Tandem repeats finder: a program to analyze DNA sequences

Benson, G.·1999·Nucleic Acids Research

DOI 10.1093/nar/27.2.573

Cited by (1,019)

Items 901–1,000 of 1,019

Next-Generation Sequencing Reveals the Impact of Repetitive DNA Across Phylogenetically Closely Related Genomes of Orobanchaceae
Mathieu Piednoël, Andre J. Aberer, Gerald M. Schneeweiss, Jir̆ı́ Macas, Petr Novák, Heidrun Gundlach, Eva M. Temsch, Susanne S. Renner · 2012 · Molecular Biology and Evolution
Improved repeat identification and masking in Dipterans
Christopher D. Smith, R. C. Edgar, Mark D. Yandell, Douglas R. Smith, S Celniker, Eugene Wimberly Myers, Gary H. Karpen · 2006 · Gene
The More the Merrier: Recent Hybridization and Polyploidy in Cardamine
Terezie M. Mandáková, Aleš Kovařı́k, Judita Zozomová‐Lihová, Rie Shimizu‐Inatsugi, Kentaro K. Shimizu, Klaus Mummenhoff, Karol Marhold, Martin A. Lysák · 2013 · The Plant Cell
Genome sequence of ground tit Pseudopodoces humilis and its adaptation to high altitude
Qingle Cai, Xiaoju Qian, Yongshan Lang, Yadan Luo, Jiaohui Xü, Shengkai Pan, Yuanyuan Hui, Caiyun Gou, Yue Cai, Meirong Hao et al. · 2013 · Genome biology
Insights into beta cell regeneration for diabetes via integration of molecular landscapes in human insulinomas
Huan Wang, Aaron S. Bender, Peng Wang, Esra Karaköse, William B. Inabnet, Steven K. Libutti, Andrew Arnold, Luca Lambertini, Micheal Stang, Herbert Chen et al. · 2017 · Nature Communications
Phage Genome Annotation Using the RAST Pipeline
Katelyn A. McNair, Ramy Karam Aziz, Gordon D. Pusch, Ross Overbeek, Bas E. Dutilh, Robert Alan Edwards · 2017 · Methods in molecular biology
Rates of Mutation and Recombination in Siphoviridae Phage Genome Evolution over Three Decades
Anne Kupczok, Horst Neve, Kun D. Huang, Marc P. Hoeppner, Knut J. Heller, Charles M. A. P. Franz, Tal Dagan · 2018 · Molecular Biology and Evolution
Genome and Transcriptome Sequencing of the Astaxanthin-Producing Green Microalga,Haematococcus pluvialis
Qiulan Luo, Chao Bian, Ming Tao, Yu Shu Huang, Yihong Zheng, Yunyun Lv, Jia Li, Chaogang Wang, Xinxin You, Bin Jia et al. · 2018 · Genome Biology and Evolution
High-coverage genomes to elucidate the evolution of penguins
Hailin Pan, Theresa L. Cole, Xupeng Bi, Miaoquan Fang, Chengran Zhou, Zhengtao Yang, Daniel T. Ksepka, Tom Hart, Juan L. Bouzat, Lisa S. Argilla et al. · 2019 · GigaScience
Lipid and DHA-production in Aurantiochytrium sp. – Responses to nitrogen starvation and oxygen limitation revealed by analyses of production kinetics and global transcriptomes
Tonje Marita Bjerkan Heggeset, Helga Ertesvåg, Bin Liu, Trond Erling Ellingsen, Ôlav Vadstein, Inga Marie Aasen · 2019 · Scientific Reports
Complex Physical Structure of Complete Mitochondrial Genome of Quercus acutissima (Fagaceae): A Significant Energy Plant
Dan Liu, Haili Guo, Jingle Zhu, Kai Qu, Ying Chen, Yingtian Guo, Ping Ding, Haiping Yang, Ting Xu, Jing Qi et al. · 2022 · Genes
Drechslerella stenobrocha genome illustrates the mechanism of constricting rings and the origin of nematode predation in fungi
Keke Liu, Weiwei Zhang, Yiling Lai, Meichun Xiang, Xiuna Wang, Xinyu Zhang, Xingzhong Liu · 2014 · BMC Genomics
Novel immunoglobulin superfamily gene cluster, mapping to a region of human chromosome 17q25, linked to psoriasis susceptibility
