Tandem repeats finder: a program to analyze DNA sequences

Benson, G.·1999·Nucleic Acids Research

Cited by (1,019)

Items 801–900 of 1,019

  1. Comparative analysis of human masculinity.
    Bejon Kumar Bhowmick, Naoyuki Takahata, Motomu Watanabe, Yoko Satta · 2006 · PubMed
  2. High tandem repeat content in the genome of the short-lived annual fish Nothobranchius furzeri: a new vertebrate model for aging research
    Kathrin Reichwald, Chris Lauber, Indrajit Nanda, Jeanette Kirschner, Nils Hartmann, Susanne Schories, Ulrike Gausmann, Stefan Taudien, Markus B. Schilhabel, Karol Szafranski et al. · 2009 · Genome biology
  3. Interrogating the “unsequenceable” genomic trinucleotide repeat disorders by long-read sequencing
    Qian Liu, Peng Zhang, Depeng Wang, Weihong Gu, Kai Wang · 2017 · Genome Medicine
  4. An intronic VNTR affects splicing of ABCA7 and increases risk of Alzheimer’s disease
    On Behalf of the BELNEU Consortium, De Roeck, Arne, Duchateau, Lena, Van Dongen, Jasper, Cacace, Rita, Bjerke, Maria, Van den Bossche, Tobi, Cras, Patrick, Vandenberghe, Rik, De Deyn, Peter P. et al. · 2018 · Acta Neuropathologica
  5. The complete chloroplast genome sequence of the relict woody plant Metasequoia glyptostroboides Hu et Cheng
    Jinhui Chen, Zhaodong Hao, Haibin Xu, Liming Yang, Guangxin Liu, Yu Sheng, Chen Zheng, Weiwei Zheng, Tielong Cheng, Jisen Shi · 2015 · Frontiers in Plant Science
  6. Genome and transcriptome of the regeneration-competent flatworm, Macrostomum lignano
    Kaja A. Wasik, James Gurtowski, Xin Zhou, Olivia Mendivil Ramos, M. Joaquina Delàs, Giorgia Battistoni, Osama E. Demerdash, Ilaria Falciatori, Dita B. Vizoso, Andrew D. Smith et al. · 2015 · Proceedings of the National Academy of Sciences
  7. Assembly and Validation of the Genome of the Nonmodel Basal Angiosperm Amborella
    Srikar Chamala, André S. Chanderbali, Joshua P. Der, Tianying Lan, Brandon Walts, Victor A. Albert, Claude W. dePamphilis, Jim Leebens‐Mack, Steve Rounsley, Stephan Christoph Schuster et al. · 2013 · Science
  8. A Comprehensive Description and Evolutionary Analysis of 22 Grouper (Perciformes, Epinephelidae) Mitochondrial Genomes with Emphasis on Two Novel Genome Organizations
    Xuan Zhuang, Meng Qu, Xiang Zhang, Shaoxiong Ding · 2013 · PLoS ONE
  9. High nrDNA ITS polymorphism in the ancient extant seed plant Cycas: Incomplete concerted evolution and the origin of pseudogenes
    Long-Qian Xiao, Michael Möller, Hua Zhu · 2009 · Molecular Phylogenetics and Evolution
  10. Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia
    Zhemin Zhou, Inge K. C. Lundstrøm, Alicia Tran-Dien, Sebastián Duchêne, Nabil-Fareed Alikhan, Martin J. Sergeant, Gemma C. Langridge, Anna K. Fotakis, Satheesh Nair, Hans Kristen Stenoien et al. · 2018 · Current Biology
  11. Molecular Typing of Salmonella enterica Serovar Typhi Isolates from Various Countries in Asia by a Multiplex PCR Assay on Variable-Number Tandem Repeats
