51 · see citing works
Influence of Admixture and Paleolithic Range Contractions on Current European Diversity Gradients
Arenas, M., François, O., Currat, M., Ray, N., & Excoffier, L. (2013) · Molecular Biology and Evolution · doi:10.1093/molbev/mss203 · Cited by 50 · see citing works
Self-citationSignals of recent spatial expansions in the grey mouse lemur (Microcebus murinus)
Schneider, N. A., Chikhi, L., Currat, M., & Radespiel, U. (2010) · BMC Evolutionary Biology · doi:10.1186/1471-2148-10-105 · Cited by 49 · see citing works
Self-citationLong-Distance Dispersal Shaped Patterns of Human Genetic Diversity in Eurasia
Alves, I., Arenas, M., Currat, M., Hanulová, A. Š., Sousa, V. C., Ray, N., & Excoffier, L. (2015) · Molecular Biology and Evolution · doi:10.1093/molbev/msv332 · Cited by 49 · see citing works
Self-citationGenome-Wide Heterogeneity of Nucleotide Substitution Model Fit
Arbiza, L., Patrício, M., Dopazo, H., & Posada, D. (2011) · Genome Biology and Evolution · doi:10.1093/gbe/evr080 · Cited by 40 · see citing works
Accurate Detection of Recombinant Breakpoints in Whole-Genome Alignments
Westesson, O., & Holmes, I. H. (2009) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1000318 · Cited by 39 · see citing works
Mekel-Bobrov, N., Evans, P. D., Gilbert, S. L., Vallender, E. J., Hudson, R. R., & Lahn, B. T. (2006) · Science · doi:10.1126/science.1122822 · Cited by 37 · see citing works
Lopes, J. S., Arenas, M., Posada, D., & Beaumont, M. (2013) · Heredity · doi:10.1038/hdy.2013.101 · Cited by 34 · see citing works
Self-citationLao, Ó., Altena, E., Becker, C., Brauer, S., Kraaijenbrink, T., van Oven, M., Nürnberg, P., de Knijff, P., & Kayser, M. (2013) · Investigative Genetics · doi:10.1186/2041-2223-4-9 · Cited by 25 · see citing works
Reid, B. N., Kass, J. M., Wollney, S., Jensen, E. L., Russello, M. A., Viola, E. M., Pantophlet, J., Iverson, J. B., Peery, M. Z., Raxworthy, C. J., et al. (2018) · Heredity · doi:10.1038/s41437-018-0135-5 · Cited by 17 · see citing works
Dellicour, S., Kastally, C., Hardy, O. J., & Mardulyn, P. (2014) · Molecular Biology and Evolution · doi:10.1093/molbev/msu277 · Cited by 16 · see citing works
Investigating population continuity with ancient DNA under a spatially explicit simulation framework
Silva, N. M., Rio, J., & Currat, M. (2017) · BMC Genetics · doi:10.1186/s12863-017-0575-6 · Cited by 14 · see citing works
Self-citationZhang, D. (2013) · Journal of Systematics and Evolution · doi:10.1111/jse.12066 · Cited by 13 · see citing works
Wave-of-Advance Models of the Diffusion of the Y Chromosome Haplogroup R1b1b2 in Europe
Sjödin, P., & François, O. (2011) · PLoS ONE · doi:10.1371/journal.pone.0021592 · Cited by 11 · see citing works
Silva, N. M., Rio, J., Kreutzer, S., Papageorgopoulou, C., & Currat, M. (2018) · Evolutionary Applications · doi:10.1111/eva.12655 · Cited by 11 · see citing works
Self-citationConsequences of diverse evolutionary processes on american genetic gradients of modern humans
Branco, C., Velasco, M., Benguigui, M., Currat, M., Ray, N., & Arenas, M. (2018) · Heredity · doi:10.1038/s41437-018-0122-x · Cited by 9 · see citing works
Self-citationInvestigating sex‐specific dynamics using uniparental markers: West New Guinea as a case study
Mona, S., Mordret, E., Veuille, M., & Tommaseo-Ponzetta, M. (2013) · Ecology and Evolution · doi:10.1002/ece3.660 · Cited by 6 · see citing works
Flagged first, then by citations
Research works printed but not linked: 1
- Excoffier L. et al (2014) Models of hybridization during range expansions and their application to recent human evolution In: Derevianko A.P., Shunkov M. (eds) Cultural Developments in the Eurasian Paleolithic and the Origin of Anatomically Modern Humans. Department of the Institute of Archaeology and Ethnography; SB RAS, Novosibirsk, Russia, pp. 122– 137.
