Tandem repeats finder: a program to analyze DNA sequences

Benson, G.·1999·Nucleic Acids Research
DOI 10.1093/nar/27.2.573

Cited by (1,019)

Items 401–500 of 1,019

  1. XSTREAM: A practical algorithm for identification and architecture modeling of tandem repeats in protein sequences
    Aaron M. Newman, James B. Cooper · 2007 · BMC Bioinformatics
  2. DeNovoGear: de novo indel and point mutation discovery and phasing
    Avinash Ramu, Michiel J. Noordam, Rachel S. Schwartz, Arthur Wüster, Matthew E. Hurles, Reed A. Cartwright, Donald F. Conrad · 2013 · Nature Methods
  3. Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios
    Søren Besenbacher, SiYang Maggie Liu, José M. G. Izarzugaza, Jakob Grove, Kirstine Belling, Jette Bork‐Jensen, Shujia Huang, Thomas D. Als, Shengting Li, Rachita Yadav et al. · 2015 · Nature Communications
  4. Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes
    Yan-Bo Sun, Zijun Xiong, Xueyan Xiang, Shiping Liu, Wei-Wei Zhou, Xiao-Long Tu, Zhong Li, Lu Wang, Dong-Dong Wu, Bao-Lin Zhang et al. · 2015 · Proceedings of the National Academy of Sciences
  5. Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum
    Martina Peter, Annegret Kohler, Robin A. Ohm, Alan Kuo, Jennifer Krützmann, Emmanuelle Morin, Matthias Arend, Kerrie Barry, Manfred Binder, Cindy Choi et al. · 2016 · Nature Communications
  6. The Pinus taeda genome is characterized by diverse and highly diverged repetitive sequences
    Allen Kovach, Jill Wegrzyn, Genı́s Parra, Carson Holt, George E. Bruening, Carol A. Loopstra, James Hartigan, Mark D. Yandell, Charles H. Langley, Ian F. Korf et al. · 2010 · BMC Genomics
  7. Systematic evaluation of factors influencing ChIP-seq fidelity
    Yiwen Chen, Nicolas N Negre, Qunhua Li, Joanna O Mieczkowska, Matthew G. Slattery, Tao Liu, Yong Zhang, Tae-Kyung Kim, Housheng Hansen He, Jennifer T. Zieba et al. · 2012 · Nature Methods
  8. The complete mitochondrial genomes of two ghost moths, Thitarodes renzhiensis and Thitarodes yunnanensis: the ancestral gene arrangement in Lepidoptera
    Yong-Qiang Cao, Chuan Ma, Ji-Yue Chen, Da‐Rong Yang · 2012 · BMC Genomics
  9. Unearthing Neanderthal population history using nuclear and mitochondrial DNA from cave sediments
    Benjamin Vernot, Elena Irene Zavala, Asier Gómez‐Olivencia, Zenobia L. Jacobs, Viviane Slon, Fabrizio Mafessoni, Frédéric Romagné, Alice Pearson, Martin Petr, Nohemi Sala et al. · 2021 · Science
  10. Genetic Analysis of Completely Sequenced Disease-Associated MHC Haplotypes Identifies Shuffling of Segments in Recent Human History
    James A. Traherne, Roger Horton, Anne N. Roberts, Marcos Mateo Miretti, Matthew E. Hurles, C. Andrew Stewart, Jennifer L. Ashurst, Alexey M. Atrazhev, Penny C. Coggill, Sophie Palmer et al. · 2006 · PLoS Genetics
  11. Forensic value of 14 novel STRs on the human Y chromosome
    Alan J. Redd, Al B. Agellon, Veronica F. Kearney, Veronica A Contreras, Tatiana M. Karafet, Hwayong Park, Peter de Knijff, John M. Butler, Michael F. Hammer · 2002 · Forensic Science International
  12. Transcriptome Analysis Reveals a Rich Gene Set Related to Innate Immunity in the Eastern Oyster (Crassostrea virginica)
    Lin-Lin Zhang, Li Li, Ya-Bing Zhu, Guo-Fan Zhang, X. Guo · 2013 · Marine Biotechnology