    Yi‐Chun Liu, May-Ann Lee, Eng Eong Ooi, Yeo Mavis, Ai‐Ling Tan, Hung‐Hiang Quek · 2003 · Journal of Clinical Microbiology
  12. Structure, Function, and Phylogeny of the Mating Locus in the Rhizopus oryzae Complex
    Andrii P. Gryganskyi, Soo Chan Lee, Anastasia P. Litvintseva, Matthew E. Smith, Gregory M Bonito, Teresita M. Porter, Iryna M. Anishchenko, Joseph Heitman, Rytas J. Vilgalys · 2010 · PLoS ONE
  13. Shared and species-specific features among ichnovirus genomes
    Kohjiro Tanaka, Renée Lapointe, Walter E. Barney, Andrea M. Makkay, Don Stoltz, Michel Cusson, Bruce A. Webb · 2007 · Virology
  14. Review of disrupted sleep patterns in Smith–Magenis syndrome and normal melatonin secretion in a patient with an atypical interstitial 17p11.2 deletion
    Boudreau, Eilis A., Johnson, Kyle P., Jackman, Angela R., Blancato, Jan, Huizing, Marjan, Bendavid, Claude, Jones, MaryPat, Chandrasekharappa, Settara C., Lewy, Alfred J., Smith, Ann C.M. et al. · 2009 · American Journal of Medical Genetics Part A
  15. Comparative genomic analysis of six Glossina genomes, vectors of African trypanosomes
    Geoffrey Michael Attardo, Adly M. M. Abd‐Alla, Álvaro Acosta-Serrano, James E. Allen, Rosemary Bateta, Joshua B. Benoit, Kostas Bourtzis, Jelle Caers, Guy Caljon, Mikkel B. Christensen et al. · 2019 · Genome biology
  16. Comparative chloroplast genomes: insights into the evolution of the chloroplast genome of Camellia sinensis and the phylogeny of Camellia
    Li Li, Yunfei Hu, Min He, Bo Zhang, Wei Wu, Pumo Cai, Da Huo, Yongcong Hong · 2021 · BMC Genomics
  17. Gapless indica rice genome reveals synergistic contributions of active transposable elements and segmental duplications to rice genome evolution.
    Kui Li, Wenkai Jiang, Yuanyuan Hui, Meng-Juan Kong, Li-Ying Feng, Li-Zhi Gao, Peng-Fu Li, Shan Lu · 2021 · Molecular Plant
  18. Gene-rich UV sex chromosomes harbor conserved regulators of sexual development
    Sarah B. Carey, Jerry W. Jenkins, John T. Lovell, Florian Maumus, Avinash Sreedasyam, Adam C. Payton, Shengqiang Shu, George P. Tiley, Noé Fernández‐Pozo, Adam L. Healey et al. · 2021 · Science Advances
  19. Large-scale sorting of C. elegans embryos reveals the dynamics of small RNA expression
    Marlon Stoeckius, Jonas Maaskola, Teresa Colombo, Hans-Peter Rahn, Marc R. Friedländer, Na Li, Wei Chen, Fabio Piano, Nikolaus Rajewsky · 2009 · Nature Methods
  20. Detecting microsatellites within genomes: significant variation among algorithms
    Sébastien Leclercq, Éric Rivals, Philippe Jarne · 2007 · BMC Bioinformatics
  21. Molecular analysis of 20 patients with 2q37.3 monosomy: definition of minimum deletion intervals for key phenotypes
    Micheala A. Aldred, R O C Sanford, Nicholas Simon Thomas, M A Barrow, Louise C. Wilson, Louise A. Brueton, María Clara Bonaglia, Raoul C. M. Hennekam, Charis Eng, N R Dennis et al. · 2004 · Journal of Medical Genetics
