Tandem repeats finder: a program to analyze DNA sequences

Benson, G.·1999·Nucleic Acids Research

Cited by (1,019)

Items 301–400 of 1,019

  1. TROLL—Tandem Repeat Occurrence Locator
    Adalberto T. Castelo, Wellington S. Martins, Guang R. Gao · 2002 · Bioinformatics
  2. Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution
    Jinfeng Chen, Quanfei Huang, Dongying Gao, Junyi Wang, Yongshan Lang, Bo Li, Bo Li, Zetao Bai, José Luis Goicoechea, Chengzhi Liang et al. · 2013 · Nature Communications
  3. A comprehensive draft genome sequence for lupin ( Lupinus angustifolius ), an emerging health food: insights into plant–microbe interactions and legume evolution
    James K. Hane, Yao Ming, Lars G. Kamphuis, Matthew N. Nelson, Gagan Garg, Craig Anthony Atkins, Philipp E. Bayer, Armando Bravo, Scott Bringans, Steven B. Cannon et al. · 2016 · Plant Biotechnology Journal
  4. Molecular typing methodologies for microbial source tracking and epidemiological investigations of Gram-negative bacterial foodborne pathogens☆
    Steven L. Foley, Aaron M. Lynne, Rajesh Nayak · 2009 · Infection Genetics and Evolution
  5. Satellite DNA evolution: old ideas, new approaches
    Sarah E. Lower, Michael P. McGurk, Andrew G. Clark, Daniel A. Barbash · 2018 · Current Opinion in Genetics & Development
  6. The report of my death was an exaggeration: A review for researchers using microsatellites in the 21st century
    Richard G.J. Hodel, Claudia Segovia Salcedo, Jacob B. Landis, Andrew A. Crowl, Miao Sun, Xiaoxian Liu, Matthew A. Gitzendanner, Norman Alan Douglas, Charlotte C. Germain‐Aubrey, Shichao Chen et al. · 2016 · Applications in Plant Sciences
  7. Minisatellites: Mutability and Genome Architecture
    Gilles Vergnaud, France Denœud · 2000 · Genome Research
  8. CEAS: cis-regulatory element annotation system
    X. Ji, Wei Li, Jun S. Song, Liping Wei, X. S. Liu · 2006 · Nucleic Acids Research
  9. Chromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered Scaffolding
    Shubha Vij, Heiner Kuhl, Inna S. Kuznetsova, Aleksey S. Komissarov, Andrey A. Yurchenko, Peter Van Heusden, Siddharth Singh, Natascha May Thevasagayam, Sai Rama Sridatta Prakki, Kathiresan Purushothaman et al. · 2016 · PLoS Genetics
  10. Genome Annotation Assessment in Drosophila melanogaster
    Martin G. Reese, George Hartzell, Nomi L. Harris, Uwe Ohler, Josep F. Abril, Suzanna Lewis · 2000 · Genome Research
  11. Critical association of ncRNA with introns
    David Rearick, Ashwin Prakash, A. John McSweeny, Samuel S. Shepard, Larisa V. Fedorova, Alexey N. Fedorov · 2010 · Nucleic Acids Research
  12. Genome Stability of Lyme Disease Spirochetes: Comparative Genomics of Borrelia burgdorferi Plasmids
    Sherwood Casjens, Emmanuel F. Mongodin, W.-G. Qiu, Benjamin J. Luft, Steven E. Schutzer, Eddie Bryan Gilcrease, Wai Mun Huang, Marija Vujadinovic, John K. Aron, Levy C Vargas et al. · 2012 · PLoS ONE
  13. Unique Features of the Loblolly Pine (Pinus taeda L.) Megagenome Revealed Through Sequence Annotation
    Jill Wegrzyn, John D Liechty, Kristian Stevens, Le‐Shin Wu, Carol A. Loopstra, Hans A. Vasquez-Gross, William M Dougherty, Brian Y Lin, Jacob J Zieve, Pedro J. Martínez‐García et al. · 2014 · Genetics
