Tandem repeats finder: a program to analyze DNA sequences
Benson, G.·1999·Nucleic Acids Research
Cited by (1,019)
Items 301–400 of 1,019
- TROLL—Tandem Repeat Occurrence LocatorAdalberto T. Castelo, Wellington S. Martins, Guang R. Gao · 2002 · Bioinformatics
- Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolutionJinfeng Chen, Quanfei Huang, Dongying Gao, Junyi Wang, Yongshan Lang, Bo Li, Bo Li, Zetao Bai, José Luis Goicoechea, Chengzhi Liang et al. · 2013 · Nature Communications
- A comprehensive draft genome sequence for lupin ( Lupinus angustifolius ), an emerging health food: insights into plant–microbe interactions and legume evolutionJames K. Hane, Yao Ming, Lars G. Kamphuis, Matthew N. Nelson, Gagan Garg, Craig Anthony Atkins, Philipp E. Bayer, Armando Bravo, Scott Bringans, Steven B. Cannon et al. · 2016 · Plant Biotechnology Journal
- Molecular typing methodologies for microbial source tracking and epidemiological investigations of Gram-negative bacterial foodborne pathogens☆Steven L. Foley, Aaron M. Lynne, Rajesh Nayak · 2009 · Infection Genetics and Evolution
- Satellite DNA evolution: old ideas, new approachesSarah E. Lower, Michael P. McGurk, Andrew G. Clark, Daniel A. Barbash · 2018 · Current Opinion in Genetics & Development
- The report of my death was an exaggeration: A review for researchers using microsatellites in the 21st centuryRichard G.J. Hodel, Claudia Segovia Salcedo, Jacob B. Landis, Andrew A. Crowl, Miao Sun, Xiaoxian Liu, Matthew A. Gitzendanner, Norman Alan Douglas, Charlotte C. Germain‐Aubrey, Shichao Chen et al. · 2016 · Applications in Plant Sciences
- Minisatellites: Mutability and Genome ArchitectureGilles Vergnaud, France Denœud · 2000 · Genome Research
- CEAS: cis-regulatory element annotation systemX. Ji, Wei Li, Jun S. Song, Liping Wei, X. S. Liu · 2006 · Nucleic Acids Research
- Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered ScaffoldingShubha Vij, Heiner Kuhl, Inna S. Kuznetsova, Aleksey S. Komissarov, Andrey A. Yurchenko, Peter Van Heusden, Siddharth Singh, Natascha May Thevasagayam, Sai Rama Sridatta Prakki, Kathiresan Purushothaman et al. · 2016 · PLoS Genetics
- Genome Annotation Assessment in Drosophila melanogasterMartin G. Reese, George Hartzell, Nomi L. Harris, Uwe Ohler, Josep F. Abril, Suzanna Lewis · 2000 · Genome Research
- Critical association of ncRNA with intronsDavid Rearick, Ashwin Prakash, A. John McSweeny, Samuel S. Shepard, Larisa V. Fedorova, Alexey N. Fedorov · 2010 · Nucleic Acids Research
- Genome Stability of Lyme Disease Spirochetes: Comparative Genomics of Borrelia burgdorferi PlasmidsSherwood Casjens, Emmanuel F. Mongodin, W.-G. Qiu, Benjamin J. Luft, Steven E. Schutzer, Eddie Bryan Gilcrease, Wai Mun Huang, Marija Vujadinovic, John K. Aron, Levy C Vargas et al. · 2012 · PLoS ONE
- Unique Features of the Loblolly Pine (Pinus taeda L.) Megagenome Revealed Through Sequence AnnotationJill Wegrzyn, John D Liechty, Kristian Stevens, Le‐Shin Wu, Carol A. Loopstra, Hans A. Vasquez-Gross, William M Dougherty, Brian Y Lin, Jacob J Zieve, Pedro J. Martínez‐García et al. · 2014 · Genetics