  13. The pomegranate (Punica granatum L.) genome and the genomics of punicalagin biosynthesis
    Gaihua Qin, Chunyan Xu, Ray Ming, Haibao Tang, Romain Guyot, Elena M. Kramer, Yudong Hu, Xingkai Yi, Yongjie Qi, Xiangyang Xu et al. · 2017 · The Plant Journal
  14. Comparison of the two up-to-date sequencing technologies for genome assembly: HiFi reads of Pacific Biosciences Sequel II system and ultralong reads of Oxford Nanopore
    Dandan Lang, Shilai Zhang, Pingping Ren, Fan Liang, Zongyi Sun, Guanliang Meng, Yuntao Tan, Jiang Hu, Qihua Lai, Qihua Lai et al. · 2020 · GigaScience
  15. Multiple-Locus Variable Number Tandem Repeat Analysis of Staphylococcus Aureus: Comparison with Pulsed-Field Gel Electrophoresis and spa-Typing
    Leo M. Schouls, Emile C. Spalburg, Martijn van Luit, Xander W. Huijsdens, Gerlinde N. Pluister, Marga G. van Santen-Verheuvel, Han G. J. van der Heide, Hajo Grundmann, Max E. O. C. Heck, Albert J. de Neeling · 2009 · PLoS ONE
  16. Whole genome sequencing of turbot (Scophthalmus maximus; Pleuronectiformes): a fish adapted to demersal life
    Antonio J. Figueras, Diego Robledo, André Corvelo, Miguel Hermida, Patricia Pereiro, Juan Andres Rubiolo, Jèssica Gómez‐Garrido, Laia Carreté, Xabier Bello, Marta Gut et al. · 2016 · DNA Research
  17. PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions
    Olson, Nathan D., Wagner, Justin, McDaniel, Jennifer, Stephens, Sarah H., Westreich, Samuel T., Prasanna, Anish G., Johanson, Elaine, Boja, Emily, Maier, Ezekiel J., Serang, Omar et al. · 2022 · Cell Genomics
  18. Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat
    Marie Lisandra Zepeda Mendoza, Zijun Xiong, Marina Escalera‐Zamudio, Anne Kathrine Wiborg Runge, Julien Thézé, Daniel G. Streicker, Hannah K. Frank, Elizabeth Loza Rubio, Shengmao Liu, Oliver A. Ryder et al. · 2018 · Nature Ecology & Evolution
  19. Close but Distinct Regions of Human Herpesvirus 8 Latency-Associated Nuclear Antigen 1 Are Responsible for Nuclear Targeting and Binding to Human Mitotic Chromosomes
    Tristan Piolot, Marc Tramier, Maïté Coppey‐Moisan, Jean‐Claude Nicolas, Vincent Maréchal · 2001 · Journal of Virology
  20. Expanding an expanded genome: long-read sequencing of Trypanosoma cruzi
    Luisa Berná, Matías Rodriguez, María Laura Chiribao, Adriana Parodi‐Talice, Sebastián Pita, Gastón Rijo, Fernando Álvarez-Valín, Carlos Robello · 2018 · Microbial Genomics
  21. Spectral Repeat Finder (SRF): identification of repetitive sequences using Fourier transformation
    Deepak Sharma, Biju Issac, Gajendra P. S. Raghava, Ramakrishna Ramaswamy · 2004 · Bioinformatics
  22. Genome Comparison of Barley and Maize Smut Fungi Reveals Targeted Loss of RNA Silencing Components and Species-Specific Presence of Transposable Elements
    John D. Laurie, Shawkat Ali, Rob M. Linning, Gertrud Mannhaupt, Philip Wong, Ulrich Güldener, Martin Münsterkötter, Richard A. Moore, Regine Kahmann, Guus Bakkeren et al. · 2012 · The Plant Cell
  23. Comparative “Omics” of the Fusarium fujikuroi Species Complex Highlights Differences in Genetic Potential and Metabolite Synthesis