  22. Association study of a SNAP-25 microsatellite and attention deficit hyperactivity disorder.
    J. Mill, S. Curran, L. Kent, A. Gould, L. Huckett, S. Richards, E. Taylor, P. Asherson · 2002 · American journal of medical genetics
  23. Function and evolution of local repeats in the Firre locus
    Ezgi Hacisuleyman, Chinmay J. Shukla, Catherine L. Weiner, John L. Rinn · 2016 · Nature Communications
  24. Draft Genome of the Wheat Rust Pathogen ( Puccinia triticina) Unravels Genome-Wide Structural Variations during Evolution
    Kanti Kiran, Hukam Chand Rawal, Himanshu Dubey, Rajdeep Jaswal, B. N. Devanna, Deepak Kumar Gupta, Subhash Chander Bhardwaj, Pramod Prasad, Dharam Pal, Parveen Chhuneja et al. · 2016 · Genome Biology and Evolution
  25. Fluctuations in Fabaceae mitochondrial genome size and content are both ancient and recent
    In‐Su Choi, Erika N. Schwarz, Tracey A. Ruhlman, Mohammad Ahmed Khiyami, Jamal S. M. Sabir, Nahid H. Hajarah, Mernan J. Sabir, Samar Rabah, Robert K. Jansen · 2019 · BMC Plant Biology
  26. Comprehensive genomic resources related to domestication and crop improvement traits in Lima bean
    Tatiana Paola Pérez García, Jorge Duitama, Stephanie Smolenski Zullo, Juanita Gil, Andrea Ariani, Sarah Dohle, Antonia Palkovic, Paola Skeen, Clara Isabel Bermúdez-Santana, Daniel G. Debouck et al. · 2021 · Nature Communications
  27. Recurrent chromosome reshuffling and the evolution of neo-sex chromosomes in parrots
    Zhen J. Huang, Ivanete de Oliveira Furo, Jing Liu, Valentina Peona, Anderson José Baía Gomes, Wan Cen, Hao Huang, Yanding Zhang, Duo Chen, Ting Xue et al. · 2022 · Nature Communications
  28. Comparative and phylogenetic analyses of six Kenya Polystachya (Orchidaceae) species based on the complete chloroplast genome sequences
    Hui Jiang, Jing Tian, Jiaxin Yang, Xiang Dong, Zhixiang Zhong, Geoffrey Mwachala, Caifei Zhang, Guang‐Wan Hu, Qingfeng Wang · 2022 · BMC Plant Biology
  29. TRASH: Tandem Repeat Annotation and Structural Hierarchy
    Piotr Włodzimierz, Michael Hong, Ian R. Henderson · 2023 · Bioinformatics
  30. Fourteen polymorphic microsatellite DNA markers for the human malaria parasite Plasmodium vivax
    Nadira Darshani Karunaweera, Marcelo U. Ferreira, Daniel L. Hartl, Dyann F. Wirth · 2006 · Molecular Ecology Notes
  31. Development of unigene-derived SSR markers in cowpea (Vigna unguiculata) and their transferability to otherVignaspecies
    Sangeeta Kumari Gupta, T. Gopalakrishna · 2010 · Genome
  32. A panel of microsatellite and minisatellite markers for the characterisation of field isolates of Theileria parva
    Chris A. L. Oura, David Odongo, George William Lubega, Paul R Spooner, Andrew Tait, Richard P. Bishop · 2003 · International Journal for Parasitology
  33. Comparative Genomic Analysis of Three Strains of Ehrlichia ruminantium Reveals an Active Process of Genome Size Plasticity
    Roger Frutos, Alain Viari, Conchita Ferraz, Anne Morgat, Sophie Vidal-Eychenié, Yane Kandassamy, Isabelle Chantal, Albert Bensaïd, Éric Coissac, Nathalie Vachiéry et al. · 2006 · Journal of Bacteriology
  34. The complete mitochondrial genome of the Chinese oak silkmoth, Antheraea pernyi (Lepidoptera: Saturniidae)
    Yan‐Qun Liu, Yuping Li, Min‐Hui Pan, Fangyin Dai, Xuwei Zhu, Cheng Lu, Zhonghuai Xiang · 2008 · Acta Biochimica et Biophysica Sinica
  35. Evaluation of the Polymorphisms Associated with Tandem Repeats for Pseudomonas aeruginosa Strain Typing
