Cited by 7Forensic and Genetic ResearchGenetic diversity and population structureAncient and Medieval Archaeology Studies

Spatially explicit paleogenomic simulations support cohabitation with limited admixture between Bronze Age Central European populations

Open access
Rio, Jérémy, Quilodrán, Claudio S., Currat, Mathias·2021·Communications Biology

Abstract

The Bronze Age is a complex period of social, cultural and economic changes. Recent paleogenomic studies have documented a large and rapid genetic change in early Bronze Age populations from Central Europe. However, the detailed demographic and genetic processes involved in this change are still debated. Here we have used spatially explicit simulations of genomic components to better characterize the demographic and migratory conditions that may have led to this change. We investigated various scenarios representing the expansion of pastoralists from the Pontic steppe, potentially linked to the Yamnaya cultural complex, and their interactions with local populations in Central Europe, considering various eco-evolutionary factors, such as population admixture, competition and long-distance dispersal. Our results do not support direct competition but rather the cohabitation of pastoralists and farmers in Central Europe, with limited gene flow between populations. They also suggest occasional long-distance migrations accompanying the expansion of pastoralists and a demographic decline in both populations following their initial contact. These results link recent archaeological and paleogenomic observations and move further the debate of genomic changes during the early Bronze Age.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1038/s42003-021-02670-5

Cites

10 of 10 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • During the Bronze Age, pastoralist populations from Eurasian steppes spread.

    “This includes the European Neolithic transition, when farmers coming from southeast Europe and Anatolia partially replaced hunter-gatherers (32–35), as well as the Bronze Age, with the spread of pastoralist populations from Eurasian steppes (36–38).”