  14. Genomic legacy of the African cheetah, Acinonyx jubatus
    Dobrynin, Pavel, Liu, Shiping, Tamazian, Gaik, Xiong, Zijun, Yurchenko, Andrey A., Krasheninnikova, Ksenia, Kliver, Sergey, Schmidt-Küntzel, Anne, Koepfli, Klaus-Peter, Johnson, Warren et al. · 2015 · Genome Biology
  15. Complex modular architecture around a simple toolkit of wing pattern genes
    Steven M. Van Belleghem, Pasi M. A. Rastas, Alexie Papanicolaou, Simon H. Martin, Carlos F. Arias, Megan A. Supple, Joseph J. Hanly, James Mallet, James J. Lewis, Heather M. Hines et al. · 2017 · Nature Ecology & Evolution
  16. Repeat expansions confer WRN dependence in microsatellite-unstable cancers
    Niek van Wietmarschen, Sriram Sridharan, W. Nathan, Anthony T. Tubbs, Edmond M. Chan, E. Callen, Wei Wu, F. Belinky, Veenu Tripathi, N. Wong et al. · 2020 · Nature
  17. Sequence-based estimation of minisatellite and microsatellite repeat variability
    Matthieu Legendre, Nathalie L.M.M. Pochet, Theodore R. Pak, Kevin J. Verstrepen · 2007 · Genome Research
  18. Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads
    Human Genome Structural Variation Consortium, Porubsky, David, Ebert, Peter, Audano, Peter A., Vollger, Mitchell R., Harvey, William T., Marijon, Pierre, Ebler, Jana, Munson, Katherine M., Sorensen, Melanie et al. · 2021 · Nature Biotechnology
  19. The first draft of the pigeonpea genome sequence
    Nagendra Kumar Singh, Deepak Kumar Gupta, Pawan Kumar Jayaswal, Ajay Kumar Mahato, Sutapa Dutta, Sangeeta Singh, Shefali Bhutani, Vivek Dogra, Bikram Pratap Singh, Giriraj Kumawat et al. · 2011 · Journal of Plant Biochemistry and Biotechnology
  20. Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response Genes
    Leah K. McHale, William J. Haun, Wayne Wenzhong Xu, Pudota B. Bhaskar, Justin Anderson, David L. Hyten, Daniel J. Gerhardt, Jeffrey A. Jeddeloh, Robert M. Stupar · 2012 · PLANT PHYSIOLOGY
  21. New observations on maternal age effect on germline de novo mutations
    Wendy S.W. Wong, Benjamin D. Solomon, Dale L. Bodian, Prachi Kothiyal, Greg D. Eley, Kathi Huddleston, Robin Baker, Dzung Thach, Ramaswamy K. Iyer, Joseph G. Vockley et al. · 2016 · Nature Communications
  22. Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos
    Zhenhua Guo, Pengfei Ma, Guoqian Yang, Jin‐Yong Hu, Yun-Long Liu, Enhua Xia, Micai Zhong, Lei Zhao, Guiling Sun, Yuxing Xu et al. · 2019 · Molecular Plant
  23. Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-long
    Jinyang Zhang, Lingling Hou, Zhenqiang Zuo, Peifeng Ji, Xiaorong Zhang, Yuanchao Xue, Fangqing Zhao · 2021 · Nature Biotechnology
  24. Characterization of the Genomic Xist Locus in Rodents Reveals Conservation of Overall Gene Structure and Tandem Repeats but Rapid Evolution of Unique Sequence
    Tatyana B. Nesterova, S. Ya. Slobodyanyuk, Eugeny A. Elisaphenko, Alexander I. Shevchenko, Colette M. Johnston, Marina E. Pavlova, Igor B. Rogozin, Nikolay N. Kolesnikov, Neil Brockdorff, Suren M. Zakian · 2001 · Genome Research
  25. “A draft Musa balbisiana genome sequence for molecular genetics in polyploid, inter- and intra-specific Musa hybrids”