Cited by
Sorted by citations
fastsimcoal2 : demographic inference under complex evolutionary scenarios
Excoffier, L., Marchi, N., Marques, D. A., Matthey‐Doret, R., Gouy, A., & Sousa, V. C. (2021) · Bioinformatics · doi:10.1093/bioinformatics/btab468 · Cited by 431 · see citing works
Self-citationThe evolutionary dynamics of biological invasions: A multi‐approach perspective
Sherpa, S., & Després, L. (2021) · Evolutionary Applications · doi:10.1111/eva.13215 · Cited by 125 · see citing works
Bourgeois, Y., & Warren, B. H. (2021) · Molecular Ecology · doi:10.1111/mec.15989 · Cited by 96 · see citing works
Pan, D., Hülber, K., Willner, W., & Schneeweiss, G. M. (2019) · Molecular Ecology · doi:10.1111/mec.15316 · Cited by 33 · see citing works
The Spatial Signature of Introgression After a Biological Invasion With Hybridization
Quilodrán, C. S., Tsoupas, A., & Currat, M. (2020) · Frontiers in Ecology and Evolution · doi:10.3389/fevo.2020.569620 · Cited by 31 · see citing works
Self-citationGuillory, W. X., Magalhães, F. D. M., Coelho, F. E. A., Bonatelli, I. A. S., Palma‐Silva, C., Moraes, E. M., Garda, A. A., Burbrink, F. T., & Gehara, M. (2024) · Molecular Ecology · doi:10.1111/mec.17431 · Cited by 30 · see citing works
Provost, K. L., Myers, E. A., & Smith, B. T. (2021) · Journal of Biogeography · doi:10.1111/jbi.14115 · Cited by 30 · see citing works
Rates and Rocks: Strengths and Weaknesses of Molecular Dating Methods
Guindon, S. (2020) · Frontiers in Genetics · doi:10.3389/fgene.2020.00526 · Cited by 28 · see citing works
Variable outcomes of hybridization between declining Alosa alosa and Alosa fallax
Taillebois, L., Sabatino, S. J., Manicki, A., Daverat, F., Nachón, D. J., & Lepais, O. (2019) · Evolutionary Applications · doi:10.1111/eva.12889 · Cited by 22 · see citing works
The Early Peopling of the Philippines based on mtDNA
Arenas, M., Gorostiza, A., Baquero, J. M., Campoy, E., Branco, C., Rangel‐Villalobos, H., & González‐Martín, A. (2020) · Scientific Reports · doi:10.1038/s41598-020-61793-7 · Cited by 22 · see citing works
Self-citationslendr: a framework for spatio-temporal population genomic simulations on geographic landscapes
Petr, M., Haller, B. C., Ralph, P. L., & Racimo, F. (2023) · Peer Community Journal · doi:10.24072/pcjournal.354 · Cited by 22 · see citing works
Projecting introgression from domestic cats into European wildcats in the Swiss Jura
Quilodrán, C. S., Nussberger, B., Macdonald, D. W., Montoya‐Burgos, J. I., & Currat, M. (2020) · Evolutionary Applications · doi:10.1111/eva.12968 · Cited by 19 · see citing works
Self-citationHarnessing paleo‐environmental modeling and genetic data to predict intraspecific genetic structure
Yannic, G., Hagen, O., Leugger, F., Karger, D. N., & Pellissier, L. (2020) · Evolutionary Applications · doi:10.1111/eva.12986 · Cited by 19 · see citing works
Ongaro, L., Molinaro, L., Flores, R., Marnetto, D., Capodiferro, M. R., Alarcón-Riquelme, M. E., Moreno‐Estrada, A., Mabunda, N. J., Ventura, M., Tambets, K., et al. (2021) · Genes · doi:10.3390/genes12101580 · Cited by 17 · see citing works
Vahdati, A. R., Weissmann, J. D., Timmermann, A., de León, M. S. P., & Zollikofer, C. P. E. (2022) · Quaternary Science Reviews · doi:10.1016/j.quascirev.2022.107391 · Cited by 18 · see citing works
Overcast, I., Achaz, G., Aguilée, R., Andújar, C., Arribas, P., Creedy, T. J., Economo, E. P., Etienne, R. S., Gillespie, R. G., Jacquet, C., et al. (2022) · Global Ecology and Biogeography · doi:10.1111/geb.13604 · Cited by 16 · see citing works
The importance of eco-evolutionary dynamics for predicting and managing insect range shifts
Wellenreuther, M., Dudaniec, R. Y., Neu, A., Lessard, J., Bridle, J. R., Carbonell, J. A., Diamond, S. E., Marshall, K. E., Parmesan, C., Singer, M. C., et al. (2022) · Current Opinion in Insect Science · doi:10.1016/j.cois.2022.100939 · Cited by 13 · see citing works
Larsson, D. J., Pan, D., & Schneeweiss, G. M. (2021) · Alpine Botany · doi:10.1007/s00035-021-00263-w · Cited by 13 · see citing works