    Lucie Onteniente, Sylvain Brisse, Panayotis T. Tassios, Gilles Vergnaud · 2003 · Journal of Clinical Microbiology
  36. Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations
    François Sabot, Romain Guyot, Thomas Wicker, Nathalie Chantret, Bastien Laubin, Boulos Chalhoub, Philippe Leroy, Pierre Sourdille, Michel Bernard · 2005 · Molecular Genetics and Genomics
  37. A Belgian ancestral haplotype harbours a highly prevalent mutation for 17q21-linked tau-negative FTLD
    van der Zee, Julie, Rademakers, Rosa, Engelborghs, Sebastiaan, Gijselinck, Ilse, Bogaerts, Veerle, Vandenberghe, Rik, Santens, Patrick, Caekebeke, Jo, De Pooter, Tim, Peeters, Karin et al. · 2006 · Brain
  38. The Complete Mitochondrial Genome ofCtenoptilum vasava(Lepidoptera: Hesperiidae: Pyrginae) and Its Phylogenetic Implication
    Jiasheng Hao, Qianqian Sun, Huabin Zhao, Xiaoyan Sun, Yonghua Gai, Qun Yang · 2012 · Comparative and Functional Genomics
  39. Multiple-Locus Variable-Number Tandem-Repeat Analysis as a Tool for Subtyping Listeria monocytogenes Strains
    Katharine E. Volpe Sperry, Sophia Kathariou, Justin S. Edwards, Leslie A. Wolf · 2008 · Journal of Clinical Microbiology
  40. Comparative Chloroplast Genome Analyses of Species in Gentiana section Cruciata (Gentianaceae) and the Development of Authentication Markers
    Tao Zhou, Jian Wang, Yun Shu Jia, Wenli Li, Fusheng Xu, Xumei Wang · 2018 · International Journal of Molecular Sciences
  41. A high-quality sponge gourd (Luffa cylindrica) genome
    Haibin Wu, Gangjun Zhao, Hao Gong, Junxing Li, Caixia Luo, Xiaoli He, Shaobo Luo, Xiaoming Zheng, Xiaoxi Liu, Jinju Guo et al. · 2020 · Horticulture Research
  42. Construction of a chromosome‐level genome and variation map for the Pacific oyster Crassostrea gigas
    Haigang Qi, Li Li, Guofan Zhang · 2021 · Molecular Ecology Resources
  43. The Chinese mitten crab genome provides insights into adaptive plasticity and developmental regulation
    Zhaoxia Cui, Yuan Liu, Jianbo Yuan, Xiaojun Zhang, Tomer Ventura, Ka Yan Ma, Shuai Sun, Chengwen Song, Dongliang Zhan, Yanan Yang et al. · 2021 · Nature Communications
  44. Three chromosome-level duck genome assemblies provide insights into genomic variation during domestication
    Feng Zhu, Zhongtao Yin, Zheng Wang, Jacqueline Smith, Fan Zhang, Fergal J. Martin, Denye Nathaniel Ogeh, Maxwell T. Hincke, Fang-Bing Lin, David W. Burt et al. · 2021 · Nature Communications
  45. An AI Agent for Fully Automated Multi‐Omic Analyses
    Juexiao Zhou, Bin Zhang, Guowei Li, Xiuying Chen, Haoyang Li, Xiaopeng Xu, Siyuan Chen, Wenjia He, Chencheng Xu, Liwei Liu et al. · 2024 · Advanced Science
  46. The Complete Mitochondrial Genomes of Six Heterodont Bivalves (Tellinoidea and Solenoidea): Variable Gene Arrangements and Phylogenetic Implications
    Yang Yuan, Qi Li, Hong Yu, Lingfeng Kong · 2012 · PLoS ONE
  47. Impact of whole genome amplification on analysis of copy number variants
    Trevor J. Pugh, Allen D. Delaney, Noushin Rahnamay Farnoud, Stéphane Flibotte, Malachi Griffith, H. I. Li, H. Qian, Pedro Farinha, Randy D. Gascoyne, Marco A. Marra · 2008 · Nucleic Acids Research
  48. The DNA sequence and analysis of human chromosome 13
    Andrew Dunham, Lucy H. Matthews, J. Burton, Jennifer L. Ashurst, Kevin Howe, Kevin J. Ashcroft, David M. Beare, Deborah C. Burford, Sarah E Hunt, Sam Griffiths‐Jones et al. · 2004 · Nature
