Tandem repeats finder: a program to analyze DNA sequences

Benson, G.·1999·Nucleic Acids Research

Cited by (1,019)

Items 501–600 of 1,019

  1. Searching for statistically significant regulatory modules
    Timothy L. Bailey, William Stafford Noble · 2003 · Bioinformatics
  2. Discovery of a Novel Single-Stranded DNA Virus from a Sea Turtle Fibropapilloma by Using Viral Metagenomics
    Terry Fei Fan Ng, Charles A. Manire, Kelly Borrowman, Tammy Langer, Llewellyn M. Ehrhart, Mya Breitbart · 2008 · Journal of Virology
  3. Genetic diversity and host plant preferences revealed by simple sequence repeat and mitochondrial markers in a population of the arbuscular mycorrhizal fungus Glomus intraradices
    Daniel Croll, Lukas Wille, Hannes Gamper, Natarajan Mathimaran, Peter J. Lammers, Nicolas Corradi, Ian R. Sanders · 2008 · New Phytologist
  4. The genomes of pecan and Chinese hickory provide insights into Carya evolution and nut nutrition
    Youjun Huang, Lihong Xiao, Zhongren Zhang, Rui Zhang, Zhengjia Wang, Chunying Huang, Ren Huang, Yumeng Luan, Tongqiang Fan, Jianhua Wang et al. · 2019 · GigaScience
  5. The mitochondrial genomes of the human hookworms, Ancylostoma duodenale and Necator americanus (Nematoda: Secernentea)
    Min Hu, Neil B. Chilton, Robin B. Gasser · 2002 · International Journal for Parasitology
  6. The Vertebrate Genome Annotation (Vega) database
    Jennifer L. Ashurst · 2004 · Nucleic Acids Research
  7. Variable Glutamine-Rich Repeats Modulate Transcription Factor Activity
    Rita Gemayel, Sreenivas Chavali, Ksenia Pougach, Matthieu Legendre, Bo Zhu, Steven Boeynaems, Elisa van der Zande, Kris Gevaert, Frédéric Rousseau, Joost W. H. Schymkowitz et al. · 2015 · Molecular Cell
  8. Novel ENAM mutation responsible for autosomal recessive amelogenesis imperfecta and localised enamel defects
    Thomas C. Hart, P S Hart, M C Gorry, M D Michalec, O H Ryu, C Uygur, Didem Özdemır, S Firatli, Gamze Aren, E Firatli · 2003 · Journal of Medical Genetics
  9. Genome sequencing of high-penicillin producing industrial strain of Penicillium chrysogenum
    Fuqiang Wang, Jun Zhong, Ying Zhao, Jingfa Xiao, Jing Liu, Meng Dai, Guizhen Zheng, Li Zhang, Jun Myoung Yu, Jiayan Wu et al. · 2014 · BMC Genomics
  10. Characterization and Repeat Analysis of the Compact Genome of the Freshwater Pufferfish Tetraodon nigroviridis
    Hugues Roest Crollius, Olivier Jaillon, Corinne Da Silva, Catherine Ozouf‐Costaz, Cécile Fizames, Cécile Fischer, Laurence Bouneau, Alain Billault, Françis Quétier, William Saurin et al. · 2000 · Genome Research
  11. Single-molecule sequencing and Hi-C-based proximity-guided assembly of amaranth (Amaranthus hypochondriacus) chromosomes provide insights into genome evolution
    Damien J. Lightfoot, David E. Jarvis, Thiruvarangan Ramaraj, R. Lee, Eric N. Jellen, Peter J. Maughan · 2017 · BMC Biology
  12. The genome of the golden apple snail Pomacea canaliculata provides insight into stress tolerance and invasive adaptation
    Conghui Liu, Yan Zhang, Yuwei Ren, Hengchao Wang, Shuqu Li, Fan Jiang, Lijuan Yin, Xi Qiao, Guojie Zhang, Wanqiang Qian et al. · 2018 · GigaScience
  13. Detecting Expansions of Tandem Repeats in Cohorts Sequenced with Short-Read Sequencing Data
    Rick M. Tankard, Mark F. Bennett, Peter Degorski, Martin Bruce Delatycki, Paul J. Lockhart, Melanie Bahlo · 2018 · The American Journal of Human Genetics