Rebecca A. Speckman, Jil Daw, Cynthia A. Helms, Shenghui Duan, Li Hua Cao, Patricia Taillon‐Miller, Pui–Yan Kwok, Alan Menter, Anne M. Bowcock · 2003 · Human Genetics
The Core and Accessory Genomes of Burkholderia pseudomallei: Implications for Human Melioidosis
Siew Hoon Sim, Yiting Yu, Chi Ho Lin, Radha Krishna Murthy Karuturi, Vanaporn Wuthiekanun, Apichai Tuanyok, Hui Hoon Chua, Catherine Ong, Suppiah Paramalingam Sivalingam, Gladys Gek Yen Tan et al. · 2008 · PLoS Pathogens
PredcircRNA: computational classification of circular RNA from other long non-coding RNA using hybrid features
Xiaoyong Pan, Kai Xiong · 2015 · Molecular BioSystems
The genome of the Tiger Milk mushroom, Lignosus rhinocerotis, provides insights into the genetic basis of its medicinal properties
Yeannie H. Y. Yap, Yit‐Heng Chooi, Mohd Firdaus‐Raih, Shin Yee Fung, Szu Ting Ng, Chon-Seng Tan, Nget‐Hong Tan · 2014 · BMC Genomics
The Complete Mitochondrial Genome of Tupaia belangeri and the Phylogenetic Affiliation of Scandentia to Other Eutherian Orders
Jürgen Schmitz, Martina Ohme, Hans Zischler · 2000 · Molecular Biology and Evolution
Reduced purifying selection prevails over positive selection in human copy number variant evolution
Duc-Quang Nguyen, Caleb Webber, Jayne Y. Hehir‐Kwa, Rolph Pfundt, Joris Andre Veltman, Chris Paul Ponting · 2008 · Genome Research
The draft genome of a socially polymorphic halictid bee, Lasioglossum albipes
Sarah D. Kocher, Cai Li, Wei Cheng Yang, Hao Tan, Soojin V. Yi, Xingyu Yang, Hopi E. Hoekstra, Guojie Zhang, Naomi E. Pierce, Douglas W. Yu · 2013 · Genome biology
Hybrids of RNA viruses and viroid-like elements replicate in fungi
Marco Forgia, Beatriz Navarro, Stefania Daghino, Amelia Cervera, Andreas Gisel, Silvia Perotto, Dilzara N. Aghayeva, Mary F. Akinyuwa, Emanuela Gobbi, Ivan N. Zheludev et al. · 2023 · Nature Communications
Comparative and genetic analysis of the four sequenced Paenibacillus polymyxa genomes reveals a diverse metabolism and conservation of genes relevant to plant-growth promotion and competitiveness
Alexander W. Eastman, David E. Heinrichs, Ze‐Chun Yuan · 2014 · BMC Genomics
Exome sequencing reveals germline NPAT mutation as a candidate risk factor for Hodgkin lymphoma
Silva Saarinen, Mervi Aavikko, Kristiina Aittomäki, Virpi Launonen, Rainer Lehtonen, Kaarle Franssila, Heli J. Lehtonen, Eevi Kaasinen, Peter Broderick, Jussi Tarkkanen et al. · 2011 · Blood
High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome
Gianni Liti, Alex N. Nguyen Ba, Martin Blythe, Carolin A. Müller, Anders Bergström, Francisco A. Cubillos, Felix Dafhnis-Calas, Shima Khoshraftar, Sunir Malla, Neel Mehta et al. · 2013 · BMC Genomics
The fire ant social chromosome supergene variant Sb shows low diversity but high divergence from SB
Rodrigo Pracana, Anurag Priyam, Ilya Levantis, Richard A. Nichols, Yannick Wurm · 2017 · Molecular Ecology
Development and application of Multiple-Locus Variable Number of tandem repeat Analysis (MLVA) to subtype a collection of Listeria monocytogenes
Mary Murphy, Deborah Corcoran, James F. Buckley, Micheál O'Mahony, Paul Whyte, Séamus Fanning · 2006 · International Journal of Food Microbiology