- Genomic legacy of the African cheetah, Acinonyx jubatusDobrynin, Pavel, Liu, Shiping, Tamazian, Gaik, Xiong, Zijun, Yurchenko, Andrey A., Krasheninnikova, Ksenia, Kliver, Sergey, Schmidt-Küntzel, Anne, Koepfli, Klaus-Peter, Johnson, Warren et al. · 2015 · Genome Biology
- Complex modular architecture around a simple toolkit of wing pattern genesSteven M. Van Belleghem, Pasi M. A. Rastas, Alexie Papanicolaou, Simon H. Martin, Carlos F. Arias, Megan A. Supple, Joseph J. Hanly, James Mallet, James J. Lewis, Heather M. Hines et al. · 2017 · Nature Ecology & Evolution
- Repeat expansions confer WRN dependence in microsatellite-unstable cancersNiek van Wietmarschen, Sriram Sridharan, W. Nathan, Anthony T. Tubbs, Edmond M. Chan, E. Callen, Wei Wu, F. Belinky, Veenu Tripathi, N. Wong et al. · 2020 · Nature
- Sequence-based estimation of minisatellite and microsatellite repeat variabilityMatthieu Legendre, Nathalie L.M.M. Pochet, Theodore R. Pak, Kevin J. Verstrepen · 2007 · Genome Research
- Fully phased human genome assembly without parental data using single-cell strand sequencing and long readsHuman Genome Structural Variation Consortium, Porubsky, David, Ebert, Peter, Audano, Peter A., Vollger, Mitchell R., Harvey, William T., Marijon, Pierre, Ebler, Jana, Munson, Katherine M., Sorensen, Melanie et al. · 2021 · Nature Biotechnology
- The first draft of the pigeonpea genome sequenceNagendra Kumar Singh, Deepak Kumar Gupta, Pawan Kumar Jayaswal, Ajay Kumar Mahato, Sutapa Dutta, Sangeeta Singh, Shefali Bhutani, Vivek Dogra, Bikram Pratap Singh, Giriraj Kumawat et al. · 2011 · Journal of Plant Biochemistry and Biotechnology
- Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response GenesLeah K. McHale, William J. Haun, Wayne Wenzhong Xu, Pudota B. Bhaskar, Justin Anderson, David L. Hyten, Daniel J. Gerhardt, Jeffrey A. Jeddeloh, Robert M. Stupar · 2012 · PLANT PHYSIOLOGY
- New observations on maternal age effect on germline de novo mutationsWendy S.W. Wong, Benjamin D. Solomon, Dale L. Bodian, Prachi Kothiyal, Greg D. Eley, Kathi Huddleston, Robin Baker, Dzung Thach, Ramaswamy K. Iyer, Joseph G. Vockley et al. · 2016 · Nature Communications
- Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody BamboosZhenhua Guo, Pengfei Ma, Guoqian Yang, Jin‐Yong Hu, Yun-Long Liu, Enhua Xia, Micai Zhong, Lei Zhao, Guiling Sun, Yuxing Xu et al. · 2019 · Molecular Plant
- Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-longJinyang Zhang, Lingling Hou, Zhenqiang Zuo, Peifeng Ji, Xiaorong Zhang, Yuanchao Xue, Fangqing Zhao · 2021 · Nature Biotechnology
- Characterization of the Genomic Xist Locus in Rodents Reveals Conservation of Overall Gene Structure and Tandem Repeats but Rapid Evolution of Unique SequenceTatyana B. Nesterova, S. Ya. Slobodyanyuk, Eugeny A. Elisaphenko, Alexander I. Shevchenko, Colette M. Johnston, Marina E. Pavlova, Igor B. Rogozin, Nikolay N. Kolesnikov, Neil Brockdorff, Suren M. Zakian · 2001 · Genome Research