  49. Sequence complexity profiles of prokaryotic genomic sequences: A fast algorithm for calculating linguistic complexity
    Olga G. Troyanskaya, Ora Arbell, Yair Koren, Gad M. Landau, Alexander Bolshoy · 2002 · Bioinformatics
  50. RepARK—de novo creation of repeat libraries from whole-genome NGS reads
    Philipp Koch, Matthias Platzer, Bryan Downie · 2014 · Nucleic Acids Research
  51. The Discovery of Wild Date Palms in Oman Reveals a Complex Domestication History Involving Centers in the Middle East and Africa
    Muriel Gros‐Balthazard, Marco Galimberti, Athanasios Kousathanas, Claire Newton, Sarah Ivorra, Laure Paradis, Yves Vigouroux, Robert Andrew Carter, Margareta Tengberg, Vincent Battesti et al. · 2017 · Current Biology
  52. The Complete Chloroplast Genomes of Six Ipomoea Species and Indel Marker Development for the Discrimination of Authentic Pharbitidis Semen (Seeds of I. nil or I. purpurea)
    Inkyu Park, Sungyu Yang, Wook J. Kim, Pureum Noh, Hyun O. Lee, Byeong Cheol Moon · 2018 · Frontiers in Plant Science
  53. Complete chloroplast genome sequence of Fagopyrum dibotrys: genome features, comparative analysis and phylogenetic relationships
    Xumei Wang, Tao Zhou, Guoqing Bai, Yuemei Zhao · 2018 · Scientific Reports
  54. Development of Candida auris Short Tandem Repeat Typing and Its Application to a Global Collection of Isolates
    Theun de Groot, Ynze Puts, Indira Berrío, Anuradha Chowdhary, Jacques F. G. M. Meis · 2020 · mBio
  55. Chromosome-scale assembly of the Dendrobium chrysotoxum genome enhances the understanding of orchid evolution
    Yongxia Zhang, Guoqiang Zhang, Diyang Zhang, Xuedie Liu, Xinyu Xu, Weihong Sun, Xia Yu, Xiaoen Zhu, Zhi-Wen Wang, Xiang Zhao et al. · 2021 · Horticulture Research
  56. Recurrent repeat expansions in human cancer genomes
    Graham Scott Erwin, Gamze Gürsoy, Rashid Al-Abri, Ashwini Suriyaprakash, Egor Dolzhenko, Kevin Zhu, Christian R. Hoerner, Shannon M. White, Lucia Ramirez, Ananya Vadlakonda et al. · 2022 · Nature
  57. Transposition of MINE, a composite retrotransposon, in the avirulence gene ACE1 of the rice blast fungus Magnaporthe grisea
    Isabelle Fudal, Heidi U. Böhnert, Didier Tharreau, Marc‐Henri Lebrun · 2005 · Fungal Genetics and Biology
  58. Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment
    Cai Li, Yong Zhang, Jianwen Li, Lesheng Kong, Haofu Hu, Hailin Pan, Luohao Xu, Yuan Deng, Qiye Li, Lijun Jin et al. · 2014 · GigaScience
  59. Protein Expansion Is Primarily due to Indels in Intrinsically Disordered Regions
    S. Light, Rauan Sagit, Oxana Sachenkova, Diana Stark Ekman, Arne Elofsson · 2013 · Molecular Biology and Evolution
  60. The mitochondrial genome of the phytopathogenic basidiomycete Moniliophthora perniciosa is 109kb in size and contains a stable integrated plasmid
    Eduardo Fernandes Formighieri, Ricardo Tibúrcio, Eduardo D. Armas, Francisco J. Medrano, Hugo Shimo, Nicolas Carels, Aristóteles Goés‐Neto, Carolina Cotomacci, Marcelo Falsarella Carazzolle, Naiara Sardinha-Pinto et al. · 2008 · Mycological Research
  61. Complete mitochondrial genomes of Anopheles stephensi and An. dirus and comparative evolutionary mitochondriomics of 50 mosquitoes
    You-Jin Hao, Yi-Lin Zou, Yi-Ran Ding, Wenyue Xu, Zhen-Tian Yan, Xu-Dong Li, Wen-Bo Fu, Ting-Jing Li, Bin Chen · 2017 · Scientific Reports
  62. The draft genome assembly of Rhododendron delavayi Franch. var. delavayi