  14. Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing Study
    Jonathan Foox, Scott W. Tighe, Charles M. Nicolet, Justin M. Zook, Marta S. Byrska‐Bishop, Wayne E. Clarke, Michael M. Khayat, Medhat Mahmoud, Phoebe K. Laaguiby, Zachary T. Herbert et al. · 2021 · Nature Biotechnology
  15. Comparative genomics of the major fungal agents of human and animal Sporotrichosis: Sporothrix schenckii and Sporothrix brasiliensis
    Marcus de Melo Teixeira, Luiz Gonzaga Paula de Almeida, Paula Helena Kubitschek-Barreira, Fernanda Lourenço Alves, Érika Seki Kioshima, Ana Karina Rodrigues Abadio, Larissa Fernandes, Lorena da Silveira Derengowski, Karen Spadari Ferreira, Rangel Celso Souza et al. · 2014 · BMC Genomics
  16. Human-specific tandem repeat expansion and differential gene expression during primate evolution
    Arvis Sulovari, Ruiyang Li, Peter A. Audano, David Porubskỳ, Mitchell Robert Vollger, Glennis A. Logsdon, Wesley C. Warren, Alex A. Pollen, Mark Chaisson, Evan E. Eichler et al. · 2019 · Proceedings of the National Academy of Sciences
  17. Samplot: a platform for structural variant visual validation and automated filtering
    Jonathan R. Belyeu, Murad Chowdhury, Joseph Brown, Brent S. Pedersen, Michael J. Cormier, Aaron R. Quinlan, Ryan M. Layer · 2021 · Genome biology
  18. Sequence and Organization of the Neodiprion lecontei Nucleopolyhedrovirus Genome
    Hilary A. M. Lauzon, Christopher J. Lucarotti, Peter John Krell, Qili Feng, Arthur Retnakaran, Basil M. Arif · 2004 · Journal of Virology
  19. A locus for autosomal dominant keratoconus maps to human chromosome 3p14–q13
    Francesco Brancati, Enza Maria Valente, Anna Sárközy, János Fehér, Marco Castori, P Del Duca, Rita Mingarelli, Antonio Pizzuti, Bruno Dallapiccola · 2004 · Journal of Medical Genetics
  20. Structural forms of the human amylase locus and their relationships to SNPs, haplotypes and obesity
    Christina L. Usher, Robert E. Handsaker, Tõnu Esko, Marcus A. Tuke, Michael N. Weedon, Alex R. Hastie, Han Cao, Jennifer E Moon, Seva Kashin, Christian Fuchsberger et al. · 2015 · Nature Genetics
  21. Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species
    Shengbin Li, Bo Li, Cheng Cheng, Zijun Xiong, Qingbo Liu, Jianghua Lai, Hannah V. Carey, Qiong Zhang, Haibo Zheng, Shuguang Wei et al. · 2014 · Genome biology
  22. The genome draft of coconut (Cocos nucifera)
    Yong Xiao, Pengwei Xu, Haikuo Fan, Luc Baudouin, Wei Xia, Stéphanie Bocs, Junyang Xu, Qiong Li, Anping Guo, Lixia Zhou et al. · 2017 · GigaScience
  23. Horizontal gene transfer contributes to virulence and antibiotic resistance of Vibrio harveyi 345 based on complete genome sequence analysis
    Yiqin Deng, Haidong Xu, Youlu Su, Songlin Liu, Liwen Xu, Zhixun Guo, Jinjun Wu, Chang-Hong Cheng, Juan Feng · 2019 · BMC Genomics
  24. The GGC repeat expansion in NOTCH2NLC is associated with oculopharyngodistal myopathy type 3
    Jiaxi Yu, Jianwen Deng, Xueyu Guo, Jingli Shan, Xinghua Luan, Li Hua Cao, Juan Zhao, Meng Yu, Wei Yan Zhang, He Lv et al. · 2021 · Brain
  25. Complex genetic variation in nearly complete human genomes
    Glennis A. Logsdon, Peter Ebert, Peter A. Audano, Mark G. Loftus, David Porubskỳ, Jana Ebler, Feyza Yilmaz, Pille Hallast, Timofey Prodanov, DongAhn Yoo et al. · 2025 · Nature
