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Evaluating the potential role of pleiotropy in Mendelian randomization studies
Open accessAbstract
Pleiotropy, the phenomenon of a single genetic variant influencing multiple traits, is likely widespread in the human genome. If pleiotropy arises because the single nucleotide polymorphism (SNP) influences one trait, which in turn influences another ('vertical pleiotropy'), then Mendelian randomization (MR) can be used to estimate the causal influence between the traits. Of prime focus among the many limitations to MR is the unprovable assumption that apparent pleiotropic associations are mediated by the exposure (i.e. reflect vertical pleiotropy), and do not arise due to SNPs influencing the two traits through independent pathways ('horizontal pleiotropy'). The burgeoning treasure trove of genetic associations yielded through genome wide association studies makes for a tantalizing prospect of phenome-wide causal inference. Recent years have seen substantial attention devoted to the problem of horizontal pleiotropy, and in this review we outline how newly developed methods can be used together to improve the reliability of MR.
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“This pattern is consistent with a directional influence of disease liability on longevity27,64 and is also compatible with vertical pleiotropy65.”
From Genetic trade-offs in fertility and longevity explain the maintenance of disease-associated alleles in humans (2026) · cites this paper as [65]
In the citing paper
“However, confounding of the genetic variants with the outcome in a sample can be induced by population stratification, dynastic effects and assortative mating,60 violating the second IV condition.”
From Mendelian randomization (2022) · cites this paper as [60]
In the citing paper
“If there are many correlated candidate variants in a gene region, then including all variants in a single analysis will typically result in numerical instability, as the analysis can be highly sensitive to small changes in the variant correlation matrix 62 .”
From Guidelines for performing Mendelian randomization investigations (2020) · cites this paper as [62]
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Cites
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“The FE-IVW and RE-IVW were used when P > 0.05 and P 0.05, respectively, to provide a more conservative but robust MR estimate (31).”
MethodInfluentialLiang, C., Chen, Q., & Zhang, Y. (2024) · Therapeutic Advances in Drug Safety · doi:10.1177/20420986231224236 · Cited by 7
“In drug-target MR analysis, we used three MR methods 25 –27 [inverse variance weighting (IVW), median weighting, and MR-Egger] to infer causal relationships between TPORDs and five TEEs.”
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Timasheva, Y., Balkhiyarova, Z., Avzaletdinova, D. S., Вячеславовна, М. Т., Korytina, G. F., Nouwen, A., Prokopenko, I., & Kochetova, O. V. (2024) · Nutrients · doi:10.3390/nu16081166 · Cited by 8
“…the instrument (SNPs for eating behaviour) and outcome (metabolic syndrome and 17 anthropometric and metabolic parameters in people with metabolic syndrome) other than through the exposure (eating behaviour)—otherwise known as horizontal pleiotropy or the exclusion restriction assumption [52].”
BackgroundSkåra, K. H., Hernáez, Á., Næss, Ø., Fraser, A., Lawlor, D. A., Burgess, S., Brumpton, B. M., & Magnus, M. C. (2024) · Human Reproduction Open · doi:10.1093/hropen/hoae033 · Cited by 8
“As mentioned, MR results can be confounded by weak genetic instruments, population structure, and horizontal pleiotropy (Greenland, 2000; Davey Smith and Ebrahim, 2003; Smith and Ebrahim, 2004; Hemani et al. , 2018).”
BackgroundWu, T. Q., Han, X., Liu, C. Y., Zhao, N., & Ma, J. (2024) · Frontiers in Public Health · doi:10.3389/fpubh.2024.1366838 · Cited by 7
“Despite its low statistical power, the MR Egger method can detect potential pleiotropy and present estimates after controlling for multiple effects (42).”
MethodLi, Z., Wen, J., Wu, W., Dai, Z., Liang, X., Zhang, N., Cheng, Q., & Zhang, H. (2024) · CNS Neuroscience & Therapeutics · doi:10.1111/cns.14812 · Cited by 7
“37 TSMR analysis was performed to assess the effects of air pollutants on ALS.”