    Mark W. Davey, Ranganath Gudimella, Jennifer Ann Harikrishna, Wan Sin Lee, Norzulaani Khalid, J. Keulemans · 2013 · BMC Genomics
  26. Mutations in a new gene encoding a thiamine transporter cause thiamine-responsive megaloblastic anaemia syndrome
    George A. Diaz, Maryam Banikazemi, Kimihiko Oishi, Robert J. Desnick, Bruce D. Gelb · 1999 · Nature Genetics
  27. The Gene Mutated in Variant Late-Infantile Neuronal Ceroid Lipofuscinosis (CLN6) and in nclf Mutant Mice Encodes a Novel Predicted Transmembrane Protein
    Ruth B. Wheeler, Julie D. Sharp, Roger Alan Schultz, John M. Joslin, Ruth Elizabeth Williams, Sara Mole · 2002 · The American Journal of Human Genetics
  28. ExpansionHunter Denovo: a computational method for locating known and novel repeat expansions in short-read sequencing data
    Egor Dolzhenko, Mark F. Bennett, Phillip A. Richmond, Brett Trost, Sai Chen, Joke J.F.A. van Vugt, Charlotte M. Nguyen, Giuseppe Narzisi, Vladimir G. Gainullin, Andrew M. Gross et al. · 2020 · Genome biology
  29. The Complete Genome Sequence of the Plant Growth-Promoting Bacterium Pseudomonas sp. UW4
    Jin Duan, Wei Jiang, Zhenyu Cheng, John J. Heikkila, Bernard R. Glick · 2013 · PLoS ONE
  30. A new repeat-masking method enables specific detection of homologous sequences
    Martin C. Frith · 2010 · Nucleic Acids Research
  31. Genome sequence of the stramenopile Blastocystis, a human anaerobic parasite
    France Denœud, Michaël Roussel, Benjamin Noël, Ivan Wawrzyniak, Corinne Da Silva, Marie Diogon, Éric Viscogliosi, Céline Brochier‐Armanet, Arnaud Couloux, Julie Poulain et al. · 2011 · Genome biology
  32. Large-scale gene losses underlie the genome evolution of parasitic plant Cuscuta australis
    Guiling Sun, Yuxing Xu, Hui Liu, Ting Sun, Jingxiong Zhang, Christian Hettenhausen, Guojing Shen, Jinfeng Qi, Yan Qin, Jìng Li et al. · 2018 · Nature Communications
  33. Assembly and comparative analysis of the complete mitochondrial genome of Suaeda glauca
    Yan Cheng, Xiaoxue He, S. V. G. N. Priyadarshani, Yu Wang, Ye Li, Chao Shi, Kangzhuo Ye, Qiao Zhou, Ziqiang Luo, Fang Deng et al. · 2021 · BMC Genomics
  34. The evolutionary history of Neanderthal and Denisovan Y chromosomes
    Martin Petr, Mateja Hajdinjak, Qiaomei Fu, Elena Essel, Hélène Rougier, Isabelle Crèvecoeur, Patrick Semal, Liubov Vitalievna Golovanova, Vladimir Borisovich Doronichev, Carles Lalueza‐Fox et al. · 2020 · Science
  35. The Mitochondrial Genome of the Gymnosperm Cycas taitungensis Contains a Novel Family of Short Interspersed Elements, Bpu Sequences, and Abundant RNA Editing Sites
    Shu‐Miaw Chaw, Arthur Chun-Chieh Shih, D. Wang, Yu‐Wei Wu, S.-M. Liu, T.-Y. Chou · 2008 · Molecular Biology and Evolution
  36. Genomic signatures of mitonuclear coevolution across populations of Tigriopus californicus
    Felipe S. Barreto, Eric T. Watson, Thiago G. Lima, Christopher S. Willett, Suzanne Edmands, Weizhong Li, Ronald S. Burton · 2018 · Nature Ecology & Evolution
  37. Exceptional subgenome stability and functional divergence in the allotetraploid Ethiopian cereal teff