    Eva‐Maria Niehaus, Martin Münsterkötter, Robert H. Proctor, Daren W. Brown, Amir Sharon, Yifat Idan, Liat Oren‐Young, Christian M. K. Sieber, Ondřej Novák, Aleš Pěnčík et al. · 2016 · Genome Biology and Evolution
  24. Increasing genomic information in bivalves through new EST collections in four species: Development of new genetic markers for environmental studies and genome evolution
    Arnaud Tanguy, Nicolas Bierne, Carlos Saavedra, Benjamı́n Piña, Evelyne Bachère B, Michael Kube, Éric Bazin, François Bonhomme, Pierre Boudry, Viviane Boulo et al. · 2007 · Gene
  25. CRISPRCasdb a successor of CRISPRdb containing CRISPR arrays and cas genes from complete genome sequences, and tools to download and query lists of repeats and spacers
    Christine Pourcel, Marie Touchon, Nicolas Villeriot, Jean‐Philippe Vernadet, David Couvin, Claire Toffano‐Nioche, Gilles Vergnaud · 2019 · Nucleic Acids Research
  26. Long-Read DNA Sequencing: Recent Advances and Remaining Challenges
    Warburton, Peter E., Sebra, Robert P. · 2023 · Annual Review of Genomics and Human Genetics
  27. Progranulin null mutations in both sporadic and familial frontotemporal dementia
    Isabelle Le Ber, Julie van der Zee, Didier Hannequin, Ilse Gijselinck, Dominique Campion, Michèle Puel, Annie Laquerrière, Tim De Pooter, Agnès Camuzat, Marleen Van den Broeck et al. · 2007 · Human Mutation
  28. Contrasting genetic structure in Plasmodium vivax populations from Asia and South America
    Mallika Imwong, Shalini Nair, Sasithon Pukrittayakamee, Daniel Sudimack, Jeff T. Williams, Mayfong Mayxay, Paul N. Newton, Jung Ryong Kim, Amitabha Nandy, Lyda Osório et al. · 2007 · International Journal for Parasitology
  29. Genomic-scale capture and sequencing of endogenous DNA from feces
    George H. Perry, John C. Marioni, Páll Melsted, Yoav Gilad · 2010 · Molecular Ecology
  30. Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome
    Eileen P. Hamilton, Aurélie Kapusta, Piroska E. Huvos, Shelby L. Bidwell, Nikhat Zafar, Haibao Tang, Michalis Hadjithomas, Vivek Krishnakumar, Jonathan H. Badger, Elisabet V. Caler et al. · 2016 · eLife
  31. Genome of Tripterygium wilfordii and identification of cytochrome P450 involved in triptolide biosynthesis
    Lichan Tu, Ping Su, Zhongren Zhang, Linhui Gao, Jiadian Wang, Tianyuan Hu, Jiawei Zhou, Yifeng Zhang, Yujun Zhao, Yuan Liu et al. · 2020 · Nature Communications
  32. High-resolution silkworm pan-genome provides genetic insights into artificial selection and ecological adaptation
    Xiaoling Tong, Minjin Han, Kunpeng Lu, Shuaishuai Tai, Shubo Liang, Yucheng Liu, Hai Hu, Jianghong Shen, Anxing Long, Chengyu Zhan et al. · 2022 · Nature Communications
  33. Population Structures and the Role of Genetic Exchange in the Zoonotic Pathogen Cryptosporidium parvum
    Marianne E. Mallon, Annette MacLeod, Jonathan M. Wastling, Huw Vaughan Smith, Bill Reilly, Andy Tait · 2003 · Journal of Molecular Evolution
  34. The genome of the heartwater agent Ehrlichia ruminantium contains multiple tandem repeats of actively variable copy number
    Nicola E. Collins, Junita Liebenberg, Etienne Pierre de Villiers, Kelly A. Brayton, Elmarié Louw, Alri Pretorius, Erika Faber, Henriëtte van Heerden, Antoinette I. Josemans, Mirinda Van Kleef et al. · 2005 · Proceedings of the National Academy of Sciences