- “A draft Musa balbisiana genome sequence for molecular genetics in polyploid, inter- and intra-specific Musa hybrids”Mark W. Davey, Ranganath Gudimella, Jennifer Ann Harikrishna, Wan Sin Lee, Norzulaani Khalid, J. Keulemans · 2013 · BMC Genomics
- Mutations in a new gene encoding a thiamine transporter cause thiamine-responsive megaloblastic anaemia syndromeGeorge A. Diaz, Maryam Banikazemi, Kimihiko Oishi, Robert J. Desnick, Bruce D. Gelb · 1999 · Nature Genetics
- The Gene Mutated in Variant Late-Infantile Neuronal Ceroid Lipofuscinosis (CLN6) and in nclf Mutant Mice Encodes a Novel Predicted Transmembrane ProteinRuth B. Wheeler, Julie D. Sharp, Roger Alan Schultz, John M. Joslin, Ruth Elizabeth Williams, Sara Mole · 2002 · The American Journal of Human Genetics
- ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing dataEgor Dolzhenko, Mark F. Bennett, Phillip A. Richmond, Brett Trost, Sai Chen, Joke J.F.A. van Vugt, Charlotte M. Nguyen, Giuseppe Narzisi, Vladimir G. Gainullin, Andrew M. Gross et al. · 2020 · Genome biology
- The Complete Genome Sequence of the Plant Growth-Promoting Bacterium Pseudomonas sp. UW4Jin Duan, Wei Jiang, Zhenyu Cheng, John J. Heikkila, Bernard R. Glick · 2013 · PLoS ONE
- A new repeat-masking method enables specific detection of homologous sequencesMartin C. Frith · 2010 · Nucleic Acids Research
- Genome sequence of the stramenopile Blastocystis, a human anaerobic parasiteFrance Denœud, Michaël Roussel, Benjamin Noël, Ivan Wawrzyniak, Corinne Da Silva, Marie Diogon, Éric Viscogliosi, Céline Brochier‐Armanet, Arnaud Couloux, Julie Poulain et al. · 2011 · Genome biology
- Large-scale gene losses underlie the genome evolution of parasitic plant Cuscuta australisGuiling Sun, Yuxing Xu, Hui Liu, Ting Sun, Jingxiong Zhang, Christian Hettenhausen, Guojing Shen, Jinfeng Qi, Yan Qin, Jìng Li et al. · 2018 · Nature Communications
- Assembly and comparative analysis of the complete mitochondrial genome of Suaeda glaucaYan Cheng, Xiaoxue He, S. V. G. N. Priyadarshani, Yu Wang, Ye Li, Chao Shi, Kangzhuo Ye, Qiao Zhou, Ziqiang Luo, Fang Deng et al. · 2021 · BMC Genomics
- The evolutionary history of Neanderthal and Denisovan Y chromosomesMartin Petr, Mateja Hajdinjak, Qiaomei Fu, Elena Essel, Hélène Rougier, Isabelle Crèvecoeur, Patrick Semal, Liubov Vitalievna Golovanova, Vladimir Borisovich Doronichev, Carles Lalueza‐Fox et al. · 2020 · Science
- The Mitochondrial Genome of the Gymnosperm Cycas taitungensis Contains a Novel Family of Short Interspersed Elements, Bpu Sequences, and Abundant RNA Editing SitesShu‐Miaw Chaw, Arthur Chun-Chieh Shih, D. Wang, Yu‐Wei Wu, S.-M. Liu, T.-Y. Chou · 2008 · Molecular Biology and Evolution
- Genomic signatures of mitonuclear coevolution across populations of Tigriopus californicusFelipe S. Barreto, Eric T. Watson, Thiago G. Lima, Christopher S. Willett, Suzanne Edmands, Weizhong Li, Ronald S. Burton · 2018 · Nature Ecology & Evolution
- Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teffRobert VanBuren, Ching Man Wai, Xuewen Wang, Jeremy Pardo, Alan E. Yocca, Hao Wang, Srinivasa Rao Chaluvadi, Guomin Han, Douglas W. Bryant, Patrick P. Edger et al. · 2020 · Nature Communications
- Regulation of human MAPT gene expressionMarie‐Laure Caillet‐Boudin, Luc Buée, Nicolas Sergeant, Bruno Lefebvre · 2015 · Molecular Neurodegeneration
- The Complete Chloroplast Genome Sequence of Cephalotaxus oliveri (Cephalotaxaceae): Evolutionary Comparison of Cephalotaxus Chloroplast DNAs and Insights into the Loss of Inverted Repeat Copies in GymnospermsXuan Yi, Lei Gao, Bo Wang, Yingjuan Su, Ting Wang · 2013 · Genome Biology and Evolution
- Accelerated Evolution of the ASPM Gene Controlling Brain Size Begins Prior to Human Brain ExpansionNatalay Kouprina, Adam Pavlı́ček, Ganeshwaran H. Mochida, Gregory G. Solomon, William Gersch, Young-Ho Yoon, Randall V. Collura, Maryellen Ruvolo, J. Carl Barrett, Christopher Geoffrey Woods et al. · 2004 · PLoS Biology
- Short tandem repeats bind transcription factors to tune eukaryotic gene expressionConnor A. Horton, Amr M. Alexandari, Michael G.B. Hayes, Emil Marklund, Julia M. Schaepe, Arjun K. Aditham, Nilay Shah, Peter Suzuki, Avanti Shrikumar, Ariel Afek et al. · 2023 · Science
- In the name of the father: surnames and geneticsMark A. Jobling · 2001 · Trends in Genetics
- Characterization and expression profiles of miRNAs in rice seedsLiang‐Jiao Xue, Jingjing Zhang, Hong‐Wei Xue · 2008 · Nucleic Acids Research
- Single-Molecule Real-Time Sequencing Combined with Optical Mapping Yields Completely Finished Fungal GenomeLuigi Faino, Michael F. Seidl, Erwin Datema, Grardy C. M. van den Berg, Antoine Janssen, Alexander H. J. Wittenberg, Bart P. H. J. Thomma · 2015 · mBio
- Highly contiguous assemblies of 101 drosophilid genomesBernard Y. Kim, Jeremy Wang, Danny E. Miller, Olga Y. Barmina, Emily Delaney, Ammon Thompson, Aaron A. Comeault, David Peede, Emmanuel R. R. D’Agostino, Julianne Naomi Pelaez et al. · 2021 · eLife
- Telomere-to-telomere gapless chromosomes of banana using nanopore sequencingCaroline Belser, Franc‐Christophe Baurens, Benjamin Noël, Guillaume Martin, Corinne Cruaud, Benjamin Istace, Nabila Yahiaoui, Karine Labadie, Eva Hřibová, Jaroslav Doležel et al. · 2021 · Communications Biology
- TRDB--The Tandem Repeats DatabaseYevgeniy Gelfand, A. Rodriguez, Gary Benson · 2006 · Nucleic Acids Research
- Comparative Analysis of the Genomes of Two Field Isolates of the Rice Blast Fungus Magnaporthe oryzaeMinfeng Xue, Jun Yang, Zhigang Li, Songnian Hu, Nan Yao, Ralph A. Dean, Wensheng Zhao, Mi Shen, Haiwang Zhang, Chao Li et al. · 2012 · PLoS Genetics
- Maternally Inherited Birk Barel Mental Retardation Dysmorphism Syndrome Caused by a Mutation in the Genomically Imprinted Potassium Channel KCNK9Ortal Barel, Stavit A. Shalev, Rivka Ofir, Asi Cohen, Joël Zlotogora, Zamir Shorer, Galia Mazor, Gal Finer, Shareef Khateeb, Noam Zilberberg et al. · 2008 · The American Journal of Human Genetics