  26. Frequent somatic transfer of mitochondrial DNA into the nuclear genome of human cancer cells
    Young Seok Ju, José M. C. Tubío, William Mifsud, Beiyuan Fu, Helen Ruth Davies, Manasa Ramakrishna, Yilong Li, Lucy R. Yates, Gunes Gundem, Patrick S. Tarpey et al. · 2015 · Genome Research
  27. Genomic characterization of emergent pseudorabies virus in China reveals marked sequence divergence: Evidence for the existence of two major genotypes
    Chao Ye, Qingzhan Zhang, Zhi‐Jun Tian, Hao Zheng, Kuan Zhao, Fei Liu, Jinchao Guo, Wu Tong, Cheng-Gang Jiang, Shu-Jie Wang et al. · 2015 · Virology
  28. Comparative genome sequencing reveals genomic signature of extreme desiccation tolerance in the anhydrobiotic midge
    Oleg Gusev, Yoshitaka Suetsugu, Richard Cornette, Takeshi Kawashima, Maria D. Logacheva, Alexey S. Kondrashov, Aleksey A. Penin, Rie Hatanaka, Shingo Kikuta, Sachiko Shimura et al. · 2014 · Nature Communications
  29. The genome sequence of the outbreeding globe artichoke constructed de novo incorporating a phase-aware low-pass sequencing strategy of F1 progeny
    Davide Scaglione, Sebastian Reyes-Chin-Wo, Alberto Acquadro, Lutz Froenicke, Ezio Portis, Christopher W. Beitel, Matteo Tirone, Rosario Paolo Mauro, Antonino Lo Monaco, Giovanni Mauromicale et al. · 2016 · Scientific Reports
  30. Whole Genome and Core Genome Multilocus Sequence Typing and Single Nucleotide Polymorphism Analyses of Listeria monocytogenes Isolates Associated with an Outbreak Linked to Cheese, United States, 2013
    Yi Chen, Yan Luo, Heather A. Carleton, Ruth Timme, David C. Melka, Tim Muruvanda, Charles Wang, George Kastanis, Lee S. Katz, Lauren Senty Turner et al. · 2017 · Applied and Environmental Microbiology
  31. Multilocus Short Sequence Repeat Sequencing Approach for Differentiating among Mycobacterium avium subsp. paratuberculosis Strains
    Alongkorn Amonsin, Ling Ling Li, Qing Zhang, John P. Bannantine, Alifiya S. Motiwala, Srinand Sreevatsan, Vivek Kapur · 2004 · Journal of Clinical Microbiology
  32. A Crassostrea gigas Toll-like receptor and comparative analysis of TLR pathway in invertebrates
    Linlin Zhang, Li Li, Guofan Zhang · 2011 · Fish & Shellfish Immunology
  33. The Genome and Linkage Map of the Northern Pike (Esox lucius): Conserved Synteny Revealed between the Salmonid Sister Group and the Neoteleostei
    Eric B. Rondeau, David R. Minkley, Jong S. Leong, Amber Messmer, Johanna R. Jantzen, Kristian R. von Schalburg, Craig Lemon, Nathan H. Bird, Ben F. Koop · 2014 · PLoS ONE
  34. Genetic Mapping of Specific Interactions between Aedes aegypti Mosquitoes and Dengue Viruses
    Thanyalak Fansiri, Albin Fontaine, Laure Diancourt, Valérie Caro, Butsaya Thaisomboonsuk, Jason H. Richardson, Richard G. Jarman, Alongkot Ponlawat, Louis Lambrechts · 2013 · PLoS Genetics
  35. Intraspecific and heteroplasmic variations, gene losses and inversions in the chloroplast genome of Astragalus membranaceus
    Wanjun Lei, Ni DaPeng, Yujun Wang, Junjie Shao, Xin‐Cun Wang, Dan Yang, Jinsheng Wang, Haimei Chen, Chang Liu · 2016 · Scientific Reports
  36. Analysis of the Complete Mitochondrial Genome Sequence of the Diploid Cotton Gossypium raimondii by Comparative Genomics Approaches
    Changwei Bi, Andrew H. Paterson, Xuelin Wang, Yiqing Xu, Dongyang Wu, Yanshu Qu, Anna Jiang, Qiaolin Ye, Ning Ye · 2016 · BioMed Research International