  35. Distinctive Genome Reduction Rates Revealed by Genomic Analyses of TwoCoxiella-Like Endosymbionts in Ticks
    Yuval Gottlieb, Itai Lalzar, Lisa Klasson · 2015 · Genome Biology and Evolution
  36. Genomes of the Banyan Tree and Pollinator Wasp Provide Insights into Fig-Wasp Coevolution.
    Xing-Tan Zhang, Gang Wang, Shengcheng Zhang, Shuai Chen, Yi-Bin Wang, Ping Wen, Xiao-Kai Ma, Yan Shi, Rui Qi, Yang Yang et al. · 2020 · Cell
  37. Integrated genome sequence and linkage map of physic nut (Jatropha curcasL.), a biodiesel plant
    Pingzhi Wu, Changpin Zhou, Shifeng Cheng, Zhenying Wu, Wenjia Lu, Jinli Han, Yanbo Chen, Yan Chen, Peixiang Ni, Ying Wang et al. · 2015 · The Plant Journal
  38. SIFT Indel: Predictions for the Functional Effects of Amino Acid Insertions/Deletions in Proteins
    Jing Hu, Pauline C. Ng · 2013 · PLoS ONE
  39. Breakage-fusion-bridge Cycles and Large Insertions Contribute to the Rapid Evolution of Accessory Chromosomes in a Fungal Pathogen
    Daniel Croll, Marcello Zala, Bruce Alan McDonald · 2013 · PLoS Genetics
  40. Intronic ATTTC repeat expansions in STARD7 in familial adult myoclonic epilepsy linked to chromosome 2
    Mark A Corbett, Thessa Kroes, Liana Veneziano, Mark F. Bennett, Rahel T. Florian, Amy Schneider, Antonietta Coppola, Laura Licchetta, Silvana Franceschetti, Antonio Suppa et al. · 2019 · Nature Communications
  41. Platypus and echidna genomes reveal mammalian biology and evolution
    Yang Zhou, Linda Shearwin-Whyatt, Jing Li, Z. Song, T. Hayakawa, D. Stevens, Jane C. Fenelon, E. Peel, Yuanyuan Cheng, Filip Pajpach et al. · 2021 · Nature
  42. Candidate gene analysis suggests a role for fatty acid biosynthesis and regulation of the complement system in the etiology of age-related maculopathy
    Conley, Yvette P., Thalamuthu, Anbupalam, Jakobsdottir, Johanna, Weeks, Daniel E., Mah, Tammy, Ferrell, Robert E., Gorin, Michael B. · 2005 · Human Molecular Genetics
  43. Application of Multilocus Variable-Number Tandem-Repeat Analysis for Molecular Typing of the Agent of Leptospirosis
    Laurence Salaün, Fabrice Mérien, Гурьянова Светлана Владимировна, Guy Baranton, Mathieu Picardeau · 2006 · Journal of Clinical Microbiology
  44. Islands of retroelements are major components of Drosophila centromeres
    Ching-Ho Chang, A. Chavan, J. Palladino, Xiao-Lu Wei, Nuno M. C. Martins, B. Santinello, Chin-Chih Chen, Jelena Erceg, Brian J. Beliveau, Chao-Ting Wu et al. · 2019 · PLoS Biology
  45. Whole-genome resequencing of 445 Lactuca accessions reveals the domestication history of cultivated lettuce
    Tong Wei, R. van Treuren, Xinjiang Liu, Zhaowu Zhang, Jiongjiong Chen, Yang Liu, Shanshan Dong, Peinan Sun, Tianming Lan, Tianming Lan et al. · 2021 · Nature Genetics
  46. Multiple-Locus Variable-Number Tandem Repeat Analysis of Dutch Bordetella pertussis Strains Reveals Rapid Genetic Changes with Clonal Expansion during the Late 1990s
    Leo M. Schouls, Han G. J. van der Heide, Luc Vauterin, P. Vauterin, Frits R. Mooi · 2004 · Journal of Bacteriology
  47. Geographic differences in vertical connectivity in the Caribbean coral Montastraea cavernosa despite high levels of horizontal connectivity at shallow depths