- The First Symbiont-Free Genome Sequence of Marine Red Alga, Susabi-nori (Pyropia yezoensis)Yoji Nakamura, Naobumi V. Sasaki, Masahiro Kobayashi, Nobuhiko Ojima, Motoshige Yasuike, Yuya Shigenobu, Masataka Satomi, Yoshiya Fukuma, Koji Shiwaku, Atsumi Tsujimoto et al. · 2013 · PLoS ONE
- A Dual Origin of the Xist Gene from a Protein-Coding Gene and a Set of Transposable ElementsEugeny A. Elisaphenko, Nikolay N. Kolesnikov, Alexander I. Shevchenko, Igor B. Rogozin, Tatyana B. Nesterova, Neil Brockdorff, Suren M. Zakian · 2008 · PLoS ONE
- The Genome of Canarypox VirusE. R. Tulman, Claudio L. Afonso, Zhiqiang Lu, Laszlo Zsak, G. F. Kutish, Daniel L. Rock · 2003 · Journal of Virology
- ADAPTIVE POPULATION DIFFERENTIATION IN PHENOLOGY ACROSS A LATITUDINAL GRADIENT IN EUROPEAN ASPEN (POPULUS TREMULA, L.): A COMPARISON OF NEUTRAL MARKERS, CANDIDATE GENES AND PHENOTYPIC TRAITSDavid Hall, Virginia Luquez, Victoria M. Garcia, Kate R. St Onge, Stefan Jansson, Pär K. Ingvarsson · 2007 · Evolution
- Multilocus Variable-Number Tandem Repeat AnalysisDistinguishes Outbreak and Sporadic Escherichia coli O157:H7IsolatesAnna C. Noller, Mary Catherine McEllistrem, Antônio Guilherme Pacheco, David J. Boxrud, Lee H. Harrison · 2003 · Journal of Clinical Microbiology
- Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable targeted nanopore sequencingIgor Stevanovski, Sanjog R. Chintalaphani, Hasindu Gamaarachchi, James M. Ferguson, Sandy S. Pineda, Carolin K. Scriba, Michel C. Tchan, Victor S.C. Fung, Karl Ng, Andrea Cortese et al. · 2022 · Science Advances
- African lungfish genome sheds light on the vertebrate water-to-land transitionWang, Kun, Wang, Jun, Zhu, Chenglong, Yang, Liandong, Ren, Yandong, Ruan, Jue, Fan, Guangyi, Hu, Jiang, Xu, Wenjie, Bi, Xupeng et al. · 2021 · Cell
- High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typingPhilippe Le Flèche, M. Fabre, France Denœud, Jean‐Louis Koeck, Gilles Vergnaud · 2002 · BMC Microbiology
- Expanding the CRISPR imaging toolset withStaphylococcus aureusCas9 for simultaneous imaging of multiple genomic lociBaohui Chen, Jeffrey Hu, Ricardo Almeida, Harrison Liu, Sanjeev Balakrishnan, Christian Covill‐Cooke, Wendell A. Lim, Bo Huang · 2016 · Nucleic Acids Research
- The draft genome of Tibetan hulless barley reveals adaptive patterns to the high stressful Tibetan PlateauXingquan Zeng, Hai Long, Zhuo Wang, Shancen Zhao, Yawei Tang, Zhiyong Huang, Yulin Wang, Qijun Xu, Likai Mao, Guangbing Deng et al. · 2015 · Proceedings of the National Academy of Sciences
- Complete Chloroplast Genome of Nicotiana otophora and its Comparison with Related SpeciesSajjad Asaf, Abdul Latif Khan, Abdur Rahim Khan, Muhammad Waqas, ⋅Sang-Mo Kang, Muhammad Aaqil Khan, Seok-Min Lee, In‐Jung Lee · 2016 · Frontiers in Plant Science
- Morphology and genome of a snailfish from the Mariana Trench provide insights into deep-sea adaptationKun Wang, Yanjun Shen, Yongzhi Peter Yang, Xiaoni Gan, Guichun Liu, Kuang Hu, Yongxin Li, Zhaoming Gao, Li Zhu, Guoyong Yan et al. · 2019 · Nature Ecology & Evolution
- T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithmJulien Jorda, Andrey V. Kajava · 2009 · Bioinformatics