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“…included MR-Pleiotropy Residual Sum and Outlier (MR-PRESSO) for horizontal pleiotropy; MR-Egger intercept tests for directional pleiotropy [37, 43]; Cochran’s Q test for heterogeneity [44]; and leave-one-out MR analyses to evaluate whether a single SNP has an excessive impact on MR analysis [45].”
MethodA novel framework with automated horizontal pleiotropy adjustment in mendelian randomization
Lin, Z. (2024) · Human Genetics and Genomics Advances · doi:10.1016/j.xhgg.2024.100339 · Cited by 7
“22 This phenomenon is not uncommon.”
Ye, L., Cheng, Y., Li, P., Wang, Y., & Ma, W. (2024) · Briefings in Bioinformatics · doi:10.1093/bib/bbaf037 · Cited by 7
“…variants to ensure independence, applying one or more estimation methods—most commonly the inverse variance weighted (IVW) estimator as the primary approach—and performing sensitivity analyses, such as MR-Egger and weighted median methods, to detect and mitigate horizontal pleiotropy [26, 27].”
White Matter and Alzheimer’s Disease: A Bidirectional Mendelian Randomization Study
Li, Y., Zheng, J., Li, T. X., & Zhang, J. (2022) · Neurology and Therapy · doi:10.1007/s40120-022-00353-9 · Cited by 7
“, MR-Egger regression [21], weighted mode-based method [22], and weighted median approach [23]) as complementary analyses to decrease the bias of horizontal pleiotropy, which would result in loss of robust statistical power [24].”
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“There are two types of pleiotropy (horizontal pleiotropy as well as vertical pleiotropy) [33, 34].”
BackgroundRetractedSun, Y., Li, Y., Xie, X., Li, J., Zhang, K., & Yu, T. (2023) · PLoS ONE · doi:10.1371/journal.pone.0279198 · Cited by 8
Zhang, X., Zhang, X., Feng, S., & Li, H. (2023) · Frontiers in Physiology · doi:10.3389/fphys.2023.1089637 · Cited by 7
“…every genetic variant (Liu et al., 2021) and a nonsignificant Q value may also to a certain extent imply the absence of horizontal pleiotropy issue (Hemani et al., 2018); 5) The Leave-One-Out (LOO) was used to examine if the pooled estimate is disproportionately influenced by each genetic variant…”
MethodFang, T., Zhang, Z., Zhou, H., Wu, W., & Zou, L. (2023) · Frontiers in Neuroinformatics · doi:10.3389/fninf.2023.1154916 · Cited by 8
“The proof of the second and third hypotheses is to examine horizontal pleiotropy, which is the focus and difficulty of MR research (Hemani et al., 2018).”
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“Therefore, we concluded that there was no evidence of directional pleiotropy in this case ( P > 0.05) [19].”
BackgroundInfluentialProtective effect of uridine on atrial fibrillation: a Mendelian randomisation study
Xu, X., Zhang, X., Cheng, S., Li, Q., Chen, C., & Ouyang, M. (2023) · Scientific Reports · doi:10.1038/s41598-023-47025-8 · Cited by 7
“Next, to avoid bias from linkage disequilibrium (LD), we used the method of the 1000 Genomes European Project 18 to perform clumping (r 2 , 0.001; clumping window, 10,000 kb) 19 .”
InfluentialHwang, L., Moen, G.-H., & Evans, D. M. (2022) · eLife · doi:10.7554/elife.73671 · Cited by 6
Evaluating shared genetic influences on nonsyndromic cleft lip/palate and oropharyngeal neoplasms
Howe, L. J., Hemani, G., Lesseur, C., Gaborieau, V., Ludwig, K. U., Mangold, E., Brennan, P., Ness, A., Pourcain, B. S., Smith, G. D., et al. (2020) · Genetic Epidemiology · doi:10.1002/gepi.22343 · Cited by 7
“We then used the TwoSampleMR (Hemani et al., 2018) package in R to conduct Mendelian randomization analyses; reporting the inverse‐variance weighted estimate as the primary analysis.”