    Robert VanBuren, Ching Man Wai, Xuewen Wang, Jeremy Pardo, Alan E. Yocca, Hao Wang, Srinivasa Rao Chaluvadi, Guomin Han, Douglas W. Bryant, Patrick P. Edger et al. · 2020 · Nature Communications
  38. Regulation of human MAPT gene expression
    Marie‐Laure Caillet‐Boudin, Luc Buée, Nicolas Sergeant, Bruno Lefebvre · 2015 · Molecular Neurodegeneration
  39. The Complete Chloroplast Genome Sequence of Cephalotaxus oliveri (Cephalotaxaceae): Evolutionary Comparison of Cephalotaxus Chloroplast DNAs and Insights into the Loss of Inverted Repeat Copies in Gymnosperms
    Xuan Yi, Lei Gao, Bo Wang, Yingjuan Su, Ting Wang · 2013 · Genome Biology and Evolution
  40. Accelerated Evolution of the ASPM Gene Controlling Brain Size Begins Prior to Human Brain Expansion
    Natalay Kouprina, Adam Pavlı́ček, Ganeshwaran H. Mochida, Gregory G. Solomon, William Gersch, Young-Ho Yoon, Randall V. Collura, Maryellen Ruvolo, J. Carl Barrett, Christopher Geoffrey Woods et al. · 2004 · PLoS Biology
  41. Short tandem repeats bind transcription factors to tune eukaryotic gene expression
    Connor A. Horton, Amr M. Alexandari, Michael G.B. Hayes, Emil Marklund, Julia M. Schaepe, Arjun K. Aditham, Nilay Shah, Peter Suzuki, Avanti Shrikumar, Ariel Afek et al. · 2023 · Science
  42. In the name of the father: surnames and genetics
    Mark A. Jobling · 2001 · Trends in Genetics
  43. Characterization and expression profiles of miRNAs in rice seeds
    Liang‐Jiao Xue, Jingjing Zhang, Hong‐Wei Xue · 2008 · Nucleic Acids Research
  44. Single-Molecule Real-Time Sequencing Combined with Optical Mapping Yields Completely Finished Fungal Genome
    Luigi Faino, Michael F. Seidl, Erwin Datema, Grardy C. M. van den Berg, Antoine Janssen, Alexander H. J. Wittenberg, Bart P. H. J. Thomma · 2015 · mBio
  45. Highly contiguous assemblies of 101 drosophilid genomes
    Bernard Y. Kim, Jeremy Wang, Danny E. Miller, Olga Y. Barmina, Emily Delaney, Ammon Thompson, Aaron A. Comeault, David Peede, Emmanuel R. R. D’Agostino, Julianne Naomi Pelaez et al. · 2021 · eLife
  46. Telomere-to-telomere gapless chromosomes of banana using nanopore sequencing
    Caroline Belser, Franc‐Christophe Baurens, Benjamin Noël, Guillaume Martin, Corinne Cruaud, Benjamin Istace, Nabila Yahiaoui, Karine Labadie, Eva Hřibová, Jaroslav Doležel et al. · 2021 · Communications Biology
  47. TRDB--The Tandem Repeats Database
    Yevgeniy Gelfand, A. Rodriguez, Gary Benson · 2006 · Nucleic Acids Research
  48. Comparative Analysis of the Genomes of Two Field Isolates of the Rice Blast Fungus Magnaporthe oryzae
    Minfeng Xue, Jun Yang, Zhigang Li, Songnian Hu, Nan Yao, Ralph A. Dean, Wensheng Zhao, Mi Shen, Haiwang Zhang, Chao Li et al. · 2012 · PLoS Genetics
  49. Maternally Inherited Birk Barel Mental Retardation Dysmorphism Syndrome Caused by a Mutation in the Genomically Imprinted Potassium Channel KCNK9
    Ortal Barel, Stavit A. Shalev, Rivka Ofir, Asi Cohen, Joël Zlotogora, Zamir Shorer, Galia Mazor, Gal Finer, Shareef Khateeb, Noam Zilberberg et al. · 2008 · The American Journal of Human Genetics
  50. The First Symbiont-Free Genome Sequence of Marine Red Alga, Susabi-nori (Pyropia yezoensis)