- Genetic basis of ruminant headgear and rapid antler regenerationYu Wang, Chenzhou Zhang, Nini Wang, Zhipeng Li, Rasmus Heller, Rong Liu, Yue Zhao, Jiangang Han, Xiangyu Pan, Zhuqing Zheng et al. · 2019 · Science
- Pan-genome bridges wheat structural variations with habitat and breedingChengzhi Jiao, Xiaoming Xie, Chenyang Hao, Liyang Chen, Yuxin Xie, Vanika Garg, Li Juan Zhao, Zihao Wang, Yuqi Zhang, Tian Li et al. · 2024 · Nature
- Identification and characterisation of novel human Y-chromosomal microsatellites from sequence database informationQasim Ayub · 2000 · Nucleic Acids Research
- The Release 5.1 Annotation of Drosophila melanogaster HeterochromatinChristopher D. Smith, Shengqiang Shu, Chris Mungall, Gary H. Karpen · 2007 · Science
- PLA2G6 Mutation Underlies Infantile Neuroaxonal DystrophyShareef Khateeb, Hagit Flusser, Rivka Ofir, Ilan Shelef, Ginat Narkis, Gideon Vardi, Zamir Shorer, Rachel Lévy, Aharon Galil, Khalil Elbedour et al. · 2006 · The American Journal of Human Genetics
- Contribution to Alzheimer's disease risk of rare variants in TREM2, SORL1, and ABCA7 in 1779 cases and 1273 controlsBellenguez, Céline, Charbonnier, Camille, Grenier-Boley, Benjamin, Quenez, Olivier, Le Guennec, Kilan, Nicolas, Gaël, Chauhan, Ganesh, Wallon, David, Rousseau, Stéphane, Richard, Anne Claire et al. · 2017 · Neurobiology of Aging
- High-Throughput Analysis of Human Cytomegalovirus Genome Diversity Highlights the Widespread Occurrence of Gene-Disrupting Mutations and Pervasive RecombinationSteven Sijmons, Kim Thys, Mirabeau Mbong Ngwese, Ellen Van Damme, Jan Dvorak, Marnix Van Loock, Guangdi Li, Ruth Tachezy, Laurent Busson, Jeroen Aerssens et al. · 2015 · Journal of Virology
- Reductive Evolution of Bacterial Genome in Insect Gut EnvironmentNaruo Nikoh, Takahiro Hosokawa, Kenshiro Oshima, Masahira Hattori, Takema Fukatsu · 2011 · Genome Biology and Evolution
- Genome-wide signatures of complex introgression and adaptive evolution in the big catsHenrique Vieira Figueiró, Gang Li, Fernanda J. Trindade, Juliana Assis Geraldo, Fabiano Sviatopolk-Mirsky Pais, Gabriel da Rocha Fernandes, Sarah Helen Dias dos Santos, Graham M. Hughes, Aleksey S. Komissarov, Agostinho Antunes et al. · 2017 · Science Advances
- The Galleria mellonella Hologenome Supports Microbiota-Independent Metabolism of Long-Chain Hydrocarbon BeeswaxHyun Gi Kong, Hyun Ho Kim, Joon-hui Chung, JeHoon Jun, Soohyun Lee, Hak‐Min Kim, Sungwon Jeon, Seung Gu Park, Jong Bhak, Choong‐Min Ryu · 2019 · Cell Reports
- Variation in crossing-over rates across chromosome 4 of Arabidopsis thaliana reveals the presence of meiotic recombination “hot spots”Jan Drouaud, Christine Camilleri, Pierre-Yves Bourguignon, Aurélie Canaguier, Aurélie Berard, Daniel Vezon, Sandra Giancola, Dominique Brunel, Vincent Colot, Bernard Prum et al. · 2005 · Genome Research
- Two-Step Recruitment of RNA-Directed DNA Methylation to Tandem RepeatsSimon W.-L Chan, Xiaoyu Zhang, Yana V. Bernatavichute, Steven E. Jacobsen · 2006 · PLoS Biology