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 60

  1. [2]Skoglund P Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe Science 2012 336 466 469 10.1126/science.1216304 22539720 · DOI
  2. [3]Ammerman, A. J. & Cavalli-Sforza, L. L. The Neolithic Transition and the Genetics of Populations in Europe: (Princeton University Press, 1984). 10.1515/9781400853113. · DOI
  3. [5]Rasteiro R Bouttier P-A Sousa VC Chikhi L Investigating sex-biased migration during the Neolithic transition in Europe, using an explicit spatial simulation framework Proc. R. Soc. B Biol. Sci. 2012 279 2409 2416 10.1098/rspb.2011.2323 PMC3350666 22298848 · DOI
  4. [6]Olalde I The Beaker phenomenon and the genomic transformation of northwest Europe Nature 2018 555 190 196 10.1038/nature25738 29466337 PMC5973796 · DOI
  5. [7]Martiniano R The population genomics of archaeological transition in west Iberia: Investigation of ancient substructure using imputation and haplotype-based methods PLOS Genet 2017 13 e1006852 10.1371/journal.pgen.1006852 28749934 PMC5531429 · DOI
  6. [8]Olalde I The genomic history of the Iberian Peninsula over the past 8000 years Science 2019 363 1230 1234 10.1126/science.aav4040 30872528 PMC6436108 · DOI · Paper page
  7. [12]Haak W Massive migration from the steppe was a source for Indo-European languages in Europe Nature 2015 522 207 211 10.1038/nature14317 25731166 PMC5048219 · DOI · Paper page
  8. [14]Narasimhan VM The formation of human populations in South and Central Asia Science 2019 365 eaat7487 10.1126/science.aat7487 31488661 PMC6822619 · DOI
  9. [15]Kristiansen K Prehistoric migrations—the case of the single grave and corded ware cultures J. Dan. Archaeol. 1989 8 211 225 10.1080/0108464X.1989.10590029 · DOI
  10. [16]Heyd V Kossinna’s smile Antiquity 2017 91 348 359 10.15184/aqy.2017.21 · DOI
  11. [17]Kristiansen K Re-theorising mobility and the formation of culture and language among the Corded Ware Culture in Europe Antiquity 2017 91 334 347 10.15184/aqy.2017.17 · DOI
  12. [18]Klejn LS The steppe hypothesis of indo-european origins remains to be proven Acta Archaeol. 2017 88 193 204 10.1111/j.1600-0390.2017.12184.x · DOI
  13. [19]Furholt, M. Re-integrating archaeology: a contribution to aDNA studies and the migration discourse on the 3rd millennium BC in Europe. Proc. Prehist. Soc. 85, 1–15 (2019).
  14. [20]Furholt M Massive Migrations? The Impact of Recent aDNA Studies on our View of Third Millennium Eur. Eur. J. Archaeol. 2018 21 159 191 10.1017/eaa.2017.43 · DOI
  15. [21]Juras A Mitochondrial genomes reveal an east to west cline of steppe ancestry in Corded Ware populations Sci. Rep. 2018 8 11603 10.1038/s41598-018-29914-5 30072694 PMC6072757 · DOI
  16. [23]Marciniak S Perry GH Harnessing ancient genomes to study the history of human adaptation Nat. Rev. Genet. 2017 18 659 674 10.1038/nrg.2017.65 28890534 · DOI
  17. [24]Mathieson I The genomic history of southeastern Europe Nature 2018 555 197 203 10.1038/nature25778 29466330 PMC6091220 · DOI
  18. [26]Porčić M Blagojević T Stefanović S Demography of the early Neolithic population in Central Balkans: population dynamics reconstruction using summed radiocarbon probability distributions PLoS ONE 2016 11 e0160832 10.1371/journal.pone.0160832 27508413 PMC4980024 · DOI
  19. [27]Shennan S Regional population collapse followed initial agriculture booms in mid-Holocene Europe Nat. Commun. 2013 4 2486 10.1038/ncomms3486 24084891 PMC3806351 · DOI
  20. [28]Rasmussen S Early Divergent Strains of Yersinia pestis in Eurasia 5,000 Years Ago Cell 2015 163 571 582 10.1016/j.cell.2015.10.009 26496604 PMC4644222 · DOI
  21. [29]Demeure CE Yersinia pestis and plague: an updated view on evolution, virulence determinants, immune subversion, vaccination, and diagnostics Genes Immun. 2019 20 357 370 10.1038/s41435-019-0065-0 30940874 PMC6760536 · DOI
  22. [30]Andrades Valtueña A The stone age plague and its persistence in Eurasia Curr. Biol. 2017 27 3683 3691 10.1016/j.cub.2017.10.025 29174893 · DOI
  23. [31]Spyrou MA Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague Nat. Commun. 2018 9 2234 10.1038/s41467-018-04550-9 29884871 PMC5993720 · DOI
  24. [33]Rendine S Piazza A Cavalli-Sforza LL Simulation and separation by principal components of multiple demic expansions in Europe Am. Nat. 1986 128 681 706 10.1086/284597 · DOI
  25. [34]Barbujani G Sokal RR Oden NL Indo-European origins: a computer-simulation test of five hypotheses. Am J. Phys. Anthropol. 1995 96 109 132 10.1002/ajpa.1330960202 7755103 · DOI · Paper page
  26. [37]Beaumont MA Zhang W Balding DJ Approximate Bayesian computation in population genetics Genetics 2002 162 2025 2035 10.1093/genetics/162.4.2025 12524368 PMC1462356 · DOI · Paper page
  27. [38]Amorim CEG Long-distance dispersal suppresses introgression of local alleles during range expansions Heredity 2017 118 135 142 10.1038/hdy.2016.68 27577693 PMC5234476 · DOI
  28. [40]Saag L Genetic ancestry changes in Stone to Bronze Age transition in the East European plain Sci. Adv. 2021 7 eabd6535 10.1126/sciadv.abd6535 33523926 PMC7817100 · DOI
  29. [41]Alves I Long-distance dispersal shaped patterns of human genetic diversity in Eurasia Mol. Biol. Evol. 2016 33 946 958 10.1093/molbev/msv332 26637555 PMC4776706 · DOI
  30. [42]Pimenta J Lopes AM Comas D Amorim A Arenas M Evaluating the Neolithic expansion at both shores of the Mediterranean Sea Mol. Biol. Evol. 2017 34 3232 3242 10.1093/molbev/msx256 29029191 · DOI