  37. High-quality chromosome-scale assembly of the walnut ( Juglans regia L.) reference genome
    Annarita Marrano, Monica Britton, Paulo A. Zaini, Aleksey V. Zimin, Rachael Workman, Daniela Puiu, Luca Bianco, Erica A. Di Pierro, Brian J Allen, Sandeep Chakraborty et al. · 2020 · GigaScience
  38. Evolution of coastal forests based on a full set of mangrove genomes
    Zi-Wen He, Xiao Feng, Qi-Pian Chen, Liangwei Li, Sen Li, Kai Han, Zixiao Guo, Jia-Yan Wang, Min Liu, Chengcheng Shi et al. · 2022 · Nature Ecology & Evolution
  39. A Novel Class of Pseudoautosomal Region 1 Deletions Downstream of SHOX Is Associated with Léri-Weill Dyschondrosteosis
    Sara Benito‐Sanz, Nicholas Simon Thomas, Céline Huber, Darya Gorbenko del Blanco, Miriam Aza‐Carmona, John Anthony Crolla, Vivienne K. Maloney, Jesús Argente, Ángel Campos‐Barros, Valérie Cormier‐Daire et al. · 2005 · The American Journal of Human Genetics
  40. A Microsatellite Linkage Map of the European Sea Bass Dicentrarchus labrax L.Sequence data from this article have been deposited with the EMBL/GenBank Data Libraries under accession nos. AY383721–383728, AY387399–387406, AY430367–430377, AY453615–453617, AY453620–453628, AY523943–523968, AY529493–529497, AY604983–604992, AY628756–628762, AY636156–636161, AY639097–639109, AY639891–639899, AY694149–694154, and AY714324–714334.
    Dimitry A. Chistiakov, Bart Hellemans, Chris Haley, Andy S Law, Costas S. Tsigenopoulos, Georgios Kotoulas, Daniela Bertotto, Angelo Libertini, Filip A. M. Volckaert · 2005 · Genetics
  41. Completion of the Chloroplast Genomes of Five Chinese Juglans and Their Contribution to Chloroplast Phylogeny
    Yiheng Hu, Keith Woeste, Peng Zhao · 2017 · Frontiers in Plant Science
  42. Genome assembly and characterization of a complex zfBED-NLR gene-containing disease resistance locus in Carolina Gold Select rice with Nanopore sequencing
    Andrew C. Read, Matthew Moscou, Aleksey V. Zimin, Geo M. Pertea, Rachel Sarah Meyer, Michael D. Purugganan, Jan E. Leach, Lindsay R. Triplett, Steven L. Salzberg, Adam Joseph Bogdanove · 2020 · PLoS Genetics
  43. Genomic insights into the recent chromosome reduction of autopolyploid sugarcane Saccharum spontaneum
    Qing Zhang, Yi-Ying Qi, Haoran Pan, Hai-Bao Tang, G. Wang, Xiu-Ting Hua, Yong-Jun Wang, Lian-Yu Lin, Zhen Li, Yi-Ho Li et al. · 2022 · Nature Genetics
  44. Barley Genetics Newsletter
    T. Tsuchiya · 2009 · Hereditas
  45. Mapping and Initial Analysis of Human Subtelomeric Sequence Assemblies
    Harold C. Riethman, Anthony E. Ambrosini, Carlos A. Castañeda, Jeffrey M. Finklestein, Xue-Lan Hu, Uma S. Mudunuri, Sheila Paul, Jun Wei · 2004 · Genome Research
  46. A Complete Sequence and Transcriptomic Analyses of Date Palm (Phoenix dactylifera L.) Mitochondrial Genome
    Yongjun Fang, Hao Wu, Tongwu Zhang, Meng Yang, Yuxin Yin, Linlin Pan, Xiaoguang Yu, Xiaowei Zhang, Songnian Hu, Ibrahim S. Al‐Mssallem et al. · 2012 · PLoS ONE
  47. Mitochondrial genome sequencing helps show the evolutionary mechanism of mitochondrial genome formation in Brassica
    Shengxin Chang, Tiantian Yang, Tongqing Du, Yongjuan Huang, Jianmei Chen, Jiyong Yan, Jianbo He, Rongzhan Guan · 2011 · BMC Genomics
  48. Complete Chloroplast Genome Sequences and Comparative Analysis of Chenopodium quinoa and C. album