    X. Serrano, I. Baums, K. O'Reilly, T. Smith, R. J. Jones, T. Shearer, F. Nunes, A. Baker · 2014 · Molecular Ecology
  48. A Wide Extent of Inter-Strain Diversity in Virulent and Vaccine Strains of Alphaherpesviruses
    MORIAH LOUISE SZPARA, Yolanda R. Tafuri, Lance R. Parsons, S. Rafi Shamim, Kevin J. Verstrepen, Matthieu Legendre, Lynn W. Enquist · 2011 · PLoS Pathogens
  49. The complete mitochondrial genomes of Schistosoma haematobium and Schistosoma spindale and the evolutionary history of mitochondrial genome changes among parasitic flatworms
    D. Timothy J. Littlewood, Anne E. Lockyer, Bonnie Lee Webster, David Annandale Johnston, Thanh Hoa Le · 2006 · Molecular Phylogenetics and Evolution
  50. PBHoney: identifying genomic variants via long-read discordance and interrupted mapping
    Adam C. English, William J. Salerno, Jeffrey G. Reid · 2014 · BMC Bioinformatics
  51. Gray platelet syndrome: natural history of a large patient cohort and locus assignment to chromosome 3p
    Meral Gunay‐Aygun, Yifat Zivony-Elboum, Fatma Gümrük, Dan Geiger, Mualla Çetin, Morad Khayat, Robert Kleta, Nehama Cohen Kfir, Yair Anikster, Judith Chezar et al. · 2010 · Blood
  52. Polymorphic tandem repeats within gene promoters act as modifiers of gene expression and DNA methylation in humans
    Javier Quilez, Audrey Guilmatre, Paras Garg, Gareth Highnam, Melissa Gymrek, Yaniv Erlich, Ricky S. Joshi, David Mittelman, Andrew J. Sharp · 2016 · Nucleic Acids Research
  53. An improved genome assembly uncovers prolific tandem repeats in Atlantic cod
    Ole K. Tørresen, Bastiaan Star, Sissel Jentoft, William B. Reinar, Harald Grove, Jason Rafe Miller, Brian P. Walenz, James Knight, Jenny M. Ekholm, Paul S. Peluso et al. · 2017 · BMC Genomics
  54. Antarctic blackfin icefish genome reveals adaptations to extreme environments
    Bo-Mi Kim, Angel Amores, Seunghyun Kang, Do‐Hwan Ahn, Jin‐Hyoung Kim, Il‐Chan Kim, Jun Hyuck Lee, Sung Gu Lee, Hyoungseok Lee, Jung‐Eun Lee et al. · 2019 · Nature Ecology & Evolution
  55. STRetch: detecting and discovering pathogenic short tandem repeat expansions
    Harriet Dashnow, Monkol Lek, Belinda Phipson, Andreas Halman, Simon Sadedin, Andrew Lonsdale, Mark R. Davis, Phillipa J. Lamont, Joshua S. Clayton, Nigel G. Laing et al. · 2018 · Genome biology
  56. DNA Fingerprinting ofSalmonella entericasubsp.entericaSerovar Typhimurium with Emphasis on Phage Type DT104 Based on Variable Number of Tandem Repeat Loci
    Bjørn-Arne Lindstedt, Even Heir, Elisabet Gjernes, Georg Kapperud · 2003 · Journal of Clinical Microbiology
  57. Identification and classification of bacterial Type III toxin–antitoxin systems encoded in chromosomal and plasmid genomes
    Tim R. Blower, Francesca L. Short, Feng Rao, Kenji Mizuguchi, Xue Yuan Pei, Peter C. Fineran, Ben F. Luisi, George P. C. Salmond · 2012 · Nucleic Acids Research
  58. Identification and Characterization of Variable-Number Tandem-Repeat Markers for Typing of Brucella spp
    Adrian M. Whatmore, Stephen J. Shankster, Lorraine L. Perrett, Terry J. Murphy, Simon D. Brew, Rachel E. Thirlwall, Sally Jane Cutler, Alastair P MacMillan · 2006 · Journal of Clinical Microbiology