    Yoji Nakamura, Naobumi V. Sasaki, Masahiro Kobayashi, Nobuhiko Ojima, Motoshige Yasuike, Yuya Shigenobu, Masataka Satomi, Yoshiya Fukuma, Koji Shiwaku, Atsumi Tsujimoto et al. · 2013 · PLoS ONE
  51. A Dual Origin of the Xist Gene from a Protein-Coding Gene and a Set of Transposable Elements
    Eugeny A. Elisaphenko, Nikolay N. Kolesnikov, Alexander I. Shevchenko, Igor B. Rogozin, Tatyana B. Nesterova, Neil Brockdorff, Suren M. Zakian · 2008 · PLoS ONE
  52. The Genome of Canarypox Virus
    E. R. Tulman, Claudio L. Afonso, Zhiqiang Lu, Laszlo Zsak, G. F. Kutish, Daniel L. Rock · 2003 · Journal of Virology
  53. ADAPTIVE POPULATION DIFFERENTIATION IN PHENOLOGY ACROSS A LATITUDINAL GRADIENT IN EUROPEAN ASPEN (POPULUS TREMULA, L.): A COMPARISON OF NEUTRAL MARKERS, CANDIDATE GENES AND PHENOTYPIC TRAITS
    David Hall, Virginia Luquez, Victoria M. Garcia, Kate R. St Onge, Stefan Jansson, Pär K. Ingvarsson · 2007 · Evolution
  54. Multilocus Variable-Number Tandem Repeat AnalysisDistinguishes Outbreak and Sporadic Escherichia coli O157:H7Isolates
    Anna C. Noller, Mary Catherine McEllistrem, Antônio Guilherme Pacheco, David J. Boxrud, Lee H. Harrison · 2003 · Journal of Clinical Microbiology
  55. Comprehensive genetic diagnosis of tandem repeat expansion disorders with programmable targeted nanopore sequencing
    Igor Stevanovski, Sanjog R. Chintalaphani, Hasindu Gamaarachchi, James M. Ferguson, Sandy S. Pineda, Carolin K. Scriba, Michel C. Tchan, Victor S.C. Fung, Karl Ng, Andrea Cortese et al. · 2022 · Science Advances
  56. African lungfish genome sheds light on the vertebrate water-to-land transition
    Wang, Kun, Wang, Jun, Zhu, Chenglong, Yang, Liandong, Ren, Yandong, Ruan, Jue, Fan, Guangyi, Hu, Jiang, Xu, Wenjie, Bi, Xupeng et al. · 2021 · Cell
  57. High resolution, on-line identification of strains from the Mycobacterium tuberculosis complex based on tandem repeat typing
    Philippe Le Flèche, M. Fabre, France Denœud, Jean‐Louis Koeck, Gilles Vergnaud · 2002 · BMC Microbiology
  58. Expanding the CRISPR imaging toolset withStaphylococcus aureusCas9 for simultaneous imaging of multiple genomic loci
    Baohui Chen, Jeffrey Hu, Ricardo Almeida, Harrison Liu, Sanjeev Balakrishnan, Christian Covill‐Cooke, Wendell A. Lim, Bo Huang · 2016 · Nucleic Acids Research
  59. The draft genome of Tibetan hulless barley reveals adaptive patterns to the high stressful Tibetan Plateau
    Xingquan Zeng, Hai Long, Zhuo Wang, Shancen Zhao, Yawei Tang, Zhiyong Huang, Yulin Wang, Qijun Xu, Likai Mao, Guangbing Deng et al. · 2015 · Proceedings of the National Academy of Sciences
  60. Complete Chloroplast Genome of Nicotiana otophora and its Comparison with Related Species
    Sajjad Asaf, Abdul Latif Khan, Abdur Rahim Khan, Muhammad Waqas, ⋅Sang-Mo Kang, Muhammad Aaqil Khan, Seok-Min Lee, In‐Jung Lee · 2016 · Frontiers in Plant Science
  61. Morphology and genome of a snailfish from the Mariana Trench provide insights into deep-sea adaptation
    Kun Wang, Yanjun Shen, Yongzhi Peter Yang, Xiaoni Gan, Guichun Liu, Kuang Hu, Yongxin Li, Zhaoming Gao, Li Zhu, Guoyong Yan et al. · 2019 · Nature Ecology & Evolution
  62. T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithm
    Julien Jorda, Andrey V. Kajava · 2009 · Bioinformatics
  63. Genetic basis of ruminant headgear and rapid antler regeneration
    Yu Wang, Chenzhou Zhang, Nini Wang, Zhipeng Li, Rasmus Heller, Rong Liu, Yue Zhao, Jiangang Han, Xiangyu Pan, Zhuqing Zheng et al. · 2019 · Science
  64. Pan-genome bridges wheat structural variations with habitat and breeding
    Chengzhi Jiao, Xiaoming Xie, Chenyang Hao, Liyang Chen, Yuxin Xie, Vanika Garg, Li Juan Zhao, Zihao Wang, Yuqi Zhang, Tian Li et al. · 2024 · Nature
  65. Identification and characterisation of novel human Y-chromosomal microsatellites from sequence database information
    Qasim Ayub · 2000 · Nucleic Acids Research
  66. The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin
    Christopher D. Smith, Shengqiang Shu, Chris Mungall, Gary H. Karpen · 2007 · Science
  67. PLA2G6 Mutation Underlies Infantile Neuroaxonal Dystrophy
    Shareef Khateeb, Hagit Flusser, Rivka Ofir, Ilan Shelef, Ginat Narkis, Gideon Vardi, Zamir Shorer, Rachel Lévy, Aharon Galil, Khalil Elbedour et al. · 2006 · The American Journal of Human Genetics
  68. Contribution to Alzheimer's disease risk of rare variants in TREM2, SORL1, and ABCA7 in 1779 cases and 1273 controls
    Bellenguez, Céline, Charbonnier, Camille, Grenier-Boley, Benjamin, Quenez, Olivier, Le Guennec, Kilan, Nicolas, Gaël, Chauhan, Ganesh, Wallon, David, Rousseau, Stéphane, Richard, Anne Claire et al. · 2017 · Neurobiology of Aging
  69. High-Throughput Analysis of Human Cytomegalovirus Genome Diversity Highlights the Widespread Occurrence of Gene-Disrupting Mutations and Pervasive Recombination
    Steven Sijmons, Kim Thys, Mirabeau Mbong Ngwese, Ellen Van Damme, Jan Dvorak, Marnix Van Loock, Guangdi Li, Ruth Tachezy, Laurent Busson, Jeroen Aerssens et al. · 2015 · Journal of Virology
  70. Reductive Evolution of Bacterial Genome in Insect Gut Environment
    Naruo Nikoh, Takahiro Hosokawa, Kenshiro Oshima, Masahira Hattori, Takema Fukatsu · 2011 · Genome Biology and Evolution
  71. Genome-wide signatures of complex introgression and adaptive evolution in the big cats
    Henrique Vieira Figueiró, Gang Li, Fernanda J. Trindade, Juliana Assis Geraldo, Fabiano Sviatopolk-Mirsky Pais, Gabriel da Rocha Fernandes, Sarah Helen Dias dos Santos, Graham M. Hughes, Aleksey S. Komissarov, Agostinho Antunes et al. · 2017 · Science Advances
  72. The Galleria mellonella Hologenome Supports Microbiota-Independent Metabolism of Long-Chain Hydrocarbon Beeswax
    Hyun Gi Kong, Hyun Ho Kim, Joon-hui Chung, JeHoon Jun, Soohyun Lee, Hak‐Min Kim, Sungwon Jeon, Seung Gu Park, Jong Bhak, Choong‐Min Ryu · 2019 · Cell Reports
  73. Variation in crossing-over rates across chromosome 4 of Arabidopsis thaliana reveals the presence of meiotic recombination “hot spots”
    Jan Drouaud, Christine Camilleri, Pierre-Yves Bourguignon, Aurélie Canaguier, Aurélie Berard, Daniel Vezon, Sandra Giancola, Dominique Brunel, Vincent Colot, Bernard Prum et al. · 2005 · Genome Research
  74. Two-Step Recruitment of RNA-Directed DNA Methylation to Tandem Repeats
    Simon W.-L Chan, Xiaoyu Zhang, Yana V. Bernatavichute, Steven E. Jacobsen · 2006 · PLoS Biology