- Not all predicted CRISPR–Cas systems are equal: isolated cas genes and classes of CRISPR like elementsQuan Zhang, Yuzhen Ye · 2017 · BMC Bioinformatics
- Molecular Evolution of Chloroplast Genomes of Orchid Species: Insights into Phylogenetic Relationship and Adaptive EvolutionWan‐Lin Dong, Ruonan Wang, Na-Yao Zhang, Weibing Fan, Min-Feng Fang, Zhong‐Hu Li · 2018 · International Journal of Molecular Sciences
- The genomic landscape of 2,023 colorectal cancersAlex J. Cornish, Andreas J Gruber, Ben Kinnersley, Daniel Chubb, Anna Frangou, Giulio Caravagna, Boris Noyvert, Eszter Lakatos, Henry M. Wood, S. Thorn et al. · 2024 · Nature
- Genetic Dissection of Ethanol Tolerance in the Budding Yeast Saccharomyces cerevisiaeXiao Hu, Minghui Wang, T Tan, J R Li, Hongshun Yang, Lindsey J. Leach, Ruyue Zhang, Zewei Luo · 2006 · Genetics
- Mimosoid legume plastome evolution: IR expansion, tandem repeat expansions and accelerated rate of evolution in clpPDiana V. Dugas, David Hernandez, Erik J. M. Koenen, Erika N. Schwarz, Shannon C. K. Straub, Colin E. Hughes, Robert K. Jansen, Madhugiri Nageswara‐Rao, Martijn Staats, Joshua T. Trujillo et al. · 2015 · Scientific Reports
- Repetitive DNA sequence detection and its role in the human genomeXingyu Liao, Wufei Zhu, Juexiao Zhou, Haoyang Li, Xiaopeng Xu, Bin Zhang, Xin Gao · 2023 · Communications Biology
- Study of simple sequence repeat (SSR) markers from wheat expressed sequence tags (ESTs)Nathalie Nicot, V. Chiquet, B. Gandon, Laurence Amilhat, Fabrice Legeai, Philippe Leroy, M. Bernard, Pierre Sourdille · 2004 · Theoretical and Applied Genetics
- Protein-coding repeat polymorphisms strongly shape diverse human phenotypesMukamel, Ronen E., Handsaker, Robert E., Sherman, Maxwell A., Barton, Alison R., Zheng, Yiming, McCarroll, Steven A., Loh, Po-Ru · 2021 · Science
- Genome sequence and analysis of the Japanese morning glory Ipomoea nilAtsushi Hoshino, Vasanthan Jayakumar, Eiji Nitasaka, Atsushi Toyoda, Hideki Noguchi, Takehiko Itoh, Tadasu Shin‐I, Yohei Minakuchi, Yuki Koda, Atsushi J. Nagano et al. · 2016 · Nature Communications
- Chromosomal-level assembly of yellow catfish genome using third-generation DNA sequencing and Hi-C analysisGaorui Gong, Cheng Dan, Shijun Xiao, Wenjie Guo, Peipei Huang, Yang Xiong, Junjie Wu, Yan He, Jicheng Zhang, Xiaohui Li et al. · 2018 · GigaScience
- High-quality genome assembly and resequencing of modern cotton cultivars provide resources for crop improvementZhiying Ma, Yan Zhang, Liqiang Wu, Guiyin Zhang, Zhengwen Sun, Zhikun Li, Yafei Jiang, Huifeng Ke, Bin Chen, Zhengwen Liu et al. · 2021 · Nature Genetics
- Oil accumulation mechanisms of the oleaginous microalga Chlorella protothecoides revealed through its genome, transcriptomes, and proteomesGao, Chunfang, Wang, Yun, Shen, Yue, Yan, Dong, He, Xi, Dai, Junbiao, Wu, Qingyu · 2014 · BMC Genomics
- Global Genome and Transcriptome Analyses of Magnaporthe oryzae Epidemic Isolate 98-06 Uncover Novel Effectors and Pathogenicity-Related Genes, Revealing Gene Gain and Lose Dynamics in Genome EvolutionYanhan Dong, Ying Li, Miaomiao Zhao, Maofeng Jing, Xinyu Liu, Muxing Liu, Xianxian Guo, Xing Zhang, Yue Chen, Yongfeng Liu et al. · 2015 · PLoS Pathogens