  59. Non-B-Form DNA Is Enriched at Centromeres
    Sivakanthan Kasinathan, S. Henikoff · 2018 · Molecular biology and evolution
  60. Is mammalian chromosomal evolution driven by regions of genome fragility?
    Aurora Ruiz‐Herrera, José Castresana, Terence J. Robinson · 2006 · Genome biology
  61. Phylogenetic Analysis of Clinical Herpes Simplex Virus Type 1 Isolates Identified Three Genetic Groups and Recombinant Viruses
    Peter Norberg, Tomas B. Bergström, Elham Rekabdar, Magnus Lindh, Jan‐Åke Liljeqvist · 2004 · Journal of Virology
  62. The Emergence of Resistance to the Benzimidazole Anthlemintics in Parasitic Nematodes of Livestock Is Characterised by Multiple Independent Hard and Soft Selective Sweeps
    Redman, Elizabeth, Whitelaw, Fiona, Tait, Andrew, Burgess, Charlotte, Bartley, Yvonne, Skuce, Philip John, Jackson, Frank, Gilleard, John Stuart · 2015 · PLOS Neglected Tropical Diseases
  63. Molecular and Chromosomal Evidence for Allopolyploidy in Soybean
    Navdeep Gill, Seth D. Findley, Jason G. Walling, Christian S. Hans, Jianxin Ma, Jeff J. Doyle, Gary S. Stacey, Scott A. Jackson · 2009 · PLANT PHYSIOLOGY
  64. Navigating Microbiological Food Safety in the Era of Whole-Genome Sequencing
    Jennifer Ronholm, Neda Nasheri, Nicholas Petronella, Franco Pagotto · 2016 · Clinical Microbiology Reviews
  65. Firefly genomes illuminate parallel origins of bioluminescence in beetles
    Timothy R. Fallon, Sarah E. Lower, Ching-Ho Chang, Manabu Bessho‐Uehara, Gavin J. Martin, Adam J. Bewick, Megan G. Behringer, Humberto Debat, Isaac Wong, John C. Day et al. · 2018 · eLife
  66. Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads
    Satomi Mitsuhashi, Martin C. Frith, Takeshi Mizuguchi, Satoko Miyatake, Tomoko Toyota, Hiroaki Adachi, Yoko Oma, Yoshihiro Kino, Hiroaki Mitsuhashi, Naomichi Matsumoto · 2019 · Genome biology
  67. Complete Chloroplast Genome Sequences of Important Oilseed Crop Sesamum indicum L
    Dong‐Keun Yi, Ki Joong Kim · 2012 · PLoS ONE
  68. The chromosome-level wintersweet (Chimonanthus praecox) genome provides insights into floral scent biosynthesis and flowering in winter
    Junzhong Shang, Jing‐Pu Tian, Huihui Cheng, Qiaomu Yan, Lai Li, Abbas Jamal, Zhongping Xu, Lin Xiang, Christopher A. Saski, Shuangxia Jin et al. · 2020 · Genome biology
  69. A beginner’s guide to manual curation of transposable elements
    Clément Goubert, Rory J. Craig, Agustin F. Bilat, Valentina Peona, Aaron A. Vogan, Anna Victoria Protasio · 2022 · Mobile DNA
  70. Genetic basis of high aroma and stress tolerance in the oolong tea cultivar genome
    Peng-Jie Wang, Jia-Xin Yu, Shan-Shan Jin, Shuai Chen, Chuan Yue, Wenling Wang, Shui-Lian Gao, Hong-Li Cao, Yu-Cheng Zheng, Meng-Ya Gu et al. · 2021 · Horticulture Research
  71. Brassica carinata genome characterization clarifies U’s triangle model of evolution and polyploidy in Brassica
    Xiaoming Song, Yanping Wei, Dong Xiao, Ke Qin Gong, Pengchuan Sun, Yiming Ren, Jiaqing Yuan, Tong Wu, Qihang Yang, Xinyu Li et al. · 2021 · PLANT PHYSIOLOGY
  72. Incomplete lineage sorting and phenotypic evolution in marsupials
    Shaohong Feng, Ming Bai, Iker Rivas-González, Cai Li, Shiping Liu, Yijie Tong, Haidong Yang, Guangji Chen, Duo Xie, Karen E. Sears et al. · 2022 · Cell
  73. The critically endangered vaquita is not doomed to extinction by inbreeding depression