MethodSelf-citationLonger sleep improves cardiovascular outcomes: time to make sleep a priority
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“The best model fit was found for a factor with coronary artery disease, peripheral artery disease, heart failure, and stroke as indicators, which we interpret as a genetic factor for ASCVD.”
Turhon, M., Maimaiti, A., Abulaiti, A., Dilixiati, Y., Zhang, F., Axier, A., Kadeer, K., Wang, Z., Yang, X., & Maimaitili, A. (2024) · Journal of Affective Disorders · doi:10.1016/j.jad.2024.01.166 · Cited by 6
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“MR-Egger measures mean pleiotropy between IVs by an intercept term and allows for the influence of mechanisms other than the exposure on outcome variables [35].”
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Genetic variation reveals the therapeutic potential of BRSK2 in idiopathic pulmonary fibrosis
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InfluentialAdiposity distribution and risks of 12 obesity-related cancers: a Mendelian randomization analysis
Hazelwood, E., Goudswaard, L. J., Lee, M. A., Vabistsevits, M., Pournaras, D. J., Brenner, H., Buchanan, D. D., Gruber, S. B., Gsur, A., Li, L., et al. (2025) · JNCI Journal of the National Cancer Institute · doi:10.1093/jnci/djaf201 · Cited by 7
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“Cochran’s Q test was performed to assess heterogeneity among genetic instruments [39], and a leave-one-out analysis was conducted to determine whether results were driven by a single influential SNP.”
Shoham, N., Dunca, D., Cooper, C., Hayes, J., McQuillin, A., Bass, N. J., Lewis, G., & Kuchenbaecker, K. B. (2023) · BJPsych Open · doi:10.1192/bjo.2023.6 · Cited by 6
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“…considered as IVs should be closely associated with the exposure, (2) the genetic variations designated as IVs should not be associated with any confounding factors, and (3) the genetic variations used as IVs should only influence the risk of the outcome through the exposure (Hemani et al. 2018a).”
BackgroundMethodInfluentialThe causal relationship between sarcopenic obesity factors and benign prostate hyperplasia
Rao, X., Xu, Z., Zhang, J., Zhou, J., Huang, J. V., Toh, Z., Zheng, R., & Zhou, Z. (2023) · Frontiers in Endocrinology · doi:10.3389/fendo.2023.1290639 · Cited by 6
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Ding, W., Huang, Y., Li, G., Dong, Y., Li, X., Wu, M., Song, K., & Li, F. (2023) · Osteoporosis International · doi:10.1007/s00198-023-07004-1 · Cited by 6
“In this case, the results of MR-Egger regression were used to interpret the association, as this method can provide more robust estimates than IVW in the presence of pleiotropy [25].”
Zhang, J., Pan, Y., Yang, H., Hu, S., Zheng, S., & He, T. (2024) · Annals of Human Genetics · doi:10.1111/ahg.12552 · Cited by 6
“In addition, five complementary methods including weighted median (Bowden et al., 2016), maximum likelihood (Nguyen et al., 2015), MR–Egger regression (Burgess & Thompson, 2017), MR-robust adjusted profile score (MR-RAPS) (Hemani et al., 2018), and MR-pleiotropy residual sum and outlier (MR-PRESSO) (Ver-banck et al.,…”
MethodInfluentialCai, H., Huang, T., Zheng, B., Zhu, X., Zhou, L., Wu, J., Xu, Y., Huang, S., Huang, Y., & Liu, T. (2024) · Medicine · doi:10.1097/md.0000000000037645 · Cited by 6
“[15] We also used the weighted median method as a complement in this analysis.”
MethodSun, D., Ma, R., Wang, J., Wang, Y., & Ye, Q. (2024) · Frontiers in Immunology · doi:10.3389/fimmu.2024.1325127 · Cited by 7
“To assess heterogeneity and evaluate the presence of horizontal pleiotropy, we performed various tests, such as the MR-Egger intercept test (37), Cochran ’ s Q test (38), and leave-one-out analyses (39).”
