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Purification and functional characterization of the human N‐CoR complex: the roles of HDAC3, TBL1 and TBLR1
Open accessAbstract
Corepressors N-CoR and SMRT participate in diverse repression pathways and exist in large protein complexes including HDAC3, TBL1 and TBLR1. However, the roles of these proteins in SMRT-N-CoR complex function are largely unknown. Here we report the purification and functional characterization of the human N-CoR complex. The purified N-CoR complex contains 10-12 associated proteins, including previously identified components and a novel actin-binding protein IR10. We show that TBL1/TBLR1 associates with N-CoR through two independent interactions: the N-terminal region and the C-terminal WD-40 repeats interact with the N-CoR RD1 and RD4 region, respectively. In vitro, TBL1/TBLR1 bind histones H2B and H4, and, importantly, repression by TBL1/TBLR1 correlates with their interaction with histones. By using specific small interference RNAs (siRNAs), we demonstrate that HDAC3 is essential, whereas TBL1 and TBLR1 are functionally redundant but essential for repression by unliganded thyroid hormone receptor. Together, our data reveal the roles of HDAC3 and TBL/TBLR1 and provide evidence for the functional importance of histone interaction in repression mediated by SMRT-N-CoR complexes.
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“In contrast, HDAC3 appears to be uniquely recruited to the SMRT/NCoR complex where it interacts with a conserved deacetylase-activation-domain (DAD) within SMRT or NCoR8,10,12,24,25,26.”
From Structure of Hdac3 Bound to Co-Repressor and Inositol Tetraphosphate (2012) · cites this paper as [25]
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Cites
Dignam, J. D., Lebovitz, R. M., & Roeder, R. G. (1983) · Nucleic Acids Research · doi:10.1093/nar/11.5.1475 · Cited by 11,262
Jenuwein, T., & Allis, C. D. (2001) · Science · doi:10.1126/science.1063127 · Cited by 9,756
The nuclear receptor superfamily: the second decade
Mangelsdorf, D. J., Thummel, C., Beato, M., Herrlich, P., Schütz, G., Umesono, K., Blumberg, B., Kastner, P., Mark, M., Chambon, P., et al. (1995) · Cell · doi:10.1016/0092-8674(95)90199-x · Cited by 6,964
Chen, X., Xiu, M., Xing, J., Yu, S., Min, D., & Guo, F. (2017) · Cellular Physiology and Biochemistry · doi:10.1159/000479439 · Cited by 5,760
The coregulator exchange in transcriptional functions of nuclear receptors
Glass, C. K., & Rosenfeld, M. G. (2000) · Genes & Development · doi:10.1101/gad.14.2.121 · Cited by 2,233
Hörlein, A., Näär, A. M., Heinzel, T., Torchia, J., Gloss, B. R., Kurokawa, R., Ryan, A. K., Kamei, Y., Söderström, M., Glass, C. K., et al. (1995) · Nature · doi:10.1038/377397a0 · Cited by 2,072
Dent, S., Denu, J. M., & Allis, C. D. (2001) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.70.1.81 · Cited by 1,906
A transcriptional co-repressor that interacts with nuclear hormone receptors
Chen, J. D., & Evans, R. M. (1995) · Nature · doi:10.1038/377454a0 · Cited by 1,794
Nuclear Receptor Repression Mediated by a Complex Containing SMRT, mSin3A, and Histone Deacetylase
Nagy, L., Kao, H.-Y., Chakravarti, D., Lin, R. J., Hassig, C. A., Ayer, D. E., Schreiber, S. L., & Evans, R. M. (1997) · Cell · doi:10.1016/s0092-8674(00)80218-4 · Cited by 1,230
A complex containing N-CoR, mSln3 and histone deacetylase mediates transcriptional repression
Heinzel, T., Lavinsky, R. M., Mullen, T.-M., Söderström, M., Laherty, C. D., Torchia, J., Yang, W., Brard, G., Ngo, S. D., Davie, J., et al. (1997) · Nature · doi:10.1038/387043a0 · Cited by 1,210