Past human expansions shaped the spatial pattern of Neanderthal ancestry
Quilodrán, C. S., Rio, J., Tsoupas, A., & Currat, M. (2023) · Science Advances · doi:10.1126/sciadv.adg9817 · Cited by 12 · see citing works
Self-citationDispersal and habitat dynamics shape the genetic structure of the Northern chamois in the Alps
Leugger, F., Broquet, T., Karger, D. N., Rioux, D., Bužan, E., Corlatti, L., Crestanello, B., Curt‐Grand‐Gaudin, N., Hauffe, H. C., Rolečková, B., et al. (2022) · Journal of Biogeography · doi:10.1111/jbi.14363 · Cited by 10 · see citing works
Wang, Z., & Pierce, N. E. (2022) · Molecular Ecology · doi:10.1111/mec.16457 · Cited by 10 · see citing works
Consequences of diverse evolutionary processes on american genetic gradients of modern humans
Branco, C., Velasco, M., Benguigui, M., Currat, M., Ray, N., & Arenas, M. (2018) · Heredity · doi:10.1038/s41437-018-0122-x · Cited by 9 · see citing works
Self-citationThe genomic footprints of migration: how ancient DNA reveals our history of mobility
Williams, M. P., & Huber, C. D. (2025) · Genome biology · doi:10.1186/s13059-025-03664-w · Cited by 8 · see citing works
Evaluating Causes of Current Genetic Gradients of Modern Humans of the Iberian Peninsula
Ferreiro, D., Núñez-Estévez, B., Canedo, M., Branco, C., & Arenas, M. (2021) · Genome Biology and Evolution · doi:10.1093/gbe/evab071 · Cited by 7 · see citing works
Self-citationRio, J., Quilodrán, C. S., & Currat, M. (2021) · Communications Biology · doi:10.1038/s42003-021-02670-5 · Cited by 7 · see citing works
Self-citationMiller, E. F., Leonardi, M., Xue, Z., Beyer, R. M., Krapp, M., Somveille, M., Somma, G. L., Delser, P. M., & Manica, A. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.05.10.443405 · Cited by 7 · see citing works
Genetic surfing during the range expansion of an endangered large carnivore
Tensen, L., Currat, M., Davies‐Mostert, H. T., du Plessis, C., & Fischer, K. (2023) · Biodiversity and Conservation · doi:10.1007/s10531-023-02755-z · Cited by 5 · see citing works
Self-citationLegacy of supervolcanic eruptions on population genetic structure of brown kiwi
Bemmels, J. B., Haddrath, O., Colbourne, R. M., Robertson, H. A., & Weir, J. T. (2022) · Current Biology · doi:10.1016/j.cub.2022.05.064 · Cited by 5 · see citing works
Gradual Distance Dispersal Shapes the Genetic Structure in an Alpine Grasshopper
Illera, J. C., Arenas, M., López-Sánchez, C. A., Obeso, J. R., & Laiolo, P. (2019) · Genes · doi:10.3390/genes10080590 · Cited by 5 · see citing works
Self-citationConsequences of the Last Glacial Period on the Genetic Diversity of Southeast Asians
Branco, C., Kanellou, M., González‐Martín, A., & Arenas, M. (2022) · Genes · doi:10.3390/genes13020384 · Cited by 4 · see citing works
Self-citationSzép, E., Trubenová, B., & Csilléry, K. (2022) · Molecular Ecology Resources · doi:10.1111/1755-0998.13676 · Cited by 5 · see citing works
Branco, C., Ray, N., Currat, M., & Arenas, M. (2020) · Molecular Ecology · doi:10.1111/mec.15479 · Cited by 5 · see citing works
Self-citationParedes‐Montero, J. R., Rizental, M. S., Quintela, E. D., de Abreu, A. G., & Brown, J. K. (2022) · Ecology and Evolution · doi:10.1002/ece3.8557 · Cited by 5 · see citing works
Tsoupas, A., Reyna-Blanco, C. S., Quilodrán, C. S., Blöcher, J., Brami, M., Wegmann, D., Bürger, J., & Currat, M. (2025) · Science Advances · doi:10.1126/sciadv.adq9976 · Cited by 4 · see citing works
Self-citationVishwakarma, R., Sgarlata, G. M., Soriano‐Paños, D., Rasteiro, R., Maié, T., Paixão, T., Tournebize, R., & Chikhi, L. (2024) · Molecular Ecology · doi:10.1111/mec.17597 · Cited by 4 · see citing works
Inferring the Demographic History and Inheritance Mode of Tetraploid Species Using ABC
Roux, C., Vekemans, X., & Pannell, J. R. (2023) · Methods in molecular biology · doi:10.1007/978-1-0716-2561-3_17 · Cited by 3 · see citing works
Broccard, N., Silva, N. M., & Currat, M. (2021) · American Journal of Biological Anthropology · doi:10.1002/ajpa.24431 · Cited by 1 · see citing works