  31. [43]Currat M Poloni ES Sanchez-Mazas A Human genetic differentiation across the Strait of Gibraltar BMC Evol. Biol. 2010 10 237 10.1186/1471-2148-10-237 20682051 PMC3020631 · DOI
  32. [44]Di, D., Sanchez-Mazas, A. & Currat, M. Computer simulation of human leukocyte antigen genes supports two main routes of colonization by human populations in East Asia. BMC Evol. Biol. 15, 1908–1920 (2015). PMC4632674 26530905
  33. [45]Brandt G Ancient DNA reveals key stages in the formation of Central European mitochondrial genetic diversity Science 2013 342 257 261 10.1126/science.1241844 24115443 PMC4039305 · DOI · Paper page
  34. [46]Cavalli-Sforza LL Menozzi P Piazza A Demic expansions and human evolution Sci. N. Ser. 1993 259 639 646 10.1126/science.8430313 8430313 · DOI
  35. [47]Veeramah KR The importance of fine-scale studies for integrating paleogenomics and archaeology Curr. Opin. Genet. Dev. 2018 53 83 89 10.1016/j.gde.2018.07.007 30081254 · DOI
  36. [48]Zvelebil M The agricultural transition and the origins of Neolithic society in Eur. Doc. Praehist. 2001 28 1 26 10.4312/dp.28.1 · DOI
  37. [49]Parreira BR Chikhi L On some genetic consequences of social structure, mating systems, dispersal, and sampling Proc. Natl Acad. Sci. 2015 112 E3318 E3326 10.1073/pnas.1414463112 26080393 PMC4491764 · DOI
  38. [51]Lipson M Parallel palaeogenomic transects reveal complex genetic history of early European farmers Nature 2017 551 368 372 10.1038/nature24476 29144465 PMC5973800 · DOI · Paper page
  39. [52]deMenocal PB Cultural Responses to Climate Change During the Late Holocene Science 2001 292 667 673 10.1126/science.1059827 11303088 · DOI
  40. [53]Magny M Holocene climate variability as reflected by mid-European lake-level fluctuations and its probable impact on prehistoric human settlements Quat. Int. 2004 113 65 79 10.1016/S1040-6182(03)00080-6 · DOI
  41. [55]Wang J The abrupt climate change near 4,400 yr BP on the cultural transition in Yuchisi, China and its global linkage Sci. Rep. 2016 6 27723 10.1038/srep27723 27283832 PMC4901284 · DOI
  42. [57]Wiener MH The interaction of climate change and agency in the collapse of civilizations ca. 2300–2000 BC Radiocarbon 2014 56 S1 S16 10.2458/azu_rc.56.18325 · DOI
  43. [58]Rees WE Revisiting carrying capacity: area-based indicators of sustainability Popul. Environ. 1996 17 195 215 10.1007/BF02208489 · DOI
  44. [59]Arrow K Economic growth, carrying capacity, and the environment Science 1995 268 520 521 10.1126/science.268.5210.520 17756719 · DOI
  45. [60]Motesharrei S Rivas J Kalnay E Human and nature dynamics (HANDY): Modeling inequality and use of resources in the collapse or sustainability of societies Ecol. Econ. 2014 101 90 102 10.1016/j.ecolecon.2014.02.014 · DOI
  46. [61]Svizzero, S. & Tisdell, C. A. The Demise of the Únĕtice Culture due to the Reduced Availability of Natural Resources for Bronze Production. Int. J. Res. Sociol. Anthropol. 4, 33 (2018).
  47. [63]Wright S Inbreeding and Homozygosis Proc. Natl Acad. Sci. 1933 19 411 420 10.1073/pnas.19.4.411 16577532 PMC1086014 · DOI
  48. [65]Goldberg A Günther T Rosenberg NA Jakobsson M Ancient X chromosomes reveal contrasting sex bias in Neolithic and Bronze Age Eurasian migrations Proc. Natl Acad. Sci. 2017 114 2657 2662 10.1073/pnas.1616392114 28223527 PMC5347611 · DOI
  49. [66]Heyer E Chaix R Pavard S Austerlitz F Sex-specific demographic behaviours that shape human genomic variation Mol. Ecol. 2012 21 597 612 10.1111/j.1365-294X.2011.05406.x 22211311 · DOI
  50. [67]Karmin M A recent bottleneck of Y chromosome diversity coincides with a global change in culture Genome Res 2015 25 459 466 10.1101/gr.186684.114 25770088 PMC4381518 · DOI
  51. [68]Rasteiro R Chikhi L Female and male perspectives on the Neolithic transition in Europe: clues from ancient and modern genetic data PLoS ONE 2013 8 e60944 10.1371/journal.pone.0060944 23613761 PMC3629215 · DOI
  52. [69]Downey SS Haas WR Shennan SJ European Neolithic societies showed early warning signals of population collapse Proc. Natl Acad. Sci. 2016 113 9751 9756 10.1073/pnas.1602504113 27573833 PMC5024635 · DOI
  53. [70]Colledge S Conolly J Shennan S Archaeobotanical Evidence for the Spread of Farming in the Eastern Mediterranean Curr. Anthropol. 2004 45 S35 S58 10.1086/422086 · DOI
  54. [73]Volterra V Variations and fluctuations of the number of individuals in animal species living together ICES J. Mar. Sci. 1928 3 3 51 10.1093/icesjms/3.1.3 · DOI
  55. [74]Rascovan N Emergence and Spread of Basal Lineages of Yersinia pestis during the Neolithic Decline Cell 2019 176 295 305 10.1016/j.cell.2018.11.005 30528431 · DOI
  56. [77]Ramsey CB Methods for summarizing radiocarbon datasets Radiocarbon 2017 59 1809 1833 10.1017/RDC.2017.108 · DOI · Paper page
  57. [78]Reimer PJ IntCal13 and marine13 radiocarbon age calibration curves 0–50,000 years cal BP Radiocarbon 2013 55 1869 1887 10.2458/azu_js_rc.55.16947 · DOI · Paper page
  58. [79]Furholt, M. Mobility and social change: understanding the European neolithic period after the archaeogenetic revolution. J. Archaeol. Res. 10.1007/s10814-020-09153-x (2021). · DOI
  59. [80]Csilléry K François O Blum MG B. abc: an R package for approximate Bayesian computation (ABC) Methods Ecol. Evol. 2012 3 475 479 10.1111/j.2041-210X.2011.00179.x 20488578 · DOI
  60. [82]Jeffreys, H. Theory of probability. (Clarendon Press; Oxford University Press, 1998).