MethodXue, B., Jian, X., Peng, L., Wu, C., Fahira, A., Syed, A. A. S., Xia, D., Wang, B., Niu, M., Yajie, J., et al. (2024) · Sleep Medicine · doi:10.1016/j.sleep.2024.04.032 · Cited by 7
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“Cochran’s Q statistic was applied to assess the heterogeneity across individual SNPs [23].”
MethodExploring the shared genetic basis of major depressive disorder and frailty
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“42 Additionally, the STEIGER test was performed to determine the direction of causality, and leave- one-out sensitivity analyses assessed the impact of individual SNPs on MR results.”
Causality between sarcopenia and diabetic neuropathy
Fang, Y., Yuan, X., Zhang, Q., Liu, J., Yao, Q., & Ye, X. (2024) · Frontiers in Endocrinology · doi:10.3389/fendo.2024.1428835 · Cited by 8
Birth weight and adult income: An examination of mediation through adult height and body mass
Pehkonen, J., Viinikainen, J., Kari, J. T., Böckerman, P., Lehtimäki, T. J., & Raitakari, O. T. (2021) · Health Economics · doi:10.1002/hec.4387 · Cited by 6
“This may limit the finite sample bias toward the observational estimate (Hemani et al., 2018).”
BackgroundA Comprehensive Evaluation of Cross-Omics Blood-Based Biomarkers for Neuropsychiatric Disorders
Song, W., Wang, W., Liu, Z., Cai, W., Yu, S., Zhao, M., & Lin, G. N. (2021) · Journal of Personalized Medicine · doi:10.3390/jpm11121247 · Cited by 7
Edwards, C. H., Vie, G. Å., & Kinge, J. M. (2022) · BMC Health Services Research · doi:10.1186/s12913-022-07597-z · Cited by 6
“When the samples used in two-sample analyses are independent, the two-sample estimates will be biased towards zero, rather than the observational estimate [53].”
MethodCoffee and caffeine consumption and risk of renal cell carcinoma: A Mendelian randomization study
Li, B.-H., Yan, S., Li, X., Huang, Q., Luo, L.-S., Wang, X., Huang, J., Jin, Y., & Wang, Y. (2022) · Frontiers in Nutrition · doi:10.3389/fnut.2022.898279 · Cited by 6
“We performed an MR analysis based on three core assumptions: (1) the IVs are robustly related to the exposure of interest, (2) the IVs are not affected by any confounding factors, (3) and the IVs do not influence the outcome via any variable other than the exposure (17).”
MethodCai, Y., Liu, K., Wu, P., Yuan, R., He, F., & Zou, J. (2022) · BMC Genomics · doi:10.1186/s12864-022-08925-7 · Cited by 6
“The pleiotropy was divided into vertical and horizontal pleiotropy according to the pathways which SNPs influence the traits[35].”
BackgroundIdentification of potential causal metabolites associated with atopic dermatitis
Jia, Y., Wang, R., Sun, L., Guo, D., Shi, M., Zhang, K., Yang, P., Wang, Y., Liu, F., Chen, G.-C., et al. (2023) · Human Molecular Genetics · doi:10.1093/hmg/ddad005 · Cited by 6
Blood cell traits and risk of glaucoma: A two-sample mendelian randomization study
Song, D.-J., Fan, B., & Li, G. (2023) · Frontiers in Genetics · doi:10.3389/fgene.2023.1142773 · Cited by 6
Han, X., Wu, T., & Liu, C. Y. (2023) · Frontiers in Endocrinology · doi:10.3389/fendo.2023.1225600 · Cited by 9
“In addition, the MR-Egger intercept can detect and adjust pleiotropy (39).”