Complete chloroplast genome sequence of a major economic species, Ziziphus jujuba (Rhamnaceae)
Qiuyue Ma, Shuxian Li, Changwei Bi, Zhaodong Hao, Congrui Sun, Ning Ye · 2016 · Current Genetics
Plastomes of Mimosoideae: structural and size variation, sequence divergence, and phylogenetic implication
Yinhuan Wang, Xiao‐Jian Qu, Siyun Chen, De-Zhu Li, Ting‐Shuang Yi · 2017 · Tree Genetics & Genomes
NGSEP3: accurate variant calling across species and sequencing protocols
Daniel Tello, Juanita Gil, Cristian D Loaiza, John Jaime Riascos, Nicolás Cardozo, Jorge Duitama · 2019 · Bioinformatics
High‐quality chromosome‐level genomes of two tilapia species reveal their evolution of repeat sequences and sex chromosomes
Wenjing Tao, Luohao Xu, Lin Qing Zhao, Zexian Zhu, Xin Wu, Qianwen Min, Deshou Wang, Qi Zhou · 2020 · Molecular Ecology Resources
A towering genome: Experimentally validated adaptations to high blood pressure and extreme stature in the giraffe
Chang Liu, Jianbo Gao, Xinxin Cui, Zhipeng Li, Lei Chen, Yuan Yuan, Yaolei Zhang, Liangwei Mei, Lan Zhao, Dan Cai et al. · 2021 · Science Advances
Hypervariable 3′ UTR region of plant LTR-retrotransposons as a source of novel satellite repeats
Jir̆ı́ Macas, Andrea Koblížková, Alice Navrátilová, Pavel Neumann · 2009 · Gene
Allelic segregation and independent assortment in T. brucei crosses: Proof that the genetic system is Mendelian and involves meiosis
Annette MacLeod, Alison Tweedie, Sarah D. Mclellan, Sonya J. Taylor, Anneli Cooper, Lindsay Sweeney, C. Michael R. Turner, Andy Tait · 2005 · Molecular and Biochemical Parasitology
The tempo and mode of molecular evolution of Mycobacterium tuberculosis at patient-to-patient scale
Anita C. Schürch, Kristin Kremer, Albert Kiers, Olaf Daviena, Martin Johan Boeree, Roland J. Siezen, Noel H. Smith, Dick van Soolingen · 2009 · Infection Genetics and Evolution
A Genetic Linkage Map of Atlantic Halibut (Hippoglossus hippoglossus L.)
Darrin Reid, Cheryl-Anne Smith, Melissa Rommens, Brian Blanchard, Debbie J. Martin-Robichaud, Michael Reith · 2007 · Genetics
The Mitochondrial Genome of Paraminabea aldersladei (Cnidaria: Anthozoa: Octocorallia) Supports Intramolecular Recombination as the Primary Mechanism of Gene Rearrangement in Octocoral Mitochondrial Genomes
Stephanie A. Brockman, Catherine S. McFadden · 2012 · Genome Biology and Evolution
Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii
Asis Khan, Ulrike Böhme, Krystyna A. Kelly, Ellen Adlem, Karen L. Brooks, Mark Simmonds, Karen Mungall, Michael Andrew Quail, Claire Arrowsmith, Tracey Chillingworth et al. · 2006 · Genome Research
A Comprehensive Nuclear Receptor Network for Breast Cancer Cells
Ralf Kittler, Jie H. S. Zhou, Sujun Hua, Lijia Ma, Yuwen Liu, Elisha Pendleton, Chao Cheng, Mark Gerstein, Kevin P. White · 2013 · Cell Reports
The Complete Chloroplast Genome Sequences of Six Rehmannia Species
Shuyun Zeng, Tao Zhou, Kai Han, Yanci Yang, Jian‐Hua Zhao, Zhan‐Lin Liu · 2017 · Genes
A telomere-to-telomere assembly of Oscheius tipulae and the evolution of rhabditid nematode chromosomes
Pablo Manuel González De la Rosa, Marian L. Thomson, Urmi H. Trivedi, Alan Tracey, Sophie Tandonnet, Mark Blaxter · 2020 · G3 Genes Genomes Genetics
Comparative genome anatomy reveals evolutionary insights into a unique amphitriploid fish