Cited by

Sorted by citations

Authors
Rio, J., Quilodrán, C. S., & Currat, M.
Affiliations
University of Geneva (CH)
Corresponding author
Currat, Mathias
Venue
Communications Biology
Published
2021-10-07
Volume
4
Issue
1
Pages
1163-1163
ISSN
2399-3642 (ISSN-L)
OpenAlex
W3204685099
Cited by
7
References
10
Citations by year
2026: 1 · 2025: 3 · 2024: 1 · 2023: 1 · 2021: 1
FWCI
0.42
Type
journal article
Language
en
Open access
Locations
  • Communications Biology (publishedVersion, cc-by)
  • PubMed Central (publishedVersion, cc-by)
  • PubMed (publishedVersion)
  • Archive ouverte UNIGE (University of Geneva) (publishedVersion, other-oa)
  • Archive ouverte UNIGE (University of Geneva) (submittedVersion, cc-by)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
  • Institute of Genetics and Genomics in Geneva (IGE3), University of Geneva, Geneva, Switzerland
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung (P400PB_183930, 31003A_182577)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Forensic and Genetic Research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic diversity and population structure
  • Social Sciences › Arts and Humanities › Archeology › Ancient and Medieval Archaeology Studies
Keywords
Bronze Age, Central Europe, paleogenomics, spatially explicit simulation, population admixture, Yamnaya, Pontic steppe, long-distance dispersal, population decline, cohabitation, gene flow, population competition, genomic changes
MeSH terms
Farmers, DNA, Ancient, Archaeology, Europe, Humans, Genome, Human, Human Migration

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review