Analysis of gene function in somatic mammalian cells using small interfering RNAs
Elbashir, S. M. (2002) · Methods · doi:10.1016/s1046-2023(02)00023-3 · Cited by 1,099
Chromatin Structure and Function
Nicolini, C. A. (1979) · Springer eBooks · doi:10.1007/978-1-4684-0973-4 · Cited by 1,035
Xue, Y., Wong, J., Moreno, G. T., Young, M. K., Côté, J., & Wang, W. (1998) · Molecular Cell · doi:10.1016/s1097-2765(00)80299-3 · Cited by 983
Self-citationZhang, Y., LeRoy, G., Seelig, H.-P., Lane, W. S., & Reinberg, D. (1998) · Cell · doi:10.1016/s0092-8674(00)81758-4 · Cited by 814
Mi-2 complex couples DNA methylation to chromatin remodelling and histone deacetylation
Wade, P. A., Gégonne, A., Jones, P. L., Ballestar, E., Aubry, F., & Wolffe, A. P. (1999) · Nature Genetics · doi:10.1038/12664 · Cited by 811
Both corepressor proteins SMRT and N‐CoR exist in large protein complexes containing HDAC3
Li, J., Wang, J., Wang, J., Nawaz, Z., Liu, J. M., Qin, J., & Wong, J. (2000) · The EMBO Journal · doi:10.1093/emboj/19.16.4342 · Cited by 629
Self-citationThe SMRT and N-CoR Corepressors Are Activating Cofactors for Histone Deacetylase 3
Guenther, M. G., Barak, O., & Lazar, M. A. (2001) · Molecular and Cellular Biology · doi:10.1128/mcb.21.18.6091-6101.2001 · Cited by 611
Histone acetylases and deacetylases in cell proliferation
Kouzarides, T. (1999) · Current Opinion in Genetics & Development · doi:10.1016/s0959-437x(99)80006-9 · Cited by 607
Histone Deacetylases and SAP18, a Novel Polypeptide, Are Components of a Human Sin3 Complex
Zhang, Y., Iratni, R., Erdjument-Bromage, H., Tempst, P., & Reinberg, D. (1997) · Cell · doi:10.1016/s0092-8674(00)80216-0 · Cited by 578
Combinatorial Roles of the Nuclear Receptor Corepressor in Transcription and Development
Jepsen, K., Hermanson, O., Onami, T. M., Gleiberman, A. S., Lunyak, V. V., McEvilly, R. J., Kurokawa, R., Kumar, V., Liu, F. C., Seto, E., et al. (2000) · Cell · doi:10.1016/s0092-8674(00)00064-7 · Cited by 511
A core SMRT corepressor complex containing HDAC3 and TBL1, a WD40-repeat protein linked to deafness
Guenther, M. G., Lane, W. S., Fischle, W., Verdin, E., Lazar, M. A., & Shiekhattar, R. (2000) · Genes & Development · doi:10.1101/gad.14.9.1048 · Cited by 489
Glass, C. K., Lipkin, S. M., Devary, O. V., & Rosenfeld, M. G. (1989) · Cell · doi:10.1016/0092-8674(89)90016-0 · Cited by 478
Baniahmad, A., Steiner, C., Köhne, A. C., & Renkawitz, R. (1990) · Cell · doi:10.1016/0092-8674(90)90532-j · Cited by 461
Repression domain of the yeast global repressor Tup1 interacts directly with histones H3 and H4.Preprint
Edmondson, D. G., Smith, M. M., & Roth, S. Y. (1996) · Genes & Development · doi:10.1101/gad.10.10.1247 · Cited by 456
Kao, H., Downes, M., Ordentlich, P., & Evans, R. M. (2000) · Genes & Development · doi:10.1101/gad.14.1.55 · Cited by 424
Zhang, J., Kalkum, M., Chait, B. T., & Roeder, R. G. (2002) · Molecular Cell · doi:10.1016/s1097-2765(02)00468-9 · Cited by 414
The histone deacetylase-3 complex contains nuclear receptor corepressors
Wen, Y.-D., Perissi, V., Staszewski, L. M., Yang, W.-M., Krones, A., Glass, C. K., Rosenfeld, M. G., & Seto, E. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.97.13.7202 · Cited by 378
Huang, E. Y., Zhang, J., Miska, E. A., Guenther, M. G., Kouzarides, T., & Lazar, M. A. (2000) · Genes & Development · doi:10.1101/gad.14.1.45 · Cited by 326
Underhill, C., Qutob, M. S., Yee, S.-P., & Torchia, J. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.m007864200 · Cited by 323
Wong, J., Shi, Y., & Wolffe, A. P. (1995) · Genes & Development · doi:10.1101/gad.9.21.2696 · Cited by 226
Self-citationUnique forms of human and mouse nuclear receptor corepressor SMRT.
