IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

Cited by (123)

Items 101–123 of 123

1. Molecular profiling of sponge deflation reveals an ancient relaxant-inflammatory response
   Ruperti, Fabian, Becher, Isabelle, Stokkermans, Anniek, Wang, Ling, Marschlich, Nick, Potel, Clement, Maus, Emanuel, Stein, Frank, Drotleff, Bernhard, Schippers, Klaske J. et al. · 2024 · Current Biology
2. Evolution and Legacy of East Asian Aurochs
   Hou, Jiawen, Guan, Xiwen, Xia, Xiaoting, Lyu, Yang, Liu, Xin, Mazei, Yuri, Xie, Ping, Chang, Fengqin, Zhang, Xiaonan, Chen, Jialei et al. · 2024 · Science Bulletin
3. Reductive acetogenesis is a dominant process in the ruminant hindgut
   Li, Qiushuang, Huo, Jiabin, Ni, Gaofeng, Zhang, Fan, Zhang, Shizhe, Zhang, Xiumin, Wang, Rong, Jiao, Jinzhen, Yu, Zhongtang, Pu, Xuanxuan et al. · 2025 · Microbiome
4. An evolutionarily diverged mitochondrial protein controls biofilm growth and virulence in Candida albicans
   Mamouei, Zeinab, Singh, Shakti, Lemire, Bernard, Gu, Yiyou, Alqarihi, Abdullah, Nabeela, Sunna, Li, Dongmei, Ibrahim, Ashraf, Uppuluri, Priya · 2021 · PLOS Biology
5. Human and Animal Dirofilariasis in Southeast of France
   Laidoudi, Younes, Otranto, Domenico, Stolowy, Natacha, Amrane, Sophie, Santhakumari Manoj, Ranju Ravindran, Polette, Laurine, Watier-Grillot, Stéphanie, Mediannikov, Oleg, Davoust, Bernard, L'Ollivier, Coralie · 2021 · Microorganisms
6. A single loss of photosynthesis in the diatom order Bacillariales (Bacillariophyta)
   Onyshchenko, Anastasiia, Ruck, Elizabeth C., Nakov, Teofil, Alverson, Andrew J. · 2019 · American Journal of Botany
7. An apicomplexan parasite drives the collapse of the bay scallop population in New York
   Pales Espinosa, Emmanuelle, Bouallegui, Younes, Grouzdev, Denis, Brianik, Christopher, Czaja, Raymond, Geraci-Yee, Sabrina, Kristmundsson, Arni, Muehl, Madison, Schwaner, Caroline, Tettelbach, Stephen T. et al. · 2023 · Scientific Reports
8. Genomic analyses overturn two long-standing homoploid hybrid speciation hypotheses
   Goulet‐Scott, Benjamin E., Garner, Austin G., Hopkins, Robin · 2021 · Evolution
9. Genomic atlas of Bifidobacterium infantis and B. longum informs infant probiotic design
   Shao, Yan, Wang, Shuyi, Gichuki, Bonface M., Stares, Mark D., Rozday, Timothy J., Kumar, Nitin, Browne, Hilary P., Dawson, Nicholas J.R., Njunge, James M., Tigoi, Caroline et al. · 2026 · Cell
10. Immunogenicity and Cross-Protective Efficacy Induced by an Inactivated Recombinant Avian Influenza A/H5N1 (Clade 2.3.4.4b) Vaccine against Co-Circulating Influenza A/H5Nx Viruses
    Mahmoud, Sara H., Khalil, Ahmed A., Abo Shama, Noura M., El Sayed, Marwa F., Soliman, Reem A., Hagag, Naglaa M., Yehia, Nahed, Naguib, Mahmoud M., Arafa, Abdel-Sattar, Ali, Mohamed A. et al. · 2023 · Vaccines
11. Phylogenetic tree reconstruction via graph cut presented using a quantum-inspired computer
    Onodera, Wataru, Hara, Nobuyuki, Aoki, Shiho, Asahi, Toru, Sawamura, Naoya · 2023 · Molecular Phylogenetics and Evolution