    Su‐Young Hong, Kyeong‐Sik Cheon, Ki‐Oug Yoo, Hyun Oh Lee, Kwang‐Soo Cho, Jong-Taek Suh, Su‐Jeong Kim, Jeong-Hwan Nam, Hwang-Bae Sohn, Yul-Ho Kim · 2017 · Frontiers in Plant Science
  49. Genome sequence of the small brown planthopper, Laodelphax striatellus
    Junjie Zhu, Feng Jiang, Xianhui Wang, Pengcheng Yang, Yan‐Yuan Bao, Wan Zhao, Wei Wang, Hong Lu, Qianshuo Wang, Na Cui et al. · 2017 · GigaScience
  50. Chromosome-level genome assembly of Ophiorrhiza pumila reveals the evolution of camptothecin biosynthesis
    Amit Rai, Hideki Hirakawa, Ryo Nakabayashi, Shinji Kikuchi, Koki Hayashi, Megha Rai, Hiroshi Tsugawa, Taiki Nakaya, Tetsuya Mori, Hideki Nagasaki et al. · 2021 · Nature Communications
  51. The genomic sequence and analysis of the swine major histocompatibility complex
    C. Renard, Elizabeth A. Hart, Harminder Sehra, Helen L. Beasley, Penny C. Coggill, Kevin Howe, Jennifer Harrow, James G. R. Gilbert, Sarah K. Sims, Jane Rogers et al. · 2006 · Genomics
  52. Altered splicing of ATP6AP2 causes X-linked parkinsonism with spasticity (XPDS)
    Korvatska, Olena, Strand, Nicholas S., Berndt, Jason D., Strovas, Tim, Chen, Dong-Hui, Leverenz, James B., Kiianitsa, Konstantin, Mata, Ignacio F., Karakoc, Emre, Greenup, J. Lynne et al. · 2013 · Human Molecular Genetics
  53. Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome
    Kristen A. Panfilio, Iris M. Vargas Jentzsch, Joshua B. Benoit, Deniz F. Erezyilmaz, Yuichiro Suzuki, Stefano Colella, Hugh M. Robertson, Monica F. Poelchau, Robert Michael Waterhouse, Panagiotis Ioannidis et al. · 2019 · Genome biology
  54. European maize genomes highlight intraspecies variation in repeat and gene content
    Georg Haberer, Nadia M. Kamal, Eva Bauer, Heidrun Gundlach, Iris Fischer, Michael A. Seidel, M. Spannagl, Caroline Marcon, Alevtina S. Ruban, Claude Urbany et al. · 2020 · Nature Genetics
  55. On the abundance, amino acid composition, and evolutionary dynamics of low-complexity regions in proteins
    Mark A. DePristo, Martine M. Zilversmit, Daniel L. Hartl · 2006 · Gene
  56. Complete Chloroplast Genome of the Multifunctional Crop Globe Artichoke and Comparison with Other Asteraceae
    Pasquale Luca Curci, Domenico De Paola, Donatella Danzi, GIOVANNI GIUSEPPE VENDRAMIN, Gabriella Sonnante · 2015 · PLoS ONE
  57. Multilocus Variable-Number Tandem-Repeat Analysis for Investigation of Clostridium difficile Transmission in Hospitals
    Jane W. Marsh, Mary M. O’Leary, Kathleen A. Shutt, A. William Pasculle, Stuart Johnson, Dale N. Gerding, Carlene A. Muto, Lee H. Harrison · 2006 · Journal of Clinical Microbiology
  58. Characterization and Analysis of the Mitochondrial Genome of Common Bean (Phaseolus vulgaris) by Comparative Genomic Approaches
    Changwei Bi, Na Lü, Yiqing Xu, Chunpeng He, Zuhong Lu · 2020 · International Journal of Molecular Sciences
  59. A microsatellite marker based linkage map of tobacco
    GN Bindler, Rutger van der Hoeven, Irfan Gunduz, Jörg Plieske, Martin W. Ganal, Luca Rossi, Ferruccio Gadani, Paolo Donini · 2006 · Theoretical and Applied Genetics
  60. Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    David S. Johnson, Wei Li, D. Benjamin Gordon, A. Bhattacharjee, Bo Curry, Jayati Ghosh, Leonardo Brizuela, Jason S. Carroll, Myles Brown, Paul Flicek et al. · 2008 · Genome Research