Ordentlich, P., Downes, M., Xie, W., Genin, A., Spinner, N., & Evans, R. (1999) · Proceedings of the National Academy of Sciences of the United States of America · doi:10.1073/pnas.96.6.2639 · Cited by 183
Wong, J., Patterton, D., Imhof, A., Guschin, D. Y., Shi, Y., & Wolffe, A. P. (1998) · The EMBO Journal · doi:10.1093/emboj/17.2.520 · Cited by 162
Self-citationSharma, D., & Fondell, J. D. (2002) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.122004799 · Cited by 160
Self-citationPark, E.-J., Schroen, D. J., Yang, M., Li, H. Z., Li, L., & Chen, J. D. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.7.3519 · Cited by 129
Li, J., Lin, Q., Wang, W., Wade, P. A., & Wong, J. (2002) · Genes & Development · doi:10.1101/gad.962502 · Cited by 126
Self-citationMultiple N-CoR Complexes Contain Distinct Histone Deacetylases
Jones, P. L., Sachs, L. M., Rouse, N., Wade, P. A., & Shi, Y. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.c000879200 · Cited by 98
A Strategy for Rapid, High-Confidence Protein Identification
Qin, J., Fenyö, D., Zhao, Y., Hall, W. W., Chao, D. M., Wilson, C. J., Young, R. A., & Chait, B. T. (1997) · Analytical Chemistry · doi:10.1021/ac970488v · Cited by 90
Self-citationHistone-Dependent Association of Tup1-Ssn6 with Repressed Genes In Vivo
Davie, J. K., Trumbly, R. J., & Dent, S. (2002) · Molecular and Cellular Biology · doi:10.1128/mcb.22.3.693-703.2002 · Cited by 80
In vivo repression of an erythroid‐specific gene by distinct corepressor complexes
RIETVELD, L. E. G., Caldenhoven, E., & Stunnenberg, H. G. (2002) · The EMBO Journal · doi:10.1093/emboj/21.6.1389 · Cited by 43
cDNA Cloning of a Novel WD Repeat Protein Mapping to the 9q22.3 Chromosomal Region
Zaphiropoulos, P. G., & Toftgård, R. (1996) · DNA and Cell Biology · doi:10.1089/dna.1996.15.1049 · Cited by 27
Ohashi, H., Yang, Y.-F., & Walfish, P. G. (1991) · Biochemical and Biophysical Research Communications · doi:10.1016/0006-291x(91)91015-5 · Cited by 21
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Molecular Aspects of Thyroid Hormone Actions
Cheng, S.-Y., Leonard, J. L., & Davis, P. J. (2010) · Endocrine Reviews · doi:10.1210/er.2009-0007 · Cited by 1,384
A SUMOylation-dependent pathway mediates transrepression of inflammatory response genes by PPAR-γ
Pascual, G., Fong, A. L., Ogawa, S., Gamliel, A., Li, A. C., Perissi, V., Rose, D. W., Willson, T. M., Rosenfeld, M. G., & Glass, C. K. (2005) · Nature · doi:10.1038/nature03988 · Cited by 1,287
Reversal of Histone Lysine Trimethylation by the JMJD2 Family of Histone Demethylases
Whetstine, J. R., Nottke, A. C., Lan, F., Huarte, M., Smolikov, S., Chen, Z., Spooner, E., Li, E., Zhang, G., Colaiácovo, M. P., et al. (2006) · Cell · doi:10.1016/j.cell.2006.03.028 · Cited by 1,075
Rosenfeld, M. G., Lunyak, V. V., & Glass, C. K. (2006) · Genes & Development · doi:10.1101/gad.1424806 · Cited by 952
Fujimoto, A., Furuta, M., Totoki, Y., Tsunoda, T., Kato, M., Shiraishi, Y., Tanaka, H., Taniguchi, H., Kawakami, Y., Ueno, M., et al. (2016) · Nature Genetics · doi:10.1038/ng.3547 · Cited by 704
Metadata
- Authors
- Yoon, H., Chan, D. W., Huang, Z., Li, J., Fondell, J. D., Qin, J., & Wong, J.
- Affiliations
- Baylor College of Medicine (US)
- Corresponding author
- Wong, Jiemin
- ORCID
- Yoon, Ho‐Geun
- Venue
- The EMBO Journal
- Published
- 2003-03-17
- Volume
- 22
- Issue
- 6
- Pages
- 1336-1346
- ISSN
- 0261-4189 (ISSN-L)
- 1460-2075
- PMC
- PMC151047
- OpenAlex
- W1969097053
- Cited by
- 444
- References
- 42
- Citations by year
- 2026: 10 · 2025: 7 · 2024: 12 · 2023: 17 · 2022: 7 · 2021: 13 · 2020: 16 · 2019: 14 · 2018: 13 · 2017: 16 · 2016: 18 · 2015: 18 · 2014: 19 · 2013: 21 · 2012: 23
- FWCI
- 10.57
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- The EMBO Journal (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- YUHSpace (Yonsei University Medical Library) (submittedVersion, cc-by-nc-nd)
- Funders
- National Institute of Diabetes and Digestive and Kidney Diseases (DK 58679, R01DK056324, R01DK058679, DK 56324)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Histone Deacetylase Inhibitors Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Endocrinology › Estrogen and related hormone effects
- Keywords
- SMRT, HDAC3, TBL1, corepressors, transcriptional repression, histone interaction, histone H2B, histone H4, thyroid hormone receptor, actin-binding proteins, WD40 repeats, protein complex purification, functional redundancy
- MeSH terms
- Histone Deacetylase 3, Amino Acid Sequence, Cell Line, DNA-Binding Proteins, HeLa Cells, Histone Deacetylases, Histones, Humans, Microfilament Proteins, Nuclear Proteins, Peptide Fragments, Protein Binding, Receptors, Thyroid Hormone, Recombinant Proteins, Repressor Proteins, Transducin, Sequence Homology, Amino Acid, Protein Structure, Tertiary, Receptors, Cytoplasmic and Nuclear, Protein Subunits, RNA, Small Interfering
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