The DOI matches its Crossref record; 7 of the 7 references it cites were found in a registry or an index.
WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans
Open accessAbstract
WormBase (www.wormbase.org) is the central repository for the genetics and genomics of the nematode Caenorhabditis elegans. We provide the research community with data and tools to facilitate the use of C. elegans and related nematodes as model organisms for studying human health, development, and many aspects of fundamental biology. Throughout our 22-year history, we have continued to evolve to reflect progress and innovation in the science and technologies involved in the study of C. elegans. We strive to incorporate new data types and richer data sets, and to provide integrated displays and services that avail the knowledge generated by the published nematode genetics literature. Here, we provide a broad overview of the current state of WormBase in terms of data type, curation workflows, analysis, and tools, including exciting new advances for analysis of single-cell data, text mining and visualization, and the new community collaboration forum. Concurrently, we continue the integration and harmonization of infrastructure, processes, and tools with the Alliance of Genome Resources, of which WormBase is a founding member.
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Cites
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<tt>BLAT</tt> —The <tt>BLAST</tt> -Like Alignment Tool
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Joint probabilistic modeling of single-cell multi-omic data with totalVI
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Cited by
Harrison, P. W., Amode, M. R., Austine-Orimoloye, O., Azov, A. G., Barba, M., Barnes, I., Becker, A., Bennett, R., Berry, A., Bhai, J., et al. (2024) · Nucleic Acids Research · doi:10.1093/nar/gkad1049 · Cited by 742
Self-citationAging clocks based on accumulating stochastic variation
Meyer, D. H., & Schumacher, B. (2024) · Nature Aging · doi:10.1038/s43587-024-00619-x · Cited by 128
Phosphoregulation of DSB-1 mediates control of meiotic double-strand break activity
Guo, H., Stamper, E. L., Sato-Carlton, A., Shimazoe, M. A., Li, X., Zhang, L., Stevens, L., Tam, K. J., Dernburg, A. F., & Carlton, P. M. (2022) · eLife · doi:10.7554/elife.77956 · Cited by 32
Systems to model the personalized aspects of microbiome health and gut dysbiosis
Matthewman, C., Narin, A., Huston, H., & Hopkins, C. E. (2023) · Molecular Aspects of Medicine · doi:10.1016/j.mam.2022.101115 · Cited by 23
Nuclear envelope assembly relies on CHMP-7 in the absence of BAF–LEM-mediated hole closure
Barger, S. R., Penfield, L., & Bahmanyar, S. (2023) · Journal of Cell Science · doi:10.1242/jcs.261385 · Cited by 17
Sonntag, T., Omi, S., Andreeva, A., Valotteau, C., Eichelbrenner, J., Chisholm, A. D., Ward, J. D., & Pujol, N. (2025) · PLOS Genetics · doi:10.1371/journal.pgen.1011593 · Cited by 9
Ciccarelli, E. J., Wing, Z., Bendelstein, M., Johal, R. K., Singh, G., Monas, A., & Savage-Dunn, C. (2024) · PLOS Genetics · doi:10.1371/journal.pgen.1011324 · Cited by 7
Lalit, F., & Jose, A. M. (2025) · Nucleic Acids Research · doi:10.1093/nar/gkae1246 · Cited by 3
Metadata
- Authors
- Davis, P., Zarowiecki, M., Arnaboldi, V., Becerra, A., Cain, S., Chan, J., Chen, W. J., Cho, J., da Veiga Beltrame, E., Diamantakis, S., Gao, S., Grigoriadis, D., Grove, C. A., Harris, T. W., Kishore, R., Le, T., Lee, R. Y. N., Luypaert, M., Müller, H.-M., Nakamura, C., Nuin, P., Paulini, M., Quinton-Tulloch, M., Raciti, D., Rodgers, F. H., Russell, M., Schindelman, G., Singh, A., Stickland, T., Van Auken, K., Wang, Q., Williams, G., Wright, A. J., Yook, K., Berriman, M., Howe, K. L., Schedl, T., Stein, L., & Sternberg, P. W.
- Venue
- Genetics
- Publisher
- Oxford University Press (OUP)
- Published
- 2022-02-04
- Volume
- 220
- Issue
- 4
- ISSN
- 0016-6731 (ISSN-L)
- 1943-2631
- OpenAlex
- W4210914372
- Cited by
- 269
- References
- 7
- FWCI
- 17.40
- Type
- journal article
- Language
- en
- Open access
- hybrid
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