    Lu Zhang, Pengwei Xu, Yanfei Cai, Lulin Ma, Shifeng Li, Shufa Li, Weijia Xie, Jie Song, Lvchun Peng, Huijun Yan et al. · 2017 · GigaScience
  63. Complete chloroplast genome sequence and comparative analysis of loblolly pine (Pinus taeda L.) with related species
    Sajjad Asaf, Abdul Latif Khan, Muhammad Aaqil Khan, Raheem Shahzad, Lubna, Sang‐Mo Kang, Ahmed Al‐Harrasi, Ahmed N. Al-Rawahi, In‐Jung Lee · 2018 · PLoS ONE
  64. Developing New Oligo Probes to Distinguish Specific Chromosomal Segments and the A, B, D Genomes of Wheat (Triticum aestivum L.) Using ND-FISH
    Shuyao Tang, Zongxiang Tang, Ling Qiu, Zujun Yang, Guangrong Li, Tao Lang, Wenqian Zhu, Jiehong Zhang, Shulan Fu · 2018 · Frontiers in Plant Science
  65. Pan-plastome approach empowers the assessment of genetic variation in cultivated Capsicum species
    Mahmoud Magdy, Lijun Ou, Huiyang Yu, Rong Chen, Yuhong Zhou, Heba Hassan, Bihong Feng, Nathan K. Taitano, Esther van der Knaap, Xuexiao Zou et al. · 2019 · Horticulture Research
  66. NanoSatellite: accurate characterization of expanded tandem repeat length and sequence through whole genome long-read sequencing on PromethION
    Arne De Roeck, Wouter De Coster, Liene Bossaerts, Rita Cacace, Tim De Pooter, Jasper Van Dongen, Svenn D’Hert, Peter De Rijk, Mojca Stražišar, Christine Van Broeckhoven et al. · 2019 · Genome biology
  67. Rapid protein evolution, organellar reductions, and invasive intronic elements in the marine aerobic parasite dinoflagellate Amoebophrya spp
    Sarah Farhat, Phuong Thi Le, Ehsan Kayal, Benjamin Noël, Estelle Bigeard, Erwan Corre, Florian Maumus, Isabelle Florent, Adriana Alberti, Jean‐Marc Aury et al. · 2021 · BMC Biology
  68. Systematic multi-omics cell line profiling uncovers principles of Ewing sarcoma fusion oncogene-mediated gene regulation
    Martin F. Orth, Didier Surdez, Tobias Faehling, Anna C. Ehlers, Aruna Marchetto, Sandrine Grossetête, Richard Volckmann, Danny A. Zwijnenburg, Julia S. Gerke, Sakina Zaïdi et al. · 2022 · Cell Reports
  69. Genomic architecture of human 17q21 linked to frontotemporal dementia uncovers a highly homologous family of low-copy repeats in the tau region
    Marc Cruts, Rosa Rademakers, Ilse Gijselinck, Julie van der Zee, Bart Dermaut, Tim De Pooter, Peter De Rijk, Jurgen Del‐Favero, Christine Van Broeckhoven · 2005 · Human Molecular Genetics
  70. Widespread evidence of cooperative DNA binding by transcription factors in Drosophila development
    Majid Kazemian, Hannah N. Pham, Scot A. Wolfe, Michael H. Brodsky, Saurabh Sinha · 2013 · Nucleic Acids Research
  71. The complete sequences and gene organisation of the mitochondrial genomes of the heterodont bivalves Acanthocardia tuberculata and Hiatella arctica – and the first record for a putative Atpase subunit 8 gene in marine bivalves
    Hermann Dreyer, Gerhard Steiner · 2006 · Frontiers in Zoology
  72. Prion protein gene polymorphisms in Saccharomyces cerevisiae
    Catarina G. Resende, Tiago F. Outeiro, Laina Sands, Susan Lee Lindquist, Mick F. Tuite · 2003 · Molecular Microbiology
  73. New species of Ehrlichia isolated from Rhipicephalus (Boophilus) microplus shows an ortholog of the E. canis major immunogenic glycoprotein gp36 with a new sequence of tandem repeats
    Alejandro Cabezas‐Cruz, Erich Zweygarth, Múcio Flávio Barbosa Ribeiro, Júlia Angélica Gonçalves da Silveira, José de la Fuente, Libor Grubhoffer, James J. Valdés, Lygia Maria Friche Passos · 2012 · Parasites & Vectors