    Jacqueline A. Robinson, Christopher C. Kyriazis, Sergio F. Nigenda‐Morales, Annabel C. Beichman, Lorenzo Rojas‐Bracho, Kelly M. Robertson, Michaël C. Fontaine, Robert K. Wayne, Kirk E. Lohmueller, Barbara L. Taylor et al. · 2022 · Science
  74. A clustering method for repeat analysis in DNA sequences
    Natalia Volfovsky, Brian J. Haas, Steven L. Salzberg · 2001 · Genome biology
  75. Development of Variable-Number Tandem Repeat Typing ofMycobacterium bovis: Comparison of Results with Those Obtained by Using Existing Exact Tandem Repeats and Spoligotyping
    Solvig Roring, Alistair N. J. Scott, David Brittain, Ian Walker, R. Glyn Hewinson, Sydney D. Neill, Robin Alfred Skuce · 2002 · Journal of Clinical Microbiology
  76. A high density genetic map of tobacco (Nicotiana tabacum L.) obtained from large scale microsatellite marker development
    GN Bindler, Jörg Plieske, Nicolas Bakaher, Irfan Gunduz, Nikolai V. Ivanov, Rutger van der Hoeven, Martin W. Ganal, Paolo Donini · 2011 · Theoretical and Applied Genetics
  77. Molecular Genetic Markers: Discovery, Applications, Data Storage and Visualisation
    Chris Duran, Nikki Appleby, David Edwards, Jacqueline Batley · 2009 · Current Bioinformatics
  78. A Genomic Survey of Positive Selection in Burkholderia pseudomallei Provides Insights into the Evolution of Accidental Virulence
    Tannistha Nandi, Catherine Ong, Arvind Pratap Singh, Justin A. Boddey, Timothy P. Atkins, Mitali Sarkar‐Tyson, Angela E. Essex-Lopresti, Hui Hoon Chua, Talima Pearson, Jason F. Kreisberg et al. · 2010 · PLoS Pathogens
  79. CRISPR-dCas9 and sgRNA scaffolds enable dual-colour live imaging of satellite sequences and repeat-enriched individual loci
    Yi Fu, Pedro P. Rocha, Vincent Mingyi Luo, Ramya Raviram, Yan Deng, Esteban O. Mazzoni, Jane A. Skok · 2016 · Nature Communications
  80. Transposon-Mediated Horizontal Transfer of the Host-Specific Virulence Protein ToxA between Three Fungal Wheat Pathogens
    Megan C. McDonald, Adam P. Taranto, Erin Hill, Benjamin Schwessinger, Zhaohui Liu, S. Simpfendorfer, Andrew Milgate, Peter Scott Solomon · 2019 · mBio
  81. Genomic scan for single nucleotide polymorphisms reveals patterns of divergence and gene flow between ecologically divergent species
    Kai N. Stölting, Rick W. Nipper, Dorothea Lindtke, Céline Caseys, Stephan Waeber, Stefano Castiglione, Christian Lexer · 2012 · Molecular Ecology
  82. G-quadruplex structures trigger RNA phase separation
    Yueying Zhang, Minglei Yang, Susan Hanley Duncan, Xiaofei Yang, Mahmoud A. S. Abdelhamid, Lin Huang, Huakun Zhang, Philip N. Benfey, Zoë A. E. Waller, Yiliang Ding · 2019 · Nucleic Acids Research
  83. Pyropia yezoensis genome reveals diverse mechanisms of carbon acquisition in the intertidal environment
    Dongmei Wang, Xinzi Yu, Kuipeng Xu, Guiqi Bi, Min Cao, Ehud Zelzion, Chunxiang Fu, Peipei Sun, Yang Liu, Fanna Kong et al. · 2020 · Nature Communications
  84. Genome of the pitcher plant Cephalotus reveals genetic changes associated with carnivory
    Kenji Fukushima, Xiaodong Fang, David Alvarez‐Ponce, Huimin Cai, Lorenzo Carretero‐Paulet, Cui Chen, Tien-Hao Chang, Kimberly M. Farr, Tomomichi Fujita, Yuji Hiwatashi et al. · 2017 · Nature Ecology & Evolution
  85. Multiple sequence alignment for phylogenetic purposes
    David A. Morrison · 2006 · Australian Systematic Botany
  86. Conserved methylation imprints in the human and mouse GRB10 genes with divergent allelic expression suggests differential reading of the same mark