  61. Recent advances in the detection of repeat expansions with short-read next-generation sequencing
    Bahlo, Melanie, Bennett, Mark F, Degorski, Peter, Tankard, Rick M, Delatycki, Martin B, Lockhart, Paul J · 2018 · F1000Research
  62. Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution
    Andrew D. W. Geering, Florian Maumus, Dario Copetti, Nathalie Choisne, Derrick J. Zwickl, Matthias Zytnicki, Alistair R. McTaggart, Simone Scalabrin, Silvia Vezzulli, Rod A. Wing et al. · 2014 · Nature Communications
  63. Hidden genomic features of an invasive malaria vector, Anopheles stephensi, revealed by a chromosome-level genome assembly
    Mahul Chakraborty, Arunachalam Ramaiah, Adriana Adolfi, Paige V. Halas, Bhagyashree Kaduskar, Luna Thanh Ngo, Suvratha Jayaprasad, Kiran Paul, Saurabh Whadgar, Subhashini Srinivasan et al. · 2021 · BMC Biology
  64. Evidence for a susceptibility locus for panic disorder near the catechol-O-methyltransferase gene on chromosome 22
    Steven P. Hamilton, Susan L. Slager, Gary A. Heiman, Zemin Deng, Fatemeh G. Haghighi, Donald F. Klein, Susan E. Hodge, Myrna M. Weissman, Abby J. Fyer, James A. Knowles · 2002 · Biological Psychiatry
  65. A Unique Recent Origin of the Allotetraploid Species Arabidopsis suecica: Evidence from Nuclear DNA Markers
    Mattias Jakobsson, Jenny Hagenblad, Simon Tavaré, Torbjörn Säll, Christer Halldén, Christina Lind‐Halldén, Magnus Nordborg · 2006 · Molecular Biology and Evolution
  66. Genetic blueprint of the zoonotic pathogen Toxocara canis
    Xing‐Quan Zhu, Pasi K. Korhonen, Huimin Cai, Neil David Young, Peter Lindberg Nejsum, Georg von Samson‐Himmelstjerna, Peter R. Boag, Patrick B. O. Tan, Qiye Li, Jiumeng Min et al. · 2015 · Nature Communications
  67. A Tale of Genome Compartmentalization: The Evolution of Virulence Clusters in Smut Fungi
    Julien Yann Dutheil, Gertrud Mannhaupt, Gabriel Schweizer, Christian M. K. Sieber, Martin Münsterkötter, Ulrich Güldener, Jan Schirawski, Regine Kahmann · 2016 · Genome Biology and Evolution
  68. Identification of Variable-Number Tandem-Repeat Loci in Leptospira interrogans Sensu Stricto
    Zainab Majed, E Bellenger, Danielle Postic, Christine Pourcel, Guy Baranton, Mathieu Picardeau · 2005 · Journal of Clinical Microbiology
  69. Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi
    Xiaofang Jiang, Ashley Peery, Andrew Brantley Hall, Atashi Sharma, Xiao Guang Chen, Robert Michael Waterhouse, Aleksey S. Komissarov, Michelle M. Riehle, Yogesh Shreepad Shouche, Maria V. Sharakhova et al. · 2014 · Genome biology
  70. Long distance dispersal and vertical gene flow in the Caribbean brooding coral Porites astreoides
    X. Serrano, I. Baums, T. Smith, Ross J. Jones, T. Shearer, A. Baker · 2016 · Scientific Reports
  71. A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa
    Brigitte T. Hofmeister, Johanna Denkena, Maria Colomé‐Tatché, Yadollah Shahryary, Rashmi R. Hazarika, Jane Grimwood, Sujan Mamidi, Jerry W. Jenkins, Paul Grabowski, Avinash Sreedasyam et al. · 2020 · Genome biology
  72. Tandem repeats in plant mitochondrial genomes: application to the analysis of population differentiation in the conifer Norway spruce
    Christoph Sperisen, Urs Büchler, Félix Gugerli, Gábor Mátyás, Thomas Geburek, GIOVANNI GIUSEPPE VENDRAMIN · 2001 · Molecular Ecology