Yang Wang, Xi‐Yin Li, Wenjie Xu, Kun Wang, Bin Wu, Meng Xu, Yan Chen, Li-Jun Miao, Zhongwei Wang, Zhi Li et al. · 2022 · Nature Ecology & Evolution
Seasonal Cholera from Multiple Small Outbreaks, Rural Bangladesh
Oscar Colin Stine, Munirul Alam, Li Tang, Gopinath Balakrish Nair, Abdullah Siddique, Shah M. Faruque, Anwar Huq, Rita R. Colwell, R. Bradley Sack, John Glenn Morris · 2008 · Emerging infectious diseases
The Mitochondrial Genome of a Deep-Sea Bamboo Coral (Cnidaria, Anthozoa, Octocorallia, Isididae): Genome Structure and Putative Origins of Replication Are Not Conserved Among Octocorals
Mercer R. Brugler, Scott C. France · 2008 · Journal of Molecular Evolution
Spectrum ofCLN6mutations in variant late infantile neuronal ceroid lipofuscinosis
Julie D. Sharp, Ruth B. Wheeler, Keith A. Parker, R M Gardiner, Ruth Elizabeth Williams, Sara Mole · 2003 · Human Mutation
Comparative genome analysis of Mycoplasma pneumoniae
Li Xiao, Travis Ptacek, John D. Osborne, Donna M. Crabb, Warren L. Simmons, Elliot J. Lefkowitz, Ken B. Waites, Thomas Prescott Atkinson, Kevin F. Dybvig · 2015 · BMC Genomics
Genetic risk and transcriptional variability of amyloid precursor protein in Alzheimer's disease
Nathalie Brouwers, Kristel Sleegers, Sebastiaan Engelborghs, Veerle Bogaerts, Sally Serneels, K. Kamali, Ellen Corsmit, Evelyn De Leenheir, Jean‐Jacques Martin, Peter Paul De Deyn et al. · 2006 · Brain
Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses
Long Li, Qianqian Zhu, Xin He, Saurabh Sinha, Marc S. Halfon · 2007 · Genome biology
Inferring short tandem repeat variation from paired-end short reads
Minh Duc Cao, Edward Tasker, Kai Willadsen, Michael Imelfort, Sailaja Vishwanathan, Sridevi Sureshkumar, Sureshkumar Balasubramanian, Mikael Bodén A · 2013 · Nucleic Acids Research
Allium telomeres unmasked: the unusual telomeric sequence ( CTCGGTTATGGG ) n is synthesized by telomerase
Petr Fajkus, Vratislav Peška, Zdeňka Sitová, Jana Fulnečková, Martina Dvořáčková, Roman Gogela, Eva Sýkorová, Jan Hapala, Jiřı́ Fajkus · 2015 · The Plant Journal
Comparative analysis of the complete chloroplast genome sequences in psammophytic Haloxylon species (Amaranthaceae)
Wenpan Dong, Chao Xu, Delu Li, Xiaobai Jin, Ruili Li, Qi Lu, Zhili Suo · 2016 · PeerJ
The chloroplast genomes of Bryopsis plumosa and Tydemania expeditiones (Bryopsidales, Chlorophyta): compact genomes and genes of bacterial origin
Frédérik Leliaert, Juan Manuel Lopez-Bautista · 2015 · BMC Genomics
First Reported Case of Cryptococcus gattii in the Southeastern USA: Implications for Travel-Associated Acquisition of an Emerging Pathogen
Edmond J. Byrnes, Wenjun Li, Yonathan Lewit, John R. Perfect, Dee A. Carter, Gary M. Cox, Joseph Heitman · 2009 · PLoS ONE
Sequencing of a Wild Apple (Malus baccata) Genome Unravels the Differences Between Cultivated and Wild Apple Species Regarding Disease Resistance and Cold Tolerance
Xilong Chen, Shiming Li, Dong Zhang, Mingyu Han, Xin Jin, Caipin Zhao, Songbo Wang, Libo Xing, Juanjuan Ma, Jingjing Ji et al. · 2019 · G3 Genes Genomes Genetics
Whole-genome resequencing of Osmanthus fragrans provides insights into flower color evolution
Hongguo Chen, Xiangling Zeng, Jie Yang, Xuan Cai, Yumin Shi, Riru Zheng, Zhenqi Wang, Junyi Liu, Xinxin Yi, Siwei Xiao et al. · 2021 · Horticulture Research