  74. Physical location of tandem repeats in the wheat genome and application for chromosome identification
    Tao Lang, Guangrong Li, Hongjin Wang, Zhihui Yü, Qiheng Chen, Ennian Yang, Shulan Fu, Zongxiang Tang, Zujun Yang · 2018 · Planta
  75. Accurate detection of mosaic variants in sequencing data without matched controls
    Yanmei Dou, Minseok Kwon, Rachel E. Rodin, Isidro Cortés‐Ciriano, Ryan N. Doan, Lovelace J. Luquette, Alon Galor, Craig L. Bohrson, Christopher A. Walsh, Peter J. Park · 2020 · Nature Biotechnology
  76. A chromosome‐level genome assembly provides insights into ascorbic acid accumulation and fruit softening in guava (Psidium guajava)
    Chen Feng, Chao Feng, Xinggu Lin, Shenghui Liu, Yingzhi Li, Ming Kang · 2020 · Plant Biotechnology Journal
  77. gcType: a high-quality type strain genome database for microbial phylogenetic and functional research
    Wenyu Shi, Qinglan Sun, Guomei Fan, Sugawara Hideaki, Moriya Ohkuma, Takashi Itoh, Yu‐Guang Zhou, Man Cai, Song-Gun Kim, Jung‐Sook Lee et al. · 2020 · Nucleic Acids Research
  78. Structural modularity of the XIST ribonucleoprotein complex
    Zhipeng Lu, Jimmy K. Guo, Yuning Wei, Diana R. Dou, Brian J. Zarnegar, Qing Ma, Rui Li, Yang Zhao, Fan Liu, Hani Choudhry et al. · 2020 · Nature Communications
  79. Genome structures resolve the early diversification of teleost fishes
    Parey, Elise, Louis, Alexandra, Montfort, Jerome, Bouchez, Olivier, Roques, Céline, Iampietro, Carole, Lluch, Jerome, Castinel, Adrien, Donnadieu, Cécile, Desvignes, Thomas et al. · 2023 · Science
  80. On the origin and evolution of RNA editing in metazoans
    Pei Zhang, Yuanzhen Zhu, Qunfei Guo, Ji Li, Xiaoyu Zhan, Hao Yu, Nianxia Xie, Huishuang Tan, Nina Lundholm, Lydia Garcia‐Cuetos et al. · 2023 · Cell Reports
  81. The Torreya grandis genome illuminates the origin and evolution of gymnosperm-specific sciadonic acid biosynthesis
    Heqiang Lou, Lili Song, Xiaolong Li, Hailing Zi, Weijie Chen, Yadi Gao, Shan Zheng, Zhangjun Fei, Xuepeng Sun, Jiasheng Wu · 2023 · Nature Communications
  82. Assessment of the genetic diversity in cowpea (Vigna unguiculataL. Walp.) germplasm from Ghana using simple sequence repeat markers
    Aaron Tettey Asare, Bhavani Shankara Gowda, Isaac Galyuon, Aboagye Lawrence, Jemmy F. Takrama, Michael Paul Timko · 2010 · Plant Genetic Resources
  83. The sacred lotus genome provides insights into the evolution of flowering plants
    Yun Wang, Guangyi Fan, Yiman Liu, Fengming Sun, Chengcheng Shi, Xin Liu, Jing Yun Peng, Wenbin Chen, Xinfang Huang, Shifeng Cheng et al. · 2013 · The Plant Journal
  84. Applied Genomics: Data Mining Reveals Species-Specific Malaria Diagnostic Targets More Sensitive than 18S rRNA
    Allison R. Demas, Jenna Oberstaller, Jeremy D. DeBarry, Naomi W. Lucchi, Ganesh Srinivasamoorthy, Deborah Sumari, Abdunoor M. Kabanywanyi, Leopoldo Villegas, Ananías A. Escalante, S. Patrick Kachur et al. · 2011 · Journal of Clinical Microbiology
  85. Reassessment of the evolution of wheat chromosomes 4A, 5A, and 7B
    Jan Dvořák, Le Wang, Tingting Zhu, Chad M. Jorgensen, Ming‐Cheng Luo, Karin R. Deal, Yong Gu, Bikram Singh Gill, Assaf Distelfeld, Katrien M. Devos et al. · 2018 · Theoretical and Applied Genetics
  86. Contrasting Gene Decay in Subterranean Vertebrates: Insights from Cavefishes and Fossorial Mammals