  73. GT Repeats Are Associated with Recombination on Human Chromosome 22
    Jacek Majewski, Jürg Ott · 2000 · Genome Research
  74. Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates
    Louie N. van de Lagemaat, Liane Gagnier, Patrik Medstrand, Dixie L. Mager · 2005 · Genome Research
  75. Extreme haplotype variation in the desiccation-tolerant clubmoss Selaginella lepidophylla
    Robert VanBuren, Ching Man Wai, Shujun Ou, Jeremy Pardo, Doug Bryant, Ning Jiang, Todd C. Mockler, Patrick P. Edger, Todd P. Michael · 2017 · Nature Communications
  76. Improved assembly and variant detection of a haploid human genome using single‐molecule, high‐fidelity long reads
    Mitchell Robert Vollger, Glennis A. Logsdon, Peter A. Audano, Arvis Sulovari, David Porubskỳ, Paul S. Peluso, Aaron M. Wenger, Gregory T. Concepcion, Zev N. Kronenberg, Katherine M. Munson et al. · 2019 · Annals of Human Genetics
  77. Genetic variation in the immunoglobulin heavy chain locus shapes the human antibody repertoire
    Oscar L. Rodriguez, Yana Safonova, Catherine A. Silver, Kaitlyn M. Shields, William S. Gibson, Justin T. Kos, David A. Tieri, Hanzhong Ke, Katherine Jackson, Scott Dexter Boyd et al. · 2023 · Nature Communications
  78. The landscape of somatic mutation in cerebral cortex of autistic and neurotypical individuals revealed by ultra-deep whole-genome sequencing
    Rachel E. Rodin, Yan-Mei Dou, Minseok Kwon, Maxwell A. Sherman, Alissa M. D'Gama, Ryan N. Doan, Lariza Rento, Kelly M. Girskis, Craig L. Bohrson, S. Kim et al. · 2021 · Nature Neuroscience
  79. Untitled work
    Piccinno · 2025 · 10.1038/s41591-025-03693-9
  80. Heterochromatin-Enriched Assemblies Reveal the Sequence and Organization of the Drosophila melanogaster Y Chromosome
    Ching-Ho Chang, Amanda M. Larracuente · 2018 · Genetics
  81. Einkorn genomics sheds light on history of the oldest domesticated wheat
    Hanin Ibrahim Ahmed, Matthias Heuberger, Adam William Schoen, Dal‐Hoe Koo, Jesús Quiroz-Chávez, Laxman Adhikari, John W. Raupp, Stéphane Cauet, Nathalie Rodde, Charlotte Cravero et al. · 2023 · Nature
  82. Transposon-free regions in mammalian genomes
    Cas Simons, Michael Pheasant, Igor V. Makunin, John S. Mattick · 2005 · Genome Research
  83. Single haplotype analysis demonstrates rapid evolution of the killer immunoglobulin-like receptor ( KIR ) loci in primates
    Jennifer G. Sambrook, Arman A. Bashirova, Sophie Palmer, Sarah K. Sims, John Trowsdale, Laurent Abi‐Rached, Peter Parham, Mary N Carrington, Stephan Beck · 2005 · Genome Research
  84. A genome-wide study of Hardy–Weinberg equilibrium with next generation sequence data
    Jan Graffelman, Deepti Jain, Bruce S Weir · 2017 · Human Genetics
  85. Return to the Sea, Get Huge, Beat Cancer: An Analysis of Cetacean Genomes Including an Assembly for the Humpback Whale (Megaptera novaeangliae)
    Marc Tollis, Jooke Robbins, Andrew E. Webb, Lukas F. K. Kuderna, Aleah F. Caulin, Jacinda D Garcia, Martine Bérubé, Nader Pourmand, Tomàs Marquès‐Bonet, Mary J. O’Connell et al. · 2019 · Molecular Biology and Evolution
  86. Microbial composition of Kombucha determined using amplicon sequencing and shotgun metagenomics
    Arıkan, Muzaffer, Mitchell, Alex L., Finn, Robert D., Gürel, Filiz · 2020 · Journal of Food Science
  87. Assembly of 43 human Y chromosomes reveals extensive complexity and variation