Complete Plastid and Mitochondrial Genomes of Aeginetia indica Reveal Intracellular Gene Transfer (IGT), Horizontal Gene Transfer (HGT), and Cytoplasmic Male Sterility (CMS)
Kyoung Su Choi, SeonJoo Park · 2021 · International Journal of Molecular Sciences
The Cymbidium genome reveals the evolution of unique morphological traits
Ye Ai, Zhen Li, Weihong Sun, Juan Chen, Diyang Zhang, Liang Ma, Qinghua Zhang, Mingkun Chen, Qing-Dong Zheng, Jiang-Feng Liu et al. · 2021 · Horticulture Research
Assembly and comparative analysis of the complete mitochondrial genome of Bupleurum chinense DC
Yonggang Qiao, Xinrui Zhang, Zheng Li, Yun Chun Song, Zhe Sun · 2022 · BMC Genomics
Deep-sea hydrothermal vent bacteria related to human pathogenic Vibrio species
Nur A. Hasan, Christopher J. Grim, Erin K. Lipp, Irma Nelly Gutierrez Rivera, Jongsik Chun, Bradd J. Haley, Elisa Taviani, Seon Young Choi, Mozammel Hoq, A. Christine Munk et al. · 2015 · Proceedings of the National Academy of Sciences
Repetitive DNA is associated with centromeric domains in Trypanosoma brucei but not Trypanosoma cruzi
Samson O. Obado, Christopher Bot, Daniel Nilsson, Björn Andersson, John M. Kelly · 2007 · Genome biology
Human mitochondrial transcription factor B1 as a modifier gene for hearing loss associated with the mitochondrial A1555G mutation
Yelena Bykhovskaya · 2004 · Molecular Genetics and Metabolism
Comparison of Molecular Typing Methods for the Differentiation of Salmonella Foodborne Pathogens
Steven L. Foley, Shaohua Zhao, Robert D. Walker · 2007 · Foodborne Pathogens and Disease
Genome Analysis of a Glossina pallidipes Salivary Gland Hypertrophy Virus Reveals a Novel, Large, Double-Stranded Circular DNA Virus
Adly M. M. Abd‐Alla, François Cousserans, Andrew Gordon Parker, Johannes A. Jehle, Nicolas J. Parker, Just M. Vlak, ALAN S. ROBINSON, Max Bergoin · 2008 · Journal of Virology
Genome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions
Joana Caldeira Fernandes da Silva, Emmanuel Cornillot, Carrie L McCracken, Sahar Usmani‐Brown, Ankit Dwivedi, Olukemi O. Ifeonu, Jonathan Crabtree, Hanzel T. Gotia, Azan Z. Virji, Christelle Reynès et al. · 2016 · Scientific Reports
Comprehensive analysis of indels in whole-genome microsatellite regions and microsatellite instability across 21 cancer types
Akihiro Fujimoto, Masashi Fujita, Takanori Hasegawa, Jing Hao Wong, Kazuhiro Maejima, Aya Oku‐Sasaki, Kaoru Nakano, Yuichi Shiraishi, Satoru Miyano, Seiya Imoto et al. · 2020 · Genome Research
Complete sequencing and comparative analyses of the pepper (Capsicum annuum L.) plastome revealed high frequency of tandem repeats and large insertion/deletions on pepper plastome
Yeong Deuk Jo, Jongsun Park, Jung‐Eun Kim, Wonho Song, Cheol‐Goo Hur, Yong‐Hwan Lee, Byoung‐Cheorl Kang · 2010 · Plant Cell Reports
Structure and dynamics of stock market in times of crisis
Longfeng Zhao, Wei Li, Xu Cai · 2015 · Physics Letters A
A chromosomal-level genome assembly for the giant African snail Achatina fulica
Yun-Hai Guo, Yi Zhang, Qin Liu, Yun Huang, Guang-Yao Mao, Zhi-Yuan Yue, Eniola Micheal Abe, Jian Li, Zhongdao Wu, Shi‐Zhu Li et al. · 2019 · GigaScience
Which factors contribute most to genome size variation within angiosperms?