    Maxime Policarpo, Julien Fumey, Philippe Lafargeas, Delphine Naquin, Claude Thermes, Magali Naville, Corentin Dechaud, Jean‐Nicolas Volff, Cédric Cabau, Christophe Klopp et al. · 2020 · Molecular Biology and Evolution
  87. Whole-genome sequencing with long reads reveals complex structure and origin of structural variation in human genetic variations and somatic mutations in cancer
    Akihiro Fujimoto, Jing Hao Wong, Yukiko Yoshii, Shintaro Akiyama, Azusa Tanaka, Hitomi Yagi, Daichi Shigemizu, Hidewaki Nakagawa, Masashi Mizokami, Mihoko Shimada · 2021 · Genome Medicine
  88. De Novo Assembly of 20 Chicken Genomes Reveals the Undetectable Phenomenon for Thousands of Core Genes on Microchromosomes and Subtelomeric Regions
    Ming Li, Congjiao Sun, Naiyi Xu, Peipei Bian, Xiaomeng Tian, Xihong Wang, Yuzhe Wang, Xinzheng Jia, Rasmus Heller, Mingshan Wang et al. · 2022 · Molecular Biology and Evolution
  89. Y Chromosome Deletions in Azoospermic Men in India
    Kumarasamy Thangaraj K, Nalini J. Gupta, Kadupu Pavani, Alla Govardhana Reddy, Subbaya Subramainan, Deepa Selvi Rani, Bibaswan Ghosh, Baidyanath Chakravarty, Lalji Singh · 2003 · Journal of Andrology
  90. Cross-species comparison significantly improves genome-wide prediction of cis-regulatory modules in Drosophila
    Saurabh Sinha, Mark D Schroeder, Ulrich Unnerstall, Ulrike Gaul, Eric D. Siggia · 2004 · BMC Bioinformatics
  91. Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets
    Nicolas Buisine, Hadi Quesneville, Vincent Colot · 2008 · Genomics
  92. Genomic linkage map of the human blood fluke Schistosoma mansoni
    Charles D. Criscione, Claudia L.L. Valentim, Hirohisa Hirai, Philip T. LoVerde, Timothy J. C. Anderson · 2009 · Genome biology
  93. Tandem repeats over the edit distance
    Dina Sokol, Gary Benson, Justin Tojeira · 2007 · Bioinformatics
  94. Plasmodium falciparum centromeres display a unique epigenetic makeup and cluster prior to and during schizogony
    W. A. M. Hoeijmakers, Christian Flueck, K. Francoijs, A. H. Smits, J. Wetzel, Jennifer C. Volz, A. Cowman, T. Voss, H. Stunnenberg, R. Bártfai · 2012 · Cellular Microbiology
  95. Structure, Transcription, and Variability of Metazoan Mitochondrial Genome: Perspectives from an Unusual Mitochondrial Inheritance System
    Fabrizio Ghiselli, Liliana Milani, Davide Guerra, Peter L. Chang, Sophie Breton, Sergey V. Nuzhdin, Marco Passamonti · 2013 · Genome Biology and Evolution
  96. Genome of Plant Maca ( Lepidium meyenii ) Illuminates Genomic Basis for High-Altitude Adaptation in the Central Andes
    Jing Zhang, Yang Meng Tian, Liang Yan, Guanghui Zhang, Xiao Rui Wang, Yan Zeng, Jiajin Zhang, Xiao Ma, Yuntao Tan, Ni Long et al. · 2016 · Molecular Plant
  97. Aligning Multiple Whole Genomes with Mercator and MAVID
    Dewey, Colin N. · 2007 · Methods in Molecular Biology
  98. The structure, function, and evolution of plant centromeres
    Matthew Naish, Ian R. Henderson · 2024 · Genome Research
  99. The complete mitochondrial genome of the wild silkworm moth, Actias selene
    Qiu‐Ning Liu, Baojian Zhu, Li‐Shang Dai, Guo-Qing Wei, Chao-Liang Liu · 2012 · Gene
  100. Structural variants in the Chinese population and their impact on phenotypes, diseases and population adaptation
    Zhikun Wu, Zehang Jiang, Tong Li, Chuanbo Xie, Liansheng Zhao, Shuai Ouyang, Shuai Ouyang, Yizhi Liu, Tao Li, Zhi Xie · 2021 · Nature Communications