BackgroundMethodInfluentialLi, H., Xin, Q., Hong, L., Hu, Y., Lin, L., Guo, M., Jiang, H., He, C., Wang, S., & Li, M. (2023) · Digestive and Liver Disease · doi:10.1016/j.dld.2023.08.044 · Cited by 6
Xie, J., Gao, H., Liu, C., Pan, Y., Xu, C., & Xu, L. (2023) · Hepatology Research · doi:10.1111/hepr.13980 · Cited by 6
“23 Thus, we used multiple NAFLD risk variants and performed two sensitivity analyses to ensure the reliability of the MR estimation.”
MethodUnlocking the Medicinal Mysteries: Preventing Lacunar Stroke with Drug Repurposing
Zhang, L., Fan, W., Xia, K., Zhou, Y., Fu, Y., Huang, T., & Fan, D. (2023) · Biomedicines · doi:10.3390/biomedicines12010017 · Cited by 6
“Finally, completely ruling out pleiotropy or an alternative direct causal pathway is a challenge for all MR analyses because there are probably some unknown confounders that could influence lacunar stroke [56].”
BackgroundThe role of blood metabolites in oral cancer: insights from a Mendelian randomization approach
Hu, Z., Xu, Z., Qu, Y., Pan, X., Shi, P., Zhang, D., Zhang, J., Deng, R., & Lin, Z. (2024) · Frontiers in Oncology · doi:10.3389/fonc.2024.1305684 · Cited by 7
“Notably, MR is often likened to a “ natural ” randomized controlled trial (RCT) because alleles are randomly distributed during gamete production, possibly minimizing confounders and biases due to reverse causality (12).”
BackgroundYu, C., Xu, J., Xu, S., Tang, L., Han, Q., Zeng, X., Huang, Y., Yu, T., & Sun, Z. (2024) · Frontiers in Immunology · doi:10.3389/fimmu.2024.1339207 · Cited by 7
“Additionally, leave-one-out analysis was performed to assess the impact of a single SNP ’ s removal on the results (42).”
MethodWu, J., Sun, H., & Ma, J. (2024) · Frontiers in Neurology · doi:10.3389/fneur.2024.1346703 · Cited by 6
“We assessed potential heterogeneity with Cochran’s Q (25).”
MethodHabibi, D., Teymoori, F., Ebrahimi, N., Fateh, S. T., Bonab, L. N. H., Saeidian, A. H., Taloubaghi, A. S., Asgarian, S., Hosseinpanah, F., Hakonarson, H. H., et al. (2024) · Nutrition Metabolism and Cardiovascular Diseases · doi:10.1016/j.numecd.2024.02.013 · Cited by 6
Liu, L., Zhang, Q., Chang, J., & Yang, K. (2024) · Clinical Cosmetic and Investigational Dermatology · doi:10.2147/ccid.s450399 · Cited by 6
“16–18 In view of the uncertain causality of the relationships between DM, BMI, and LS, the present study applied MR to evaluate their correlation using data from the large Genome-Wide Association Study (GWAS).”
MethodWei-ming, X., Zhang, H.-F., Feng, Y.-H., Li, S.-J., & Xie, B.-Y. (2024) · World Journal of Clinical Cases · doi:10.12998/wjcc.v12.i14.2359 · Cited by 6
“The primary analytical method used to examine causal associations was the random-effect inverse-variance-weighted model[31].”
Du, Y., Lu, C., Bi, L., Wang, C., Zhao, M., Ding, Y., & Fan, W. (2024) · Skin Research and Technology · doi:10.1111/srt.13732 · Cited by 6
RetractedQue, H., Zhang, Q., Xu, S., Chu, T., Xu, L., & Wang, Y. (2024) · Journal of Oral Rehabilitation · doi:10.1111/joor.13771 · Cited by 6
Zhou, Q., Guo, Y., Lu, L., Lu, M., Li, G., & Peng, G.-L. (2024) · Journal of Affective Disorders · doi:10.1016/j.jad.2024.08.196 · Cited by 5
Wang, Z., Xu, K., Zhang, X., Wei, R., & Li, Z. (2024) · Journal of International Medical Research · doi:10.1177/03000605241286985 · Cited by 6
Zhao, P., Zhang, J., Liu, B., Tang, Y., Wang, L., Wang, G., Wu, H., Yang, C., Li, X., & Li, B. (2022) · Frontiers in Genetics · doi:10.3389/fgene.2022.941961 · Cited by 6
Ou, Y., Liu, Y., Wu, B., Tan, L., & Yu, J. (2022) · Annals of Translational Medicine · doi:10.21037/atm-22-1156 · Cited by 5
“MR-Egger regression is not constrained to have a slope of zero; therefore, its causal estimate represents a genotype-outcome dose-response relationship that takes pleiotropic effects into account (26,28) .”