Dandan Wang, Zeyu Zheng, Ying Li, Hongyin Hu, Zhenyue Wang, Xin Du, Shangzhe Zhang, Mingjia Zhu, Longwei Dong, Guangpeng Ren et al. · 2021 · Ecology and Evolution
Biodegradation of chlortetracycline by Bacillus cereus LZ01: Performance, degradative pathway and possible genes involved
Sinan Zhang, Jihong Wang · 2022 · Journal of Hazardous Materials
A deep population reference panel of tandem repeat variation
Helyaneh Ziaei Jam, Yang Li, Ross DeVito, Nima Mousavi, Nichole Ma, Ibra Lujumba, Yagoub Adam, Mikhail Maksimov, Bonnie B. Huang, Egor Dolzhenko et al. · 2023 · Nature Communications
Near telomere-to-telomere genome of the model plant Physcomitrium patens
Guiqi Bi, Shijun Zhao, Jiawei Yao, Huan Wang, Mengkai Zhao, Yuanyuan Sun, Xueren Hou, Fabian B. Haas, Deepti Varshney, Michael J. Prigge et al. · 2024 · Nature Plants
Comprehensive EST analysis of Atlantic halibut (Hippoglossus hippoglossus), a commercially relevant aquaculture species
Susan E. Douglas, Leah C. Knickle, Jennifer Kimball, Michael Reith · 2007 · BMC Genomics
Comparison of morphological and genetic analyses reveals cryptic divergence and morphological plasticity in Stylophora (Cnidaria, Scleractinia)
Fabrizio Stefani, Francesca Benzoni, Sung‐Yin Yang, Michel Pichon, Paolo Galli, Chun Chen · 2011 · Coral Reefs
Tandem repeat regions within the Burkholderia pseudomallei genome and their application for high resolution genotyping
Jana M. U’Ren, James M. Schupp, Talima Pearson, Heidie Hornstra, Christine L Clark Friedman, Kimothy L. Smith, Rebecca Leadem Daugherty, Shane D. Rhoton, Ben Leadem, Shalamar Georgia et al. · 2007 · BMC Microbiology
Evolutionary Analysis of Amino Acid Repeats across the Genomes of 12 Drosophila Species
Melanie A. Huntley, Andrew G. Clark · 2007 · Molecular Biology and Evolution
Fine mapping of Rf3 and Rf4 fertility restorer loci of WA-CMS of rice (Oryza sativa L.) and validation of the developed marker system for identification of restorer lines
P. Balaji Suresh, B. Srikanth, V. Hemanth Kishore, I. Subhakara Rao, Lakshminarayana Reddy Vemireddy, N. Dharika, Raman Meenakshi Sundaram, Mugalodi S. Ramesha, K. R. S. Sambasiva Rao, Basavaraj C. Viraktamath et al. · 2012 · Euphytica
Assessing the genome level diversity of Listeria monocytogenes from contaminated ice cream and environmental samples linked to a listeriosis outbreak in the United States
Yi Chen, Yan Luo, Phillip E. Curry, Ruth Timme, David C. Melka, Matthew Doyle, M.E. Parish, Thomas S. Hammack, Marc W. Allard, Eric W. Brown et al. · 2017 · PLoS ONE
Whole genome sequence of Auricularia heimuer (Basidiomycota, Fungi), the third most important cultivated mushroom worldwide