  75. Not all predicted CRISPR–Cas systems are equal: isolated cas genes and classes of CRISPR like elements
    Quan Zhang, Yuzhen Ye · 2017 · BMC Bioinformatics
  76. Molecular Evolution of Chloroplast Genomes of Orchid Species: Insights into Phylogenetic Relationship and Adaptive Evolution
    Wan‐Lin Dong, Ruonan Wang, Na-Yao Zhang, Weibing Fan, Min-Feng Fang, Zhong‐Hu Li · 2018 · International Journal of Molecular Sciences
  77. The genomic landscape of 2,023 colorectal cancers
    Alex J. Cornish, Andreas J Gruber, Ben Kinnersley, Daniel Chubb, Anna Frangou, Giulio Caravagna, Boris Noyvert, Eszter Lakatos, Henry M. Wood, S. Thorn et al. · 2024 · Nature
  78. Genetic Dissection of Ethanol Tolerance in the Budding Yeast Saccharomyces cerevisiae
    Xiao Hu, Minghui Wang, T Tan, J R Li, Hongshun Yang, Lindsey J. Leach, Ruyue Zhang, Zewei Luo · 2006 · Genetics
  79. Mimosoid legume plastome evolution: IR expansion, tandem repeat expansions and accelerated rate of evolution in clpP
    Diana V. Dugas, David Hernandez, Erik J. M. Koenen, Erika N. Schwarz, Shannon C. K. Straub, Colin E. Hughes, Robert K. Jansen, Madhugiri Nageswara‐Rao, Martijn Staats, Joshua T. Trujillo et al. · 2015 · Scientific Reports
  80. Repetitive DNA sequence detection and its role in the human genome
    Xingyu Liao, Wufei Zhu, Juexiao Zhou, Haoyang Li, Xiaopeng Xu, Bin Zhang, Xin Gao · 2023 · Communications Biology
  81. Study of simple sequence repeat (SSR) markers from wheat expressed sequence tags (ESTs)
    Nathalie Nicot, V. Chiquet, B. Gandon, Laurence Amilhat, Fabrice Legeai, Philippe Leroy, M. Bernard, Pierre Sourdille · 2004 · Theoretical and Applied Genetics
  82. Protein-coding repeat polymorphisms strongly shape diverse human phenotypes
    Mukamel, Ronen E., Handsaker, Robert E., Sherman, Maxwell A., Barton, Alison R., Zheng, Yiming, McCarroll, Steven A., Loh, Po-Ru · 2021 · Science
  83. Genome sequence and analysis of the Japanese morning glory Ipomoea nil
    Atsushi Hoshino, Vasanthan Jayakumar, Eiji Nitasaka, Atsushi Toyoda, Hideki Noguchi, Takehiko Itoh, Tadasu Shin‐I, Yohei Minakuchi, Yuki Koda, Atsushi J. Nagano et al. · 2016 · Nature Communications
  84. Chromosomal-level assembly of yellow catfish genome using third-generation DNA sequencing and Hi-C analysis
    Gaorui Gong, Cheng Dan, Shijun Xiao, Wenjie Guo, Peipei Huang, Yang Xiong, Junjie Wu, Yan He, Jicheng Zhang, Xiaohui Li et al. · 2018 · GigaScience
  85. High-quality genome assembly and resequencing of modern cotton cultivars provide resources for crop improvement
    Zhiying Ma, Yan Zhang, Liqiang Wu, Guiyin Zhang, Zhengwen Sun, Zhikun Li, Yafei Jiang, Huifeng Ke, Bin Chen, Zhengwen Liu et al. · 2021 · Nature Genetics
  86. Oil accumulation mechanisms of the oleaginous microalga Chlorella protothecoides revealed through its genome, transcriptomes, and proteomes
    Gao, Chunfang, Wang, Yun, Shen, Yue, Yan, Dong, He, Xi, Dai, Junbiao, Wu, Qingyu · 2014 · BMC Genomics
  87. Global Genome and Transcriptome Analyses of Magnaporthe oryzae Epidemic Isolate 98-06 Uncover Novel Effectors and Pathogenicity-Related Genes, Revealing Gene Gain and Lose Dynamics in Genome Evolution