12. Structural Variations Associated with Adaptation and Coat Color in Qinghai-Tibetan Plateau Cattle
    Xia, Xiaoting, Wang, Fuwen, Luo, Xiaoyu, Li, Shuang, Lyu, Yang, Zheng, Yining, Ma, Zhijie, Qu, Kaixing, Song, Rende, Liu, Jianyong et al. · 2025 · Advanced Science
13. Available data do not rule out Ctenophora as the sister group to all other Metazoa
    2023
14. The Draft Genome of a Hydrogen-producing Cyanobacterium, <i>Arthrospira platensis</i> NIES-46
    Suzuki, Shigekatsu, Yamaguchi, Haruyo, Kawachi, Masanobu · 2019 · Journal of Genomics
15. Convergent molecular evolution of thermogenesis and circadian rhythm in Arctic ruminants
    Li, Manman, Li, Xinmei, Wu, Zhipei, Zhang, Guanghui, Wang, Nini, Dou, Mingle, Liu, Shanlin, Yang, Chentao, Meng, Guanliang, Sun, Hailu et al. · 2023 · Proceedings of the Royal Society B: Biological Sciences
16. Degradation of polyethylene by three bacteria isolated from coastal beach
    Chen, Jun-Qing, Rong, Zhen, Zheng, Dao-Qiong, Wu, Yue-Hong, Xu, Xue-Wei · 2025 · Environmental Research
17. Whole Genome Analysis of Echinocandin Non‐Susceptible Candida Glabrata Clinical Isolates: a Multi‐Center Study in China
    Li, Yi, Hou, Xin, Li, Ruoyu, Liao, Kang, Ma, Ling, Wang, Xiaoming, Ji, Ping, Kong, Haishen, Xia, Yun, Ding, Hui et al. · 2023 · BMC Microbiology
18. Genetic diversity of the major cat allergen, Fel d 1
    Cleveland, Clifford W, Davis, Brian W, Khatri, Kriti, Pomés, Anna, Chapman, Martin D, Brackett, Nicole F · 2024 · PNAS Nexus
19. Stable hypermutators revealed by the genomic landscape of genes involved in genome stability among yeast species
    Gonçalves, Carla, Steenwyk, Jacob L, Rinker, David C, Opulente, Dana A, LaBella, Abigail L, Harrison, Marie-Claire, Wolters, John F, Zhou, Xiaofan, Shen, Xing-Xing, Covo, Shay et al. · 2025 · Molecular Biology and Evolution
20. Genomic and genetic insights into speciation and pigment pattern diversification in <i>Danio</i> fishes
    Lu, Jianguo, Podobnik, Marco, Huang, Junrou, McCluskey, Braedan M., McCarthy, Shane A., Wood, Jonathan, Collins, Joanna, Torrance, James, Sims, Ying, Gao, Dong et al. · 2025
21. Resurgence of Omicron BA.2 in SARS-CoV-2 infection-naive Hong Kong
    Xie, Ruopeng, Edwards, Kimberly M., Adam, Dillon C., Leung, Kathy S.M., Tsang, Tim K., Gurung, Shreya, Xiong, Weijia, Wei, Xiaoman, Ng, Daisy Y.M., Liu, Gigi Y.Z. et al. · 2022
22. RASCL: Rapid Assessment Of SARS-CoV-2 Clades Through Molecular Sequence Analysis
    Lucaci, Alexander G, Zehr, Jordan D, Shank, Stephen D, Bouvier, Dave, Mei, Han, Nekrutenko, Anton, Martin, Darren P, Kosakovsky Pond, Sergei L · 2022
23. Mitochondrial retrograde control of transcription evolves with respiratory stress, metabolic adaptation, and virulence in budding yeasts
    Łabędzka-Dmoch, Karolina, Bui, Thi Hoang Diu, Piątkowski, Jakub, Dilling, Marta, Jagiełło, Paulina, Kabza, Wiktoria, Golik, Paweł · 2026 · Molecular Biology and Evolution