Self-citationOn the genetic consequences of habitat contraction: edge effects and habitat lossPreprint
Sgarlata, G. M., Maié, T., de Zoeten, T., Rasteiro, R., & Chikhi, L. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.10.25.513679 · Cited by 2 · see citing works
EvoDynamics.jl: a framework for modeling eco-evolutionary dynamics
Vahdati, A. R., & Melián, C. J. (2022) · The Journal of Open Source Software · doi:10.21105/joss.04775 · Cited by 1 · see citing works
A new powerful tool to easily encode the geo-spatial dimension in population genetics simulations
Trucchi, E. (2023) · Peer Community in Evolutionary Biology · doi:10.24072/pci.evolbiol.100630 · Cited by 1 · see citing works
Inferring the demographic history of tetraploid species from genomic dataPreprint
Roux, C., Vekemans, X., & Pannell, J. R. (2021) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2021.07.10.451876 · Cited by 1 · see citing works
Modeling the Past: 30 Years Later
Nasevich, V. (2021) · Историческая информатика · doi:10.7256/2585-7797.2021.4.36733
Microbial Sequence Typing Strategies for Genetic and Genomic Data
Pérez‐Losada, M., Castro‐Nallar, E., & Arenas, M. (2024) · Elsevier eBooks · doi:10.1016/b978-0-443-28818-0.00023-9
Self-citationElevational Range Impacts Connectivity and Predicted Deme Sizes From Models of Habitat Suitability
French, C. M., Damasceno, R. P., Vasconcellos, M. M., Rodrigues, M. T., Carnaval, A. C., & Hickerson, M. J. (2024) · Molecular Ecology · doi:10.1111/mec.17593
Likelihood of social-ecological genetic modelPreprint
Dupas, S., & Patarroyo, C. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.03.06.641298
Tracing Neanderthal ancestry patterns through successive population expansions in EuropePreprint
Tsoupas, A., Quilodrán, C. S., Rio, J., & Currat, M. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.02.20.706963
Self-citationCarmelet‐Rescan, D., Trewick, S. A., Bridger, C., Pohe, S. R., Morgan‐Richards, M., & Vaux, F. (2026) · Freshwater Biology · doi:10.1111/fwb.70300
- Authors
- Currat, M., Arenas, M., Quilodràn, C. S., Excoffier, L., & Ray, N.
- Affiliations
- University of Geneva (CH)
- Universidade de Vigo (ES)
- Laboratory of Anthropology, Genetics and Peopling History, Department of Genetics and Evolution – Anthropology Unit, University of Geneva , Geneva 1205, Switzerland
- University of Bern (CH)
- Corresponding author
- Currat, Mathias
- Venue
- Bioinformatics
- Publisher
- Oxford University Press (OUP)
- Published
- 2019-05-11
- Volume
- 35
- Issue
- 21
- Pages
- 4480-4483
- ISSN
- 1367-4803 (ISSN-L)
- 1367-4811
- PMC
- PMC6821363
- OpenAlex
- W2944069861
- Cited by
- 47
- References
- 57
- Citations by year
- 2026: 2 · 2025: 3 · 2024: 4 · 2023: 5 · 2022: 11 · 2021: 12 · 2020: 6 · 2019: 3 · 2018: 1
- FWCI
- 4.81
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Bioinformatics (publishedVersion, cc-by-nc)
- PubMed Central (publishedVersion, cc-by-nc)
- PubMed (publishedVersion)
- Archive ouverte UNIGE (University of Geneva) (publishedVersion, other-oa)
- Bern Open Repository and Information System (University of Bern) (submittedVersion, cc-by-nc)
- Investigo repository of University of Vigo (University of Vigo) (submittedVersion, other-oa)
- Archive ouverte UNIGE (University of Geneva) (submittedVersion, cc-by-nc)
- Investigo Institutional repository of UVigo (Universidade de Vigo) (submittedVersion, cc-by-nc)
- Open Access CRIS of the University of Bern
- Funders
- Swiss National Science Foundation (31003A_156853, 31003A_182577)
- Spanish Government (RYC-2015-18241, ED431F 2018/08)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic diversity and population structure
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Forensic and Genetic Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Evolution and Genetic Dynamics
- Keywords
- population genetics simulation, spatially explicit population model, long-distance dispersal, migration, hybridization model, population genetics software
- MeSH terms
- Computer Simulation, Biological Evolution, Software
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