- The role of variable DNA tandem repeats in bacterial adaptationKai Zhou, Abram Aertsen, Chris W. Michiels · 2013 · FEMS Microbiology Reviews
- Comparison of Multiple-Locus Variable-Number Tandem Repeat Analysis, Pulsed-Field Gel Electrophoresis, and Phage Typing for Subtype Analysis of Salmonella enterica Serotype EnteritidisDavid J. Boxrud, Kristin J. Pederson-Gulrud, Jason T. Wotton, Carlota Medus, Ewelina Lyszkowicz, John M. Besser, Joanne M. Bartkus · 2006 · Journal of Clinical Microbiology
- Gekko japonicus genome reveals evolution of adhesive toe pads and tail regenerationYan Liu, Qian Zhou, Yongjun Wang, Longhai Luo, Jian Min Yang, Linfeng Yang, Mei Liu, Yingrui Li, Tianmei Qian, Yuan Zheng et al. · 2015 · Nature Communications
- CRISPR-Sirius: RNA scaffolds for signal amplification in genome imagingHanhui Ma, Li‐Chun Tu, Ardalan Naseri, Yu-Chieh Chung, David Grünwald, Shaojie Zhang, Thoru Pederson · 2018 · Nature Methods
- An intronic GAA repeat expansion in FGF14 causes the autosomal-dominant adult-onset ataxia SCA27B/ATX-FGF14Haloom Rafehi, Justin L. Read, David J. Szmulewicz, Kayli C. Davies, Penny Snell, Liam G. Fearnley, Liam Scott, Mirja Thomsen, Greta Gillies, Kate Pope et al. · 2022 · The American Journal of Human Genetics
- Phylogenomic analyses provide insights into primate evolutionYong Shao, Long Zhou, Fang Li, Lan Zhao, Bao-Lin Zhang, Feng Shao, Jiawei Chen, Chunyan Chen, Xupeng Bi, Xiao-Lin Zhuang et al. · 2023 · Science
- Genome-Wide Identification of Human Functional DNA Using a Neutral Indel ModelGerton A. Lunter, Chris P. Ponting, Jotun Hein · 2006 · PLoS Computational Biology
- Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in ArabidopsisIkhlak Ahmed, Alexis Sarazin, Chris Bowler, Vincent Colot, Hadi Quesneville · 2011 · Nucleic Acids Research
- Reference genome assemblies reveal the origin and evolution of allohexaploid oatYuanying Peng, Honghai Yan, Laichun Guo, Chunlong Wang, Yubo Wang, Lipeng Kang, Lipeng Kang, Pingping Zhou, 余开全, Xiaolong Dong et al. · 2022 · Nature Genetics
- Genesis, effects and fates of repeats in prokaryotic genomesTodd J. Treangen, Anne‐Laure Abraham, Marie Touchon, Eduardo P. C. Rocha · 2009 · FEMS Microbiology Reviews
- Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishesXinxin You, Chao Bian, Qijie Zan, Xun Xu, Xin Liu, Jieming Chen, Jintu Wang, Ying Qiu, Wujiao Li, Xinhui Zhang et al. · 2014 · Nature Communications
- An Algorithm for Approximate Tandem RepeatsGad M. Landau, Jeanette P. Schmidt, Dina Sokol · 2001 · Journal of Computational Biology
- Evidence for extensive horizontal gene transfer from the draft genome of a tardigradeBoothby, Thomas C., Tenlen, Jennifer R., Smith, Frank W., Wang, Jeremy R., Patanella, Kiera A., Osborne Nishimura, Erin, Tintori, Sophia C., Li, Qing, Jones, Corbin D., Yandell, Mark et al. · 2015 · Proceedings of the National Academy of Sciences