A Mendelian randomization study of the effect of tea intake on breast cancer
Deng, Y., Ge, W., Xu, H., & Zhang, J. (2022) · Frontiers in Nutrition · doi:10.3389/fnut.2022.956969 · Cited by 6
Maternal genetic risk for depression and child human capital
Menta, G., Lepinteur, A., Clark, A. E., Ghislandi, S., & D’Ambrosio, C. (2022) · Journal of Health Economics · doi:10.1016/j.jhealeco.2022.102718 · Cited by 7
“Genetic variants can be used as a conditionally-exogenous source of variation in a variety of contexts, such as Mendelian Randomisation (see Koellinger and De Vlaming, 2019, and Hemani et al. , 2018, for reviews of some recent developments).”
Thyroid Function and the Risk of Atrial Fibrillation
Roberts, J. D. (2019) · JAMA Cardiology · doi:10.1001/jamacardio.2018.4614 · Cited by 6
Howey, R., Shin, S.-Y., Relton, C. L., Smith, G. D., & Cordell, H. J. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/639864 · Cited by 7
“In the MR literature a large (and growing) set 96 of sensitivity analyses allow relaxation of some of the assumptions required for 97 identification [32].”
BackgroundGordillo‐Marañón, M., Zwierzyna, M., Charoen, P., Drenos, F., Chopade, S., Shah, T., Engmann, J., Casas, J. P., Chaturvedi, N., Papacosta, O., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.11.11.377747 · Cited by 6
Liang, X., Mounier, N., Apfel, N., Khalid, S., Frayling, T. M., & Bowden, J. (2023) · medRxiv · doi:10.1101/2023.03.18.23287164 · Cited by 6
“61 62 For example, amajor concern inMR is violation of the exclusion restriction due to pleiotropy, the 63 general phenomenon whereby a SNP affects multiple traits [5] and therefore is associated with 64 the outcome through pathways other than the exposure.”
BackgroundSelf-citationYarmolinsky, J., Tzoulaki, I., Gunter, M. J., Travis, R. C., Smith, G. D., & Smith-Byrne, K. (2024) · JNCI Journal of the National Cancer Institute · doi:10.1093/jnci/djae064 · Cited by 6
Brigos-Barril, E., Vasallo, C., Farré, X., Morcillo-Suárez, C., Polo-Alonso, S., Rodríguez-Fernández, B., Valenzuela, A., Sarabia, C., Bosch, E., Laayouni, H., et al. (2026) · Nature Ecology & Evolution · doi:10.1038/s41559-026-03140-z · Cited by 6
“This pattern is consistent with a directional influence of disease liability on longevity 27,64 and is also compatible with vertical pleiotropy 65 .”
Katsimpris, A., Baumeister, S., Baurecht, H., Tatham, A. J., & Nolde, M. (2024) · British Journal of Ophthalmology · doi:10.1136/bjo-2023-324996 · Cited by 5
“Moreover, by summing the coefficients of determination (R 2 ) obtained from the associations between the selected SNPs and CCT, we calculated the percentage of variability in CCT that can be accounted for by the selected 24 SNPs.”
Tai, Y., Wang, H., Dai, Y., & Liang, Y. (2024) · Nature and Science of Sleep · doi:10.2147/nss.s480491 · Cited by 6
“In the sensitivity analyses, the MR-PRESSO results for chronotype showed rs76277841 played a contradictory role with other SNPs.”