Yuan Yuan, Fang Wu, Jing Si, Yi-Fan Zhao, Yu‐Cheng Dai · 2017 · Genomics
The human telomerase gene: complete genomic sequence and analysis of tandem repeat polymorphisms in intronic regions
Sun‐Hee Leem, Arturo Londoño‐Vallejo, Jung-Hyun Kim, Hung Bui, Emmanuel Tubacher, Gregory G. Solomon, Jung‐Eun Park, Izumi Horikawa, Natalay Kouprina, J. Carl Barrett et al. · 2002 · Oncogene
A chromosome‐level genome assembly reveals the genetic basis of cold tolerance in a notorious rice insect pest, Chilo suppressalis
Weihua Ma, Xianxin Zhao, Chuanlin Yin, Fan Jiang, Xiaoyong Du, Taiyu Chen, Qinghua Zhang, Lin Qiu, Hongxing Xu, J. Joe Hull et al. · 2019 · Molecular Ecology Resources
The genome of a wild Medicago species provides insights into the tolerant mechanisms of legume forage to environmental stress
Tianzuo Wang, Lifei Ren, Caihong Li, Di Zhang, Xiuxiu Zhang, Gang Zhou, Dan Gao, Rujin Chen, Yuhui Chen, Zhaolan Wang et al. · 2021 · BMC Biology
A contiguous de novo genome assembly of sugar beet EL10 ( Beta vulgaris L.)
J. Mitchell McGrath, Andrew Funk, Paul J. Galewski, Shujun Ou, Belinda Townsend, Karen W. Davenport, Hajnalka E. Daligault, Shannon L. Johnson, Joyce Lee, Alex R. Hastie et al. · 2022 · DNA Research
Two telomere-to-telomere gapless genomes reveal insights into Capsicum evolution and capsaicinoid biosynthesis
Weikai Chen, Xiangfeng Wang, Jie Sun, Xinrui Wang, Zhangsheng Zhu, Dilay Hazal Ayhan, Shu Yi, Ming Yan, Lili Zhang, Meng Tan et al. · 2024 · Nature Communications
Telomere-to-telomere Citrullus super-pangenome provides direction for watermelon breeding
Yilin Zhang, Mingxia Zhao, Jingsheng Tan, Minghan Huang, Xiao Chu, Yan Li, Xue Han, Taohong Fang, Yao Tian, Robert L. Jarret et al. · 2024 · Nature Genetics
Tandem repeats in the CpG islands of imprinted genes
Barbara Hutter, Volkhard Helms, Martina Paulsen · 2006 · Genomics
Review of the Application of Modern Cytogenetic Methods (FISH/GISH) to the Study of Reticulation (Polyploidy/Hybridisation)
Michael Chester, Andrew Rowland Leitch, Pamela S. Soltis, Pamela S. Soltis · 2010 · Genes
Linkage of 35S and 5S rRNA genes in Artemisia (family Asteraceae): first evidence from angiosperms
Sònia Garcia, K. Yoong Lim, Michael Chester, Teresa Garnatje, Jaume Pellicer, Joan Vallès, Andrew Rowland Leitch, Aleš Kovařı́k · 2008 · Chromosoma
Genomic Features of the Human Dopamine Transporter Gene and Its Potential Epigenetic States: Implications for Phenotypic Diversity
Elena Shumay, Joanna S. Fowler, Nora D. Volkow · 2010 · PLoS ONE
Comparative sequence analysis of the potato cyst nematode resistance locus H1 reveals a major lack of co-linearity between three haplotypes in potato (Solanum tuberosum ssp.)