    Yanhan Dong, Ying Li, Miaomiao Zhao, Maofeng Jing, Xinyu Liu, Muxing Liu, Xianxian Guo, Xing Zhang, Yue Chen, Yongfeng Liu et al. · 2015 · PLoS Pathogens
  88. The role of variable DNA tandem repeats in bacterial adaptation
    Kai Zhou, Abram Aertsen, Chris W. Michiels · 2013 · FEMS Microbiology Reviews
  89. Comparison of Multiple-Locus Variable-Number Tandem Repeat Analysis, Pulsed-Field Gel Electrophoresis, and Phage Typing for Subtype Analysis of Salmonella enterica Serotype Enteritidis
    David J. Boxrud, Kristin J. Pederson-Gulrud, Jason T. Wotton, Carlota Medus, Ewelina Lyszkowicz, John M. Besser, Joanne M. Bartkus · 2006 · Journal of Clinical Microbiology
  90. Gekko japonicus genome reveals evolution of adhesive toe pads and tail regeneration
    Yan Liu, Qian Zhou, Yongjun Wang, Longhai Luo, Jian Min Yang, Linfeng Yang, Mei Liu, Yingrui Li, Tianmei Qian, Yuan Zheng et al. · 2015 · Nature Communications
  91. CRISPR-Sirius: RNA scaffolds for signal amplification in genome imaging
    Hanhui Ma, Li‐Chun Tu, Ardalan Naseri, Yu-Chieh Chung, David Grünwald, Shaojie Zhang, Thoru Pederson · 2018 · Nature Methods
  92. An intronic GAA repeat expansion in FGF14 causes the autosomal-dominant adult-onset ataxia SCA27B/ATX-FGF14
    Haloom Rafehi, Justin L. Read, David J. Szmulewicz, Kayli C. Davies, Penny Snell, Liam G. Fearnley, Liam Scott, Mirja Thomsen, Greta Gillies, Kate Pope et al. · 2022 · The American Journal of Human Genetics
  93. Phylogenomic analyses provide insights into primate evolution
    Yong Shao, Long Zhou, Fang Li, Lan Zhao, Bao-Lin Zhang, Feng Shao, Jiawei Chen, Chunyan Chen, Xupeng Bi, Xiao-Lin Zhuang et al. · 2023 · Science
  94. Genome-Wide Identification of Human Functional DNA Using a Neutral Indel Model
    Gerton A. Lunter, Chris P. Ponting, Jotun Hein · 2006 · PLoS Computational Biology
  95. Genome-wide evidence for local DNA methylation spreading from small RNA-targeted sequences in Arabidopsis
    Ikhlak Ahmed, Alexis Sarazin, Chris Bowler, Vincent Colot, Hadi Quesneville · 2011 · Nucleic Acids Research
  96. Reference genome assemblies reveal the origin and evolution of allohexaploid oat
    Yuanying Peng, Honghai Yan, Laichun Guo, Chunlong Wang, Yubo Wang, Lipeng Kang, Lipeng Kang, Pingping Zhou, 余开全, Xiaolong Dong et al. · 2022 · Nature Genetics
  97. Genesis, effects and fates of repeats in prokaryotic genomes
    Todd J. Treangen, Anne‐Laure Abraham, Marie Touchon, Eduardo P. C. Rocha · 2009 · FEMS Microbiology Reviews
  98. Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes
    Xinxin You, Chao Bian, Qijie Zan, Xun Xu, Xin Liu, Jieming Chen, Jintu Wang, Ying Qiu, Wujiao Li, Xinhui Zhang et al. · 2014 · Nature Communications
  99. An Algorithm for Approximate Tandem Repeats
    Gad M. Landau, Jeanette P. Schmidt, Dina Sokol · 2001 · Journal of Computational Biology
  100. Evidence for extensive horizontal gene transfer from the draft genome of a tardigrade
    Boothby, Thomas C., Tenlen, Jennifer R., Smith, Frank W., Wang, Jeremy R., Patanella, Kiera A., Osborne Nishimura, Erin, Tintori, Sophia C., Li, Qing, Jones, Corbin D., Yandell, Mark et al. · 2015 · Proceedings of the National Academy of Sciences