MethodInfluentialBrain multi-omic Mendelian randomisation to identify novel drug targets for gliomagenesis
Thornton, Z. A., Andrews, L., Zhao, H., Zheng, J., Paternoster, L., Robinson, J. W., & Kurian, K. M. (2024) · Human Molecular Genetics · doi:10.1093/hmg/ddae168 · Cited by 6
Adiposity and domain-specific stroke recovery: A Mendelian randomization study
Wang, M., Daghlas, I., Aldridge, C., Zhang, Z., & Ren, Y. (2025) · European Stroke Journal · doi:10.1177/23969873251319916 · Cited by 5
“23,24 The intercept from the MR-Egger regression was used to assess the presence of directional horizontal pleiotropy with a p 0.05 indicating significant pleiotropy.”
InfluentialGurung, R. L., Liu, J., Liu, S., Lee, J., Zheng, H., Chan, C., Ang, K., & Lim, S. C. (2025) · Diabetes · doi:10.2337/db24-0699 · Cited by 5
A gut microbiome-kidney-heart axis predictive of future cardiovascular diseases
Chechi, K., Chakaroun, R., Myridakis, A., Forslund, S. K., Fromentin, S., Nielsen, T., Aron‐Wisnewsky, J., Belda, E., Prifti, E., Lassen, P. B., et al. (2026) · Nature Communications · doi:10.1038/s41467-026-69405-0 · Cited by 6
“One of the key sources of potential bias in the MR approach is the violation of exclusion-restriction assumption or phenomenon of horizontal pleiotropy 87 .”
Zhang, Z., Xu, W., Zheng, Y., Chen, C., Kang, X., Chen, D., Cheng, F., & Wang, X. (2023) · Experimental Dermatology · doi:10.1111/exd.14984 · Cited by 5
“39 The number of distributions in the MR-PRESSO analysis was set to 1000.”
MethodZhang, Q., Zhang, H., & Xu, Q. (2024) · International Journal of COPD · doi:10.2147/copd.s442725 · Cited by 6
Ouyang, F., Yuan, P., Ju, Y., Chen, W., Peng, Z., & Xu, H. (2024) · Frontiers in Endocrinology · doi:10.3389/fendo.2024.1340608 · Cited by 6
Armitage, J. M., Wootton, R. E., Davis, O. S. P., & Haworth, C. M. A. (2024) · npj Mental Health Research · doi:10.1038/s44184-024-00066-x · Cited by 7
“Fortunately,therearemeasuresthatcanbetakentoimprovethe reliabilityofMR,includingrunningalternativeversionsofMRthatmake differentassumptionsaboutpleiotropy,aswellasmultivariableMR 54 .”
MethodInfluentialZhang, J., Wen, J., Dai, Z., Zhang, H., Zhang, N., Lei, R., Liu, Z., Luo, P., & Cheng, Q. (2024) · Computational and Structural Biotechnology Journal · doi:10.1016/j.csbj.2024.05.012 · Cited by 5
“Thus, the weighted median and MR Egger methods were also employed, as they are more resistant to the effects of horizontal pleiotropy despite a potential reduction in statistical power [42].”
Xu, Z., Ning, F., Zhang, X., Wang, Q., Zhang, Y., Guo, Y., & Jia, H. (2024) · Frontiers in Neuroscience · doi:10.3389/fnins.2024.1398412 · Cited by 6
Mendelian randomization analysis reveals a causal relationship between preterm birth and myopia risk
Lin, B., Chen, L.-L., & Li, D. (2024) · Frontiers in Pediatrics · doi:10.3389/fped.2024.1404184 · Cited by 5
“To clarify further, if the results of the genetic pleiotropy test had shown a P -value 0.05, it would imply the presence of some inextricable association between the variables that could not be eliminated (15).”