Anna Finkers‐Tomczak, Erin H Bakker, Jan de Boer, Edwin van der Vossen, Ute Achenbach, T.M. Golas, Suwardi Suryaningrat, Geert Smant, Jaap Bakker, Aska Goverse · 2010 · Theoretical and Applied Genetics
The complete genome sequence of Clostridium difficile phage ϕC2 and comparisons to ϕCD119 and inducible prophages of CD630
Shan Goh, Peh Fern Ong, Keang Peng Song, Thomas Victor Riley, Barbara Jane Chang · 2007 · Microbiology
Raphidocelis subcapitata (=Pseudokirchneriella subcapitata) provides an insight into genome evolution and environmental adaptations in the Sphaeropleales
S. Suzuki, Haruyo Yamaguchi, Nobuyoshi Nakajima, Masanobu Kawachi · 2018 · Scientific Reports
Genome-wide analysis of tandem repeats in Tribolium castaneum genome reveals abundant and highly dynamic tandem repeat families with satellite DNA features in euchromatic chromosomal arms
Martina Pavlek, Yevgeniy Gelfand, Miroslav Plohl, Nevenka Meštrović · 2015 · DNA Research
The Arctic charr (Salvelinus alpinus) genome and transcriptome assembly
Kris A. Christensen, Eric B. Rondeau, David R. Minkley, Jong S. Leong, Cameron M. Nugent, Roy G. Danzmann, Moira M. Ferguson, Agnieszka Stadnik, Robert H. Devlin, Robin Muzzerall et al. · 2018 · PLoS ONE · Retracted
Whole-genome sequencing provides insights into the genetic diversity and domestication of bitter gourd (Momordica spp.)
Junjie Cui, Yanhui Yang, Shaobo Luo, Le Wang, Rukui Huang, Qingfang Wen, Xiaoxia Han, Miao NanSheng, Jiaowen Cheng, Ziji Liu et al. · 2020 · Horticulture Research
The Phoebe genome sheds light on the evolution of magnoliids
Shipin Chen, Weihong Sun, Yuan-Fang Xiong, Yu-Ting Jiang, Xuedie Liu, Xing‐Yu Liao, Diyang Zhang, Shu-Zhen Jiang, Yu Li, Bin Liu et al. · 2020 · Horticulture Research
A complete gap-free diploid genome in Saccharum complex and the genomic footprints of evolution in the highly polyploid Saccharum genus
Tianyou Wang, Baiyu Wang, Xiuting Hua, Haibao Tang, Zeyu Zhang, Ruiting Gao, Yiying Qi, Qing Zhang, Gang Wang, Zehuai Yu et al. · 2023 · Nature Plants
Gene identification and proteomic analysis of the esterases of the cotton bollworm, Helicoverpa armigera
Mark G. Teese, Peter M. Campbell, Colin Stephen Scott, Karl H. J. Gordon, Adam G. Southon, Daniel Hovan, Charles Robin, Robyn J. Russell, John Graham Oakeshott · 2009 · Insect Biochemistry and Molecular Biology
A Comparative Analysis of the Chloroplast Genomes of Four Salvia Medicinal Plants
Conglian Liang, Lei Wang, Juan Lei, Baozhong Duan, Weisi Ma, Shuiming Xiao, Haijun Qi, Zhen Wang, Yaoqi Liu, Xiaofeng Shen et al. · 2019 · Engineering
DNA fingerprinting of Shiga-toxin producing Escherichia coli O157 based on Multiple-Locus Variable-Number Tandem-Repeats Analysis (MLVA)
Bjørn-Arne Lindstedt, Even Heir, Elisabet Gjernes, Traute Vardund, Georg Kapperud · 2003 · Annals of Clinical Microbiology and Antimicrobials
A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA modification
Xue‐hai Liang, Shai Uliel, Avraham Hury, Sarit Barth, Tirza Doniger, Ron Unger, Shulamit Michaeli · 2005 · RNA
Tandem repeat variation in human and great ape populations and its impact on gene expression divergence
Tugce Bilgin Sonay, Tiago Carvalho, Mark D. Robinson, Maja P. Greminger, Michael Krützen, David Comas, Gareth Highnam, David Mittelman, Andrew J. Sharp, Tomàs Marquès‐Bonet et al. · 2015 · Genome Research