    Pille Hallast, Peter Ebert, Mark G. Loftus, Feyza Yilmaz, Peter A. Audano, Glennis A. Logsdon, Marc Jan Bonder, Weichen Zhou, Wolfram Höps, Kwondo Kim et al. · 2023 · Nature
  88. The complete sequence and comparative analysis of ape sex chromosomes
    Kateryna D. Makova, Brandon D. Pickett, Robert S. Harris, Gabrielle A. Hartley, Monika Čechová, Karol Pál, Sergey Nurk, DongAhn Yoo, Qiuhui Li, Prajna Hebbar et al. · 2024 · Nature
  89. Grapevine pangenome facilitates trait genetics and genomic breeding
    Zhongjie Liu, Nan Wang, Ying Su, Qiming Long, Yanling Peng, Lingfei Shangguan, Fan Zhang, Shuo Cao, Xu Wang, Mengqing Ge et al. · 2024 · Nature Genetics
  90. Genome and transcriptome sequencing of the halophilic fungus Wallemia ichthyophaga: haloadaptations present and absent
    Janja Zajc, Yongfeng Liu, Wenkui Dai, Zhenyu Yang, Jingzhi Hu, Cene Gostinčar, Nina Gunde‐Cimerman · 2013 · BMC Genomics
  91. Sequence-based marker development in wheat: Advances and applications to breeding
    Etienne Paux, Pierre Sourdille, Ian Mackay, C. Feuillet · 2011 · Biotechnology Advances
  92. Structural variation in 1,019 diverse humans based on long-read sequencing
    Siegfried Schloissnig, Samarendra Pani, Jana Ebler, Carsten Hain, Vasiliki Tsapalou, Arda Söylev, Patrick Hüther, Hufsah Ashraf, Timofey Prodanov, Mila Asparuhova et al. · 2025 · Nature
  93. Complete Genome Sequence of the Grouper Iridovirus and Comparison of Genomic Organization with Those of Other Iridoviruses
    Chih-Tung Tsai, Jing-Wen Ting, Ming-Hsien Wu, Ming‐Feng Wu, Ing-Cherng Guo, Chi‐Yao Chang · 2005 · Journal of Virology
  94. Chromosome Complement of the Fungal Plant Pathogen Fusarium graminearum Based on Genetic and Physical Mapping and Cytological Observations
    Liane Rosewich Gale, J D Bryant, Sarah E. Calvo, Henriette Giese, Talma Katan, Kerry L. O'Donnell, Haruhisa Suga, M Taga, Thomas Usgaard, Todd J. Ward et al. · 2005 · Genetics
  95. The Ensembl Analysis Pipeline
    Simon Potter, Laura Clarke, Val Curwen, Stephen Keenan, Emmanuel Mongin, Stephen M. J. Searle, Arne Stabenau, Roy D. Storey, Michele E. Clamp · 2004 · Genome Research
  96. Genome and transcriptome of the porcine whipworm Trichuris suis
    Aaron R. Jex, Peter Lindberg Nejsum, Erich M. Schwarz, Li Hua Hu, Neil David Young, Ross S. Hall, Pasi K. Korhonen, Sheng-Guang Liao, Stig Milan Thamsborg, Jinquan Xia et al. · 2014 · Nature Genetics
  97. Exploring Repetitive DNA Landscapes Using REPCLASS, a Tool That Automates the Classification of Transposable Elements in Eukaryotic Genomes
    Cédric Feschotte, Umeshkumar Keswani, Nirmal Ranganathan, Marcel L. Guibotsy Mboulas, David Levine · 2009 · Genome Biology and Evolution
  98. Genome-wide detection of cytosine methylations in plant from Nanopore data using deep learning
    Peng Ni, Neng Huang, Fan Nie, Jun Zhang, Zhi Zhang, Bo Ming Wu, Lu Bai, Wende Liu, Chuan‐Le Xiao, Feng Luo et al. · 2021 · Nature Communications
  99. A population of stem cells with strong regenerative potential discovered in deer antlers
    Tao Qin, Guokun Zhang, Yi Zheng, Shengyou Li, Yuan Yuan, Qingjie Li, Mingliang Hu, Huazhe Si, Guanning Wei, Xueli Gao et al. · 2023 · Science
  100. Recombination explains isochores in mammalian genomes
    Juan I. Montoya‐Burgos, Pierre Boursot, Nicolas Galtier · 2003 · Trends in Genetics