BackgroundInfluentialAutoimmune diseases and COPD risk: A Mendelian randomization study
Ma, X., Sun, Y., Mou, H., & Zhang, W. (2024) · International Immunopharmacology · doi:10.1016/j.intimp.2024.112791 · Cited by 5
Long, K., Gong, A., Zheng, T., Liu, S., Ying, Z., & Cong, X. (2024) · Frontiers in Immunology · doi:10.3389/fimmu.2024.1433219 · Cited by 5
Liang, X., Mounier, N., Apfel, N., Khalid, S., Frayling, T. M., & Bowden, J. (2024) · Genetic Epidemiology · doi:10.1002/gepi.22582 · Cited by 8
“A major source of excess heterogeneity is undoubtedly horizontal pleiotropy , the phenomenon whereby a variant affects multiple traits and therefore is associated with the outcome through pathways other than via the exposure (Burgess et al., 2019; Hemani et al., 2018).”
Self-citationKatsimpris, A., Baumeister, S., Voulgari, N., Baurecht, H., Kandarakis, S., & Nolde, M. (2024) · Eye · doi:10.1038/s41433-024-03303-x · Cited by 5
Chen, L., Chen, C., Lin, M., Li, S., Xue, Y., & Chen, T. (2024) · Heart & Lung · doi:10.1016/j.hrtlng.2024.09.014 · Cited by 5
Jiang, R., Li, Z., Zhang, C., Zhang, G., Luo, F., Qu, Q., Tu, S., Huang, Z., Wang, Z., & Zhang, Z. (2024) · Scientific Reports · doi:10.1038/s41598-024-76116-3 · Cited by 5
“The IVW approach was applied as the main statistical analysis approach, however, it may yield biased estimates when there is directional or unbalanced horizontal pleiotropy 27 .”
MethodZhu, S., Zhang, M., Cheng, S., Wang, C., & Deng, F. (2024) · BMC Cardiovascular Disorders · doi:10.1186/s12872-024-04319-7 · Cited by 5
Yao, Y.-X., Tang, C., Si, F., Lv, J., Shi, S.-F., Zhou, S., Liu, L., & Zhang, H. (2025) · Renal Failure · doi:10.1080/0886022x.2025.2478488 · Cited by 5
“When heterogeneity existed, the IVW random effects model was employed, otherwise, the fixed effects model was used [17].”
Metadata
- Authors
- Hemani, G., Bowden, J., & Davey Smith, G.
- Affiliations
- University of Bristol (GB)
- MRC Integrative Epidemiology Unit, Population Health Sciences, University of Bristol
- Corresponding author
- Hemani, Gibran
- Venue
- Human Molecular Genetics
- Publisher
- Oxford University Press (OUP)
- Published
- 2018-05-16
- Volume
- 27
- Issue
- R2
- Pages
- R195-R208
- ISSN
- 0964-6906 (ISSN-L)
- 1460-2083
- PMC
- PMC6061876
- OpenAlex
- W2810852503
- Cited by
- 1,496
- References
- 113
- Citations by year
- 2026: 129 · 2025: 266 · 2024: 422 · 2023: 209 · 2022: 169 · 2021: 131 · 2020: 101 · 2019: 62 · 2018: 7
- FWCI
- 10.71
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Human Molecular Genetics (publishedVersion, cc-by)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Bristol Research (University of Bristol) (submittedVersion, cc-by)
- Funders
- Wellcome Trust (208806/Z/17/Z)
- Medical Research Council (MC_UU_12013/1)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
- Physical Sciences › Mathematics › Statistics and Probability › Advanced Causal Inference Techniques
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Physical Performance
- Keywords
- pleiotropy, Mendelian randomization, horizontal pleiotropy, single nucleotide polymorphisms, causal inference, phenome-wide association study, genetic variants
- MeSH terms
- Animals, Humans, Phenotype, Genetic Variation, Reproducibility of Results, Genome, Human, Polymorphism, Single Nucleotide, Genome-Wide Association Study, Mendelian Randomization Analysis, Genetic Pleiotropy
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