    Philippe Arnaúd · 2003 · Human Molecular Genetics
  87. The rubber tree genome shows expansion of gene family associated with rubber biosynthesis
    Nyok‐Sean Lau, Yuko Makita, Mika Kawashima, Todd D. Taylor, Shinji Kondo, Ahmad Sofiman Othman, Alexander Chong Shu‐Chien, Minami Matsui · 2016 · Scientific Reports
  88. Comparative Chloroplast Genomics of Dipsacales Species: Insights Into Sequence Variation, Adaptive Evolution, and Phylogenetic Relationships
    Weibing Fan, Ying Wu, Jiao Yang, Khurram Shahzad, Zhong‐Hu Li · 2018 · Frontiers in Plant Science
  89. On-line resources for bacterial micro-evolution studies using MLVA or CRISPR typing
    Ibtissem Grissa, Patrick Bouchon, Christine Pourcel, Gilles Vergnaud · 2007 · Biochimie
  90. Analysis of the giant genomes of F ritillaria ( L iliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size
    Laura J. Kelly, Simon Renny‐Byfield, Jaume Pellicer, Jir̆ı́ Macas, Petr Novák, Pavel Neumann, Martin A. Lysák, Peter D. Day, Madeleine Berger, Michael F. Fay et al. · 2015 · New Phytologist
  91. The complete mitochondrial genome of the fall webworm, Hyphantria cunea (Lepidoptera: Arctiidae)
    Fang Liao, Lin Wang, Song Wu, Yu-Ping Li, Lei Zhao, Huang Guo-ming, Chun-Jing Niu, Yan‐Qun Liu, Minggang Li · 2010 · International Journal of Biological Sciences
  92. High and Variable Rates of Repeat-Mediated Mitochondrial Genome Rearrangement in a Genus of Plants
    Logan W. Cole, Wenhu Guo, Jeffrey P. Mower, Jeffrey D. Palmer · 2018 · Molecular Biology and Evolution
  93. Mikania micrantha genome provides insights into the molecular mechanism of rapid growth
    Bo Liu, Jian Yan, Weihua Li, Lijuan Yin, Ping Li, Hanxia Yu, Longsheng Xing, Minling Cai, Hengchao Wang, Mengxin Zhao et al. · 2020 · Nature Communications
  94. Recompleting the Caenorhabditis elegans genome
    Jun Yoshimura, Kazuki Ichikawa, Massa J. Shoura, Karen L. Artiles, Idan Gabdank, Lamia Wahba, Cheryl L. Smith, Mark L. Edgley, Ann E. Rougvie, Andrew Z. Fire et al. · 2019 · Genome Research
  95. Characterization of Withania somnifera chloroplast genome and its comparison with other selected species of Solanaceae
    Furrukh Mehmood, Abdullah Abdullah, Iram Shahzadi, Ibrar Ahmed, Mohammad Tahir Waheed, Bushra Mirza · 2019 · Genomics
  96. Mitochondrial Complex III Deficiency Associated with a Homozygous Mutation in UQCRQ
    Ortal Barel, Zamir Shorer, Hagit Flusser, Rivka Ofir, Ginat Narkis, Gal Finer, Hanah Shalev, Aref El Nasasra, Ann Saada, Ohad S. Birk · 2008 · The American Journal of Human Genetics
  97. From Conservation Genetics to Conservation Genomics
    Craig Robert Primmer · 2009 · Annals of the New York Academy of Sciences
  98. Approaches to Fungal Genome Annotation
    Brian J. Haas, Qiandong Zeng, Matthew D. Pearson, Christina A. Cuomo, Jennifer Russo Wortman · 2011 · Mycology&#58 An International Journal on Fungal Biology
  99. An Overview of Duplicated Gene Detection Methods: Why the Duplication Mechanism Has to Be Accounted for in Their Choice
    Tanguy Lallemand, Martin Leduc, Claudine Landès, Carène Rizzon, Emmanuelle Lerat · 2020 · Genes
  100. Comparative Genomic Analysis of Hyperthermophilic Archaeal Fuselloviridae Viruses
    Blake Wiedenheft, Kenneth Mark Stedman, Francisco Figueroa Roberto, Deborah A. Willits, Anne-Kathrin Gleske, Luisa Zoeller, Jamie C. Snyder, Trevor Douglas, Mark Young · 2004 